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2020
1 Eriksen, Anne Marie Høier; Matthiesen, Henning; Kontopoulos, Ioannis; Gregory, David John; Snoeck, Christophe; Zhang, Guojie; Collins, Matthew James; Gilbert, Marcus Thomas Pius.
Rapid loss of endogenous DNA in pig bone buried in five different environments. Archaeometry 2020 s. 1-20
NTNU Untitled
 
2019
2 Ameen, Carly; Feuerborn, Tatiana R.; Brown, Sarah K.; Linderholm, Anna; Hulme-Beaman, Ardern; Lebrasseur, Ophélie; Sinding, Mikkel Holger Strander; Lounsberry, Zachary T.; Lin, Audrey T.; Appelt, Martin; Bachmann, Lutz; Betts, Matthew; Britton, Kate; Darwent, John; Dietz, Rune; Fredholm, Merethe; Gopalakrishnan, Shyam; Goruinova, Olga I.; Grønnow, Bjarne; Haile, James; Hallsson, Jón Hallsteinn; Harrison, Ramona; Heide-Jørgensen, Mads-Peter; Knecht, Rick; Losey, Robert J.; Masson-MacLean, Edouard; McGovern, Thomas H.; McManus-Fry, Ellen; Meldgaard, Morten; Midtdal, Åslaug; Moss, Madonna L.; Nikitin, Iurii G.; Nomokonova, Tatiana; Palsdottir, Albina Hulda; Perri, Angela; Popov, Aleksandr N.; Rankin, Lisa; Reuther, Joshua D.; Sablin, Mikhail V.; Schmidt, Anne Lisbeth; Shirar, Scott; Smiarowski, Konrad; Sonne, Christian; Stiner, Mary C.; Vasyukov, Mitya; West, Catherine F.; Ween, Gro Birgit; Wennerberg, Sanne Eline; Wiig, Øystein; Woollett, James; Dalén, Love; Hansen, Anders J.; Gilbert, Marcus Thomas Pius; Sacks, Benjamin N.; Frantz, Laurent A.F.; Larson, Greger; Dobney, Keith; Darwent, Christyann M.; Evin, Allowen.
Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic. Proceedings of the Royal Society of London. Biological Sciences 2019 ;Volum 286:20291929.(1929) s. 1-10
NTNU UiB UiO Untitled
 
3 Loog, Liisa; Thalmann, Olaf; Sinding, Mikkel Holger Strander; Schuenemann, Verena J.; Perri, Angela; Germonpré, Mietje; Bocherens, Herve; Witt, Kelsey E.; Samaniego Castruita, José Alfredo; Velasco, Marcela Sandoval; Lundstrøm, Inge K.C.; Wales, Nathan; Sonet, Gontran; Frantz, Laurent; Schroeder, Hannes; Budd, Jane; Jimenez, Elodie-Laure; Fedorov, Sergey; Gasparyan, Boris; Kandel, Andrew W.; Lázničková-Galetová, Martina; Napierala, Hannes; Uerpmann, Hans-Peter; Nikolskiy, Pavel A.; Pavlova, Elena Y.; Pitulko, Vladimir V.; Herzig, Karl-Heinz; Malhi, Ripan S.; Willerslev, Eske; Hansen, Anders J.; Dobney, Keith; Gilbert, Marcus Thomas Pius; Krause, Johannes; Larson, Greger; Eriksson, Anders; Manica, Andrea.
Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia. Molecular Ecology 2019 s. -
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4 Pan, Hailin; Cole, Theresa L.; Bi, Xupeng; Fang, Miaoquan; Zhou, Chengran; Yang, Zhengtao; Ksepka, Daniel T.; Hart, Tom; Bouzat, Juan L.; Argilla, Lisa S.; Bertelsen, Mads F.; Boersma, P. Dee; Bost, Charles-André; Cherel, Yves; Dann, Peter; Fiddaman, Steven R.; Howard, Pauline; Labuschagne, Kim; Mattern, Thomas; Miller, Gary; Parker, Patricia; Phillips, Richard A.; Quillfeldt, Petra; Ryan, Peter G.; Taylor, Helen; Thompson, David R.; Young, Melanie J.; Ellegaard, Martin; Gilbert, Marcus Thomas Pius; Sinding, Mikkel Holger Strander; Pacheco, George; Shepherd, Lara D.; Tennyson, Alan J.D.; Grosser, Stefanie; Kay, Emily; Nupen, Lisa J.; Ellenberg, Ursula; Houston, David M.; Reeve, Andrew Hart; Johnson, Kathryn; Masello, Juan F.; Stracke, Thomas; McKinlay, Bruce; Borboroglu, Pablo García; Zhang, De-Xing; Zhang, Guojie.
