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2020
1 Niarakis, Anna; Kuiper, Martin; Ostaszewski, Marek; Sheriff, Rahuman Malik; Casals, Cristina; Thieffry, Denis; Freeman, Tom; Thomas, Paul; Touré, Vasundra; Noel, Vincent; Stoll, Gauthier; Saez-Rodriguez, Julio; Naldi, Aurélien; Oshurko, Eugenia; Xenarios, Ioannis; Soliman, Sylvain; Chaouiya, Claudine; Helikar, Tomas; Calzone, Laurence.
Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop. Briefings in Bioinformatics 2020
NTNU Untitled
 
2 Touré, Vasundra; Vercruysse, Steven; Acencio, Marcio Luis; Lovering, Ruth C.; Orchard, Sandra; Bradley, Glyn; Casals-Casas, Cristina; Chaouiya, Claudine; del-Toro, Noemi; Flobak, Åsmund; Gaudet, Pascale; Hermjakob, Henning; Hoyt, Charles Tapley; Licata, Luana; Lægreid, Astrid; Mungall, Christopher; Niknejad, Anne; Panni, Simona; Perfetto, Livia; Porras, Pablo; Pratt, Dexter; Saez-Rodriguez, Julio; Thieffry, Denis; Thomas, Paul; Türei, Dénes; Kuiper, Martin.
The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST). Bioinformatics 2020
NTNU Untitled
 
2019
3 Acencio, Marcio Luis; Touré, Vasundra; Kuiper, Martin.
MICAST Curation Guidelines: example of application for the causal relationships between DNA binding transcription factors and target genes. Biocuration 2019: Developing the Gene Regulation Knowledge Commons; 2019-04-07 - 2019-04-07
NTNU Untitled
 
4 Neal, Maxwell Lewis; König, Matthias; Nickerson, David; Mısırlı, Göksel; Kalbasi, Reza; Dräger, Andreas; Atalag, Koray; Chelliah, Vijayalakshmi; Cooling, Michael T.; Cook, Daniel L.; Crook, Sharon; de Alba, Miguel; Friedman, Samuel H.; Garny, Alan; Gennari, John H.; Gleeson, Padraig; Golebiewski, Martin; Hucka, Michael; Juty, Nick; Myers, Chris; Olivier, Brett G.; Sauro, Herbert M.; Scharm, Martin; Snoep, Jacky L.; Touré, Vasundra; Wipat, Anil; Wolkenhauer, Olaf; Waltemath, Dagmar.
Harmonizing semantic annotations for computational models in biology. Briefings in Bioinformatics 2019 ;Volum 20.(2) s. 540-550
NTNU Untitled
 
5 Perfetto, Livia; Acencio, Marcio Luis; Bradley, Glyn; Cesareni, Gianni; del Toro, Noemi; Fazekas, David; Hermjakob, Henning; Korcsmaros, Tamas; Kuiper, Martin; Lægreid, Astrid; Lo Surdo, Prisca; Lovering, Ruth C.; Orchard, Sandra; Porras, Pablo; Thomas, Paul; Touré, Vasundra; Zobolas, John; Licata, Luana.
CausalTAB: the PSI-MITAB 2.8 updated format for signalling data representation and dissemination. Bioinformatics 2019 ;Volum 35.(19) s. 3779-3785
NTNU Untitled
 
6 Rougny, Adrien; Touré, Vasundra; Moodie, Stuart; Balaur, Irina; Czauderna, Tobias; Borlinghaus, Hanna; Dogrusoz, Ugur; Mazein, Alexander; Dräger, Andreas; Blinov, Michael L.; Villéger, Alice; Haw, Robin; Demir, Emek; Mi, Huaiyu; Sorokin, Anatoly; Schreiber, Falk; Luna, Augustin.
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. Journal of Integrative Bioinformatics (JIB) 2019 ;Volum 16.(2) s. 1-81
NTNU Untitled
 
7 Vercruysse, Steven; Zobolas, John; Touré, Vasundra; Kuiper, Martin.
VSM-box: the general-purpose curation interface as an open-source web-component. Biocuration 2019; 2019-04-08 - 2019-04-11
NTNU Untitled
 
8 Vercruysse, Steven; Zobolas, John; Touré, Vasundra; Kuiper, Martin.
VSM-box: the general-purpose curation interface as an open-source web-component [version 1; not peer reviewed]. F1000Research 2019, 8:442 (poster). The 12th International Biocuration Conference 2019; 2019-04-12
NTNU Untitled
 
2018
9 Scharm, Martin; Gebhardt, Tom; Touré, Vasundra; Bagnacani, Andrea; Salehzadeh-Yazdi, Ali; Wolkenhauer, Olaf; Waltemath, Dagmar.
Evolution of computational models in BioModels Database and the Physiome Model Repository. BMC Systems Biology 2018 ;Volum 12.(1) s. -
NTNU Untitled
 
10 Touré, Vasundra; Flobak, Åsmund; Lægreid, Astrid; Kuiper, Martin.
Knowledge management and standard representation of causal statements for systems modeling.. JOBIM 2018; 2018-07-03 - 2018-07-06
NTNU Untitled
 
11 Touré, Vasundra; Le Novère, Nicolas; Waltemath, Dagmar; Wolkenhauer, Olaf.
Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation. PLoS Computational Biology 2018 ;Volum 14:e1005740.(2) s. 1-6
Untitled
 
2017
12 Touré, Vasundra; Flobak, Åsmund; Lægreid, Astrid; Kuiper, Martin Tremen R..
Extraction and representation of causal statements: Creating a model building resource for Systems Biology. COMBINE 2017; 2017-10-09 - 2017-10-13
NTNU Untitled
 
2016
13 Touré, Vasundra; Mazein, Alexander; Waltemath, Dagmar; Balaur, Irina; Saqi, Mansoor; Henkel, Ron; Pellet, Johann; Auffray, Charles.
STON: Exploring biological pathways using the SBGN standard and graph databases. BMC Bioinformatics 2016
NTNU Untitled