High-coverage genomes to elucidate the evolution of penguins. GigaScience 2019 ;Volum 8.(9) s. 1-17
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5 Rey-Iglesia, Alba; Gopalakrishan, Shyam; Carøe, Christian; Alquezar-Planas, David E.; Ahlmann Nielsen, Anne; Röder, Timo; Bruhn Pedersen, Lene; Næsborg-Nielsen, Christina; Sinding, Mikkel Holger Strander; Fredensborg Rath, Martin; Li, Zhipeng; Petersen, Bent; Gilbert, Marcus Thomas Pius; Bunce, Michael; Mourier, Tobias; Hansen, Anders Johannes.
MobiSeq: De novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements. Molecular Ecology Resources 2019 ;Volum 19.(2) s. 512-525
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6 Alberdi, Antton; Gilbert, Marcus Thomas Pius.
A guide to the application of Hill numbers to DNA-based diversity analyses. Molecular Ecology Resources 2019 ;Volum 19.(4) s. 804-817
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7 Alves, Joel M.; Carneiro, Miguel; Cheng, Jade Y.; de Matos, Ana Lemos; Rahman, Masmudur M.; Loog, Liisa; Campos, Paula F.; Wales, Nathan; Eriksson, Anders; Manica, Andrea; Strive, Tanja; Graham, Stephen C.; Afonso, Sandra; Bell, Diana J.; Belmont, Laura; Day, Jonathan P.; Fuller, Susan J.; Marchandeau, Stéphane; Palmer, William J.; Queney, Guillaume; Surridge, Alison K.; Vieira, Filipe G.; McFadden, Grant; Nielsen, Rasmus; Gilbert, Marcus Thomas Pius; Esteves, Pedro J.; Ferrand, Nuno; Jiggins, Francis M..
Parallel adaptation of rabbit populations to myxoma virus. Science 2019 ;Volum 363.(6433) s. 1319-1326
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8 Cappellini, Enrico; Welker, Frido; Pandolfi, Luca; Ramos-Madrigal, Jazmín; Samodova, Diana; Rüther, Patrick L.; Fotakis, Anna K.; Lyon, David; Moreno-Mayar, J. Víctor; Bukhsianidze, Maia; Jersie-Christensen, Rosa Rakownikow; Mackie, Meaghan; Ginolhac, Aurélien; Ferring, Reid; Tappen, Martha; Palkopoulou, Eleftheria; Dickinson, Marc R.; Stafford, Jr., Thomas W.; Chan, Yvonne L.; Götherström, Anders; Nathan, Senthilvel K.S.S.; Heintzman, Peter D.; Kapp, Joshua D.; Kirillova, Irina V.; Moodley, Yoshan; Agusti, Jordi; Kahlke, Ralf-Dietrich; Kiladze, Gocha; Martínez-Navarro, Bienvenido; Liu, Shanlin; Sandoval Velasco, Marcela; Sinding, Mikkel-Holger S.; Kelstrup, Christian D.; Allentoft, Morten E.; Orlando, Ludovic; Penkman, Kirsty; Shapiro, Beth; Rook, Lorenzo; Dalén, Love; Gilbert, Marcus Thomas Pius; Olsen, Jesper V.; Lordkipanidze, David; Willerslev, Eske.
Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny. Nature 2019 ;Volum 574.(7776) s. 103-107
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9 Chen, Lei; Qiu, Qiang; Jiang, Yu; Wang, Kun; Lin, Zeshan; Li, Zhipeng; Bibi, Faysal; Yang, Yongzhi; Wang, Jinhuan; Nie, Wenhui; Su, Weiting; Liu, Guichun; Li, Qiye; Fu, Weiwei; Pan, Xiangyu; Liu, Chang; Yang, Jie; Zhang, Chenzhou; Yin, Yuan; Wang, Yu; Zhao, Yue; Zhang, Chen; Wang, Zhongkai; Qin, Yanli; Liu, Wei; Wang, Bao; Ren, Yandong; Zhang, Ru; Zeng, Yan; da Fonseca, Rute R.; Wei, Bin; Li, Ran; Wan, Wenting; Zhao, Ruoping; Zhu, Wenbo; Wang, Yutao; Duan, Shengchang; Gao, Yun; Zhang, Yong E.; Chen, Chunyan; Hvilsom, Christina; Epps, Clinton W.; Chemnick, Leona G.; Dong, Yang; Mirarab, Siavash; Siegismund, Hans Redlef; Ryder, Oliver A.; Gilbert, Marcus Thomas Pius; Lewin, Harris A.; Zhang, Guojie; Heller, Rasmus; Wang, Wen.
Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits. Science 2019 ;Volum 364.(6446) s. -
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10 De-Dios, Toni; van Dorp, Lucy; Gelabert, Pere; Carøe, Christian; Sandoval-Velasco, Marcela; Fregel, Rosa; Escosa, Raül; Aranda, Carles; Huijben, Silvie; Balloux, Francois; Gilbert, Marcus Thomas Pius; Lalueza-Fox, Carles.
Genetic affinities of an eradicated european plasmodium falciparum strain. Microbial Genomics 2019 ;Volum 5.(9) s. -
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11 Feng, Shaohong; Fang, Qi; Barnett, Ross; Li, Caí; Han, Sojung; Kuhlwilm, Martin; Zhou, Long; Pan, Hailin; Deng, Yuan; Chen, Guangji; Gamauf, Anita; Woog, Friederike; Prys-Jones, Robert; Marques-Bonet, Tomas; Gilbert, Marcus Thomas Pius; Zhang, Guojie.
The Genomic Footprints of the Fall and Recovery of the Crested Ibis. Current Biology 2019 ;Volum 29.(2) s. 340-349.e7
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12 Foote, Andrew D.; Martin, Michael David; Louis, Marie; Pacheco, George; Robertson, Kelly M.; Sinding, Mikkel-Holger; Amaral, Ana R.; Baird, Robin; Baker, Charles; Ballance, Lisa; Barlow, Jay; Brownlow, Andrew; Collins, Tim; Constantine, Rochelle; Dabin, Willy; Rosa, Luciano Dalla; Davison, Nicholas J.; Durban, John W.; Esteban, Ruth; Ferguson, Steven H.; Gerrodette, Tim; Guinet, Christophe; Hanson, M. Bradley; Hoggard, Wayne; Matthews, Cory J.D.; Samarra, Filipa I.P.; de Stephanis, Renaud; Tavares, Sara B.; Tixier, Paul; Totterdell, John A.; Wade, Paul; Excoffier, Laurent; Gilbert, Marcus Thomas Pius; Wolf, Jochen B.W.; Morin, Phillip A..
Killer whale genomes reveal a complex history of recurrent admixture and vicariance. Molecular Ecology 2019 ;Volum 28.(14) s. 3427-3444
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13 Frantz, Laurent A.F.; Haile, James; Lin, Audrey T.; Scheu, Amelie; Geörg, Christina; Benecke, Norbert; Alexander, Michelle; Linderholm, Anna; Mullin, Victoria E.; Daly, Kevin G.; Battista, Vincent M.; Price, Max; Gron, Kurt J.; Alexandri, Panoraia; Arbogast, Rose-Marie; Arbuckle, Benjamin; Bӑlӑşescu, Adrian; Barnett, Ross; Bartosiewicz, László; Baryshnikov, Gennady; Bonsall, Clive; Borić, Dušan; Boroneanţ, Adina; Bulatović, Jelena; Çakirlar, Canan; Carretero, José-Miguel; Chapman, John; Church, Mike; Crooijmans, Richard; De Cupere, Bea; Detry, Cleia; Dimitrijevic, Vesna; Dumitraşcu, Valentin; Du Plessis, Louis; Edwards, Ceiridwen J.; Erek, Cevdet Merih; Erim-Özdoğan, Aslı; Ervynck, Anton; Fulgione, Domenico; Gligor, Mihai; Götherström, Anders; Gourichon, Lionel; Groenen, Martien A.M.; Helmer, Daniel; Hongo, Hitomi; Horwitz, Liora K.; Irving-Pease, Evan K.; Lebrasseur, Ophélie; Lesur, Joséphine; Malone, Caroline; Manaseryan, Ninna; Marciniak, Arkadiusz; Martlew, Holley; Mashkour, Marjan; Matthews, Roger; Matuzeviciute, Giedre Motuzaite; Maziar, Sepideh; Meijaard, Erik; McGovern, Tom; Megens, Hendrik-Jan; Miller, Rebecca; Mohaseb, Azadeh Fatemeh; Orschiedt, Jörg; Orton, David; Papathanasiou, Anastasia; Pearson, Mike Parker; Pinhasi, Ron; Radmanović, Darko; Ricaut, François-Xavier; Richards, Mike; Sabin, Richard; Sarti, Lucia; Schier, Wolfram; Sheikhi, Shiva; Stephan, Elisabeth; Stewart, John R.; Stoddart, Simon; Tagliacozzo, Antonio; Tasić, Nenad; Trantalidou, Katerina; Tresset, Anne; Valdiosera, Cristina; van den Hurk, Youri; van Poucke, Sophie; Vigne, Jean-Denis; Yanevich, Alexander; Zeeb-Lanz, Andrea; Triantafyllidis, Alexandros; Gilbert, Marcus Thomas Pius; Schibler, Jörg; Rowley-Conwy, Peter; Zeder, Melinda; Peters, Joris; Cucchi, Thomas; Bradley, Daniel G.; Dobney, Keith; Burger, Joachim; Evin, Allowen; Girdland-Flink, Linus; Larson, Greger.
Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe. Proceedings of the National Academy of Sciences of the United States of America 2019 ;Volum 116.(35) s. 17231-17238
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14 Jensen, Theis Zetner Trolle; Niemann, Jonas; Iversen, Katrine Højholt; Fotakis, Anna K.; Gopalakrishnan, Shyam; Vågene, Åshild J; Pedersen, Mikkel Winther; Sinding, Mikkel-Holger S.; Ellegaard, Martin R; Allentoft, Morten E.; Lanigan, Liam T; Taurozzi, Alberto J; Nielsen, Sofie Holtsmark; Dee, Michael W; Mortensen, Martin; Christensen, Mads C; Sørensen, Søren; Collins, Matthew J; Gilbert, Marcus Thomas Pius; Sikora, Martin; Rasmussen, Simon; Schroeder, Hannes.
A 5700 year-old human genome and oral microbiome from chewed birch pitch. Nature Communications 2019 ;Volum 10. s. -
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15 Jones, Rhys; Velasco, Marcela Sandoval; Harris, Llinos G; Morgan, Sue; Temple, Mark; Ruddy, Michael C; Williams, Rhian; Perry, Michael D; Hitchings, Matt; Wilkinson, Thomas S; Humphrey, Thomas; Gilbert, Marcus Thomas Pius; Davies, Angharad P.
Resolving a clinical tuberculosis outbreak using palaeogenomic genome reconstruction methodologies. Tuberculosis 2019 ;Volum 119. s. -
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16 Kieler, Ida Nordang; Osto, Melania; Hugentobler, Leoni; Puetz, Lara; Gilbert, Marcus Thomas Pius; Hansen, Torben; Pedersen, Oluf; Reusch, Claudia E.; Zini, Eric; Lutz, Thomas A.; Bjørnvad, Charlotte Reinhard.
Diabetic cats have decreased gut microbial diversity and a lack of butyrate producing bacteria. Scientific Reports 2019 ;Volum 9. s. -
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17 Knapp, Michael; Thomas, Jessica E; Haile, James; Prost, Stefan; Ho, Simon YW; Dussex, Nicolas; Cameron-Christie, Sophia; Kardailsky, Olga; Barnett, Ross; Bunce, Michael; Gilbert, Marcus Thomas Pius; Scofield, R Paul.
Mitogenomic evidence of close relationships between New Zealand's extinct giant raptors and small-sized Australian sister-taxa. Molecular Phylogenetics and Evolution 2019 ;Volum 134. s. 122-128
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18 Lin, Zeshan; Chen, Lei; Chen, Xianqing; Zhong, Yingbin; Yang, Yue; Xia, Wenhao; Liu, Chang; Zhu, Wenbo; Wang, Han; Yan, Biyao; Yang, Yifeng; Liu, Xing; Kvie, Kjersti; Røed, Knut; Wang, Kun; Xiao, Wuhan; Wei, Haijun; Li, Guangyu; Heller, Rasmus; Gilbert, Marcus Thomas Pius; Qiu, Qiang; Wang, Wen; Li, Zhipeng.
Biological adaptations in the Arctic cervid, the reindeer (Rangifer tarandus). Science 2019 ;Volum 364.(6446) s. 1-8
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19 Ramos-Madrigal, Jazmín; Runge, Anne Kathrine Wiborg; Bouby, Laurent; Lacombe, Thierry; Samaniego Castruita, José Alfredo; Adam-Blondon, Anne-Francoise; Figueiral, Isabel; Hallavant, Charlotte; Martinez-Zapater, Jose M; Schaal, Caroline; Topfer, Reinhard; Petersen, Bent; Sicheritz-Pontén, Thomas; This, Patrice; Bacilieri, Roberto; Gilbert, Marcus Thomas Pius; Wales, Nathan.
Palaeogenomic insights into the origins of French grapevine diversity. Nature Plants 2019 ;Volum 5.(6) s. 595-603
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20 Ribeiro, Angela; Puetz, Lara; Pattinson, Nicholas B; Dalén, Love; Deng, Yuan; Zhang, Guojie; Da Fonseca, Rute R.; Smit, Ben; Gilbert, Marcus Thomas Pius.
31° South: The physiology of adaptation to arid conditions in a passerine bird. Molecular Ecology 2019 ;Volum 28.(16) s. 3709-3721
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21 Sarmashghi, Shahab; Bohmann, Kristine; Gilbert, Marcus Thomas Pius; Bafna, Vineet; Mirarab, Siavash.
Skmer: assembly-free and alignment-free sample identification using genome skims. Genome Biology 2019 ;Volum 20. s. -
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22 Sirén, Kimmo; Mak, Sarah Siu Tze; Fischer, Ulrich; Hansen, Lars Hestbjerg; Gilbert, Marcus Thomas Pius.
Multi-omics and potential applications in wine production. Current Opinion in Biotechnology 2019 ;Volum 56. s. 172-178
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23 Sirén, Kimmo; Mak, Sarah Siu Tze; Melkonian, Chrats; Carøe, Christian; Swiegers, Jan Hendrik; Molenaar, Douwe; Fischer, Ulrich; Gilbert, Marcus Thomas Pius.
Taxonomic and functional characterization of the microbial community during spontaneous in vitro fermentation of riesling must. Frontiers in Microbiology 2019 ;Volum 10. s. -
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24 Smith, Oliver; Dunshea, Glenn; Sinding, Mikkel-Holger; Fedorov, Sergey; Germonpre, Mietje; Bocherens, Hervé; Gilbert, Marcus Thomas Pius.
Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival. PLoS Biology 2019 ;Volum 17.(7) s. -
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25 Thomas, Jessica E.; Carvalho, Gary R.; Haile, James; Rawlence, Nicolas J.; Martin, Michael David; Ho, Simon Y.W.; Sigfússon, Arnór Þ.; Jósefsson, Vigfús A.; Frederiksen, Morten; Linnebjerg, Jannie F.; Castruita, Jose A. Samaniego; Niemann, Jonas; Sinding, Mikkel-Holger S.; Sandoval-Velasco, Marcela; Soares, André E.R.; Lacy, Robert; Barilaro, Christina; Best, Julia; Brandis, Dirk; Cavallo, Chiara; Elorza, Mikelo; Garrett, Kimball L; Groot, Maaike; Johansson, Friederike; Lifjeld, Jan Terje; Nilson, Göran; Serjeanston, Dale; Sweet, Paul; Fuller, Errol; Hufthammer, Anne Karin; Meldgaard, Morten; Fjeldså, Jon; Shapiro, Beth; Hofreiter, Michael; Stewart, John R.; Gilbert, Marcus Thomas Pius; Knapp, Michael.
Demographic reconstruction from ancient DNA supports rapid extinction of the great auk. eLIFE 2019 ;Volum 8:e47509. s. -
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26 Wales, Nathan; Akman, Melis; Watson, Ray H B; Sánchez Barreiro, Fatima; Smith, Bruce D; Gremillion, Kristen J; Gilbert, Marcus Thomas Pius; Blackman, Benjamin K.
Ancient DNA reveals the timing and persistence of organellar genetic bottlenecks over 3,000 years of sunflower domestication and improvement. Evolutionary Applications 2019 ;Volum 12.(1) s. 38-53
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2018
27 Bro-Jørgensen, Maiken Hemme; Carøe, Christian; Vieira, Filipe G.; Nestor, Sofia; Hallström, Ann; Gregersen, Kristian M.; Etting, Vivian; Gilbert, Marcus Thomas Pius; Sinding, Mikkel Holger Strander.
Ancient DNA analysis of Scandinavian medieval drinking horns and the horn of the last aurochs bull. Journal of Archaeological Science 2018 ;Volum 99. s. 47-54
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28 Gopalakrishnan, Shyam; Sinding, Mikkel Holger Strander; Ramos-Madrigal, Jazmín; Niemann, Jonas; Samaniego Castruita, Jose A.; Vieira, Filipe G.; Carøe, Christian; Montero, Marc de Manuel; Kuderna, Lukas; Serres, Aitor; González-Basallote, Victor Manuel; Liu, Yan-Hu; Wang, Guo-Dong; Marques-Bonet, Tomas; Mirarab, Siavash; Fernandes, Carlos; Gaubert, Philippe; Koepfli, Klaus-Peter; Budd, Jane; Rueness, Eli Knispel; Heide-Jørgensen, Mads-Peter; Petersen, Bent; Sicheritz-Pontén, Thomas; Bachmann, Lutz; Wiig, Øystein; Hansen, Anders J.; Gilbert, Marcus Thomas Pius.
Interspecific gene flow shaped the evolution of the genus Canis. Current Biology 2018 ;Volum 28.(21) s. 3441-3449
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29 Leathlobhair, Máire Ní; Perri, Angela R.; Irving-Pease, Evan K.; Witt, Kelsey E.; Linderholm, Anna; Haile, James; Lebrasseur, Ophelie; Ameen, Carly; Blick, Jeffrey; Boyko, Adam R.; Brace, Selina; Cortes, Yahaira Nunes; Crockford, Susan J.; Devault, Alison; Dimopoulos, Evangelos A.; Eldridge, Morley; Enk, Jacob; Gopalakrishnan, Shyam; Gori, Kevin; Grimes, Vaughan; Guiry, Eric; Hansen, Anders J; Hulme-Beaman, Ardern; Johnson, John; Kitchen, Andrew; Kasparov, Aleksei K.; Kwon, Young-Mi; Nikolskiy, Pavel A.; Lope, Carlos Peraza; Manin, Aurélie; Martin, Terrance; Meyer, Michael; Myers, Kelsey Noack; Omura, Mark; Rouillard, Jean-Marie; Pavlova, Elena Y.; Sciulli, Paul; Sinding, Mikkel Holger Strander; Strakova, Andrea; Ivanova, Varvara V.; Widga, Christopher; Willerslev, Eske; Pitulko, Vladimir V.; Barnes, Ian; Gilbert, Marcus Thomas Pius; Dobney, Keith M.; Malhi, Ripan S.; Murchison, Elizabeth P.; Larson, Greger; Frantz, Laurent A.F..
The evolutionary history of dogs in the Americas. Science 2018 ;Volum 361.(6397) s. 81-85
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30 Sinding, Mikkel Holger Strander; Gopalakrishnan, Shyam; Vieira, Filipe G.; Samaniego, Jose A; Raundrup, Katrine; Heide Jørgensen, Mads Peter; Meldgaard, Morten; Petersen, Bent; Sicheritz-Ponten, Thomas; Mikkelsen, Johan Brus; Marquard-Petersen, Ulf; Dietz, Rune; Sonne, Christian; Dalén, Love; Bachmann, Lutz; Wiig, Øystein; Hansen, Anders J.; Gilbert, Marcus Thomas Pius.
Population genomics of grey wolves and wolf-like canids in North America. PLoS Genetics 2018 ;Volum 14:e1007745.(11) s. -
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31 Aizpurua, Ostaizka; Budinski, Ivana; Georgiakakis, Panagiotis; Gopalakrishnan, Shyam; Ibañez, Carlos; Mata, Vanessa A.; Rebelo, Hugo; Russo, Danilo; Szodoray-Parádi, Farkas; Zhelyakzova, Violeta; Zrncic, Vida; Gilbert, Marcus Thomas Pius; Alberdi, Antton.
Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding. Molecular Ecology 2018 ;Volum 27.(3) s. 815-825
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32 Alberdi, Antton; Aizpurua, Ostaizka; Bohmann, Kristine; Gopalakrishnan, Shyam; Lynggaard, Christina; Nielsen, Martin; Gilbert, Marcus Thomas Pius.
Promises and pitfalls of using high-throughput sequencing for diet analysis. Molecular Ecology Resources 2018 ;Volum 19.(2) s. 327-348
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33 Alberdi, Antton; Aizpurua, Ostaizka; Gilbert, Marcus Thomas Pius; Bohmann, Kristine.
Scrutinizing key steps for reliable metabarcoding of environmental samples. Methods in Ecology and Evolution 2018 ;Volum 9.(1) s. 134-147
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34 Barnett, Ross; Sinding, Mikkel Holger Strander; Vieira, Filipe G.; Mendoza, Marie Lisandra Zepeda; Bonnet, Matthieu; Araldi, Alessandro; Kienast, Ivonne; Zambarda, Alice; Yamaguchi, Nobuyuki; Henschel, Philipp; Gilbert, Marcus Thomas Pius.
No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon. Conservation Genetics 2018 ;Volum 19.(3) s. 611-618
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35 Bohmann, Kristine; Gopalakrishnan, Shyam; Nielsen, Martin; Bay Nielsen, Luisa dos Santos; Jones, Gareth; Streicker, Daniel G.; Gilbert, Marcus Thomas Pius.
Using DNA metabarcoding for simultaneous inference ofcommon vampire bat diet and population structure. Molecular Ecology Resources 2018 ;Volum 18.(5) s. 1050-1063
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36 Carøe, Christian; Gopalakrishnan, Shyam; Vinner, Lasse; Mak, Sarah S.T.; Sinding, Mikkel Holger Strander; Samaniego, Jose A; Wales, Nathan; Sicheritz-Pontén, Thomas; Gilbert, Marcus Thomas Pius.
Singe-tube library preparation for degraded DNA. Methods in Ecology and Evolution 2018 ;Volum 9.(2) s. 410-419
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37 Drinkwater, Rosie; Schnell, Ida Bærholm; Bohmann, Kristine; Bernard, Henry; Veron, Géraldine; Clare, Elizabeth; Gilbert, Marcus Thomas Pius; Rossiter, Stephen J..
Using metabarcoding to compare the suitability of two blood‐feeding leech species for sampling mammalian diversity in North Borneo. Molecular Ecology Resources 2018 s. 1-13
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38 Ebenesersdóttir, Sigríður Sunna; Sandoval-Velasco, Marcela; Gunnarsdóttir, Ellen D.; Jagadeesan, Anuradha; Guðmundsdóttir, Valdís B.; Thordardóttir, Elísabet L.; Einarsdóttir, Margrét S.; Moore, Kristjan H. S.; Sigurðsson, Ásgeir; Magnúsdóttir, Droplaug N.; Jónsson, Hákon; Snorradóttir, Steinunn; Hovig, Eivind; Møller, Pål; Kockum, Ingrid; Olsson, Tomas; Alfredsson, Lars; Hansen, Thomas F.; Werge, Thomas; Cavalleri, Gianpiero L.; Gilbert, Edmund; Lalueza-Fox, Carles; Walser III, Joe W.; Kristjánsdóttir, Steinunn; Gopalakrishnan, Shyam; Arnadottir, Lilja; Magnússon, Ólafur Þ.; Gilbert, Marcus Thomas Pius; Stefánsson, Kári; Helgason, Agnar.
Ancient genomes from Iceland reveal the making of a human population. Science 2018 ;Volum 360.(6392) s. 1028-1032
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39 Fietz, Katharina; Hintze, Christian O.R.; Skovrind, Mikkel; Nielsen, Tue Kjærgaard; Limborg, Morten; Krag, Marcus A.; Palsbøll, Per J.; Hansen, Lars Hestbjerg; Møller, Peter Rask; Gilbert, Marcus Thomas Pius.
Mind the gut: genomic insights to population divergence and gut microbial composition of two marine keystone species. Microbiome 2018 ;Volum 6.(82) s. -
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40 Holt, Carson; Campbell, Michael; Keays, David Anthony; Edelman, Nathaniel; Kapusta, Aurélie; Maclary, Emily; Domyan, Eric T.; Suh, Alexander; Warren, Wesley C.; Yandell, Mark; Gilbert, Marcus Thomas Pius; Shapiro, Michael D..
Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia). G3: Genes, Genomes, Genetics 2018 ;Volum 8.(5) s. 1391-1398
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41 Hooper, Rebecca; Brealey, Jaelle C.; van der Valk, Tom; Alberdi, Antton; Durban, John; Fearnbach, Holly; Robertson, Kelly M.; Baird, Robin; Hanson, M. Bradley; Wade, Paul; Gilbert, Marcus Thomas Pius; Morin, Phillip; Wolf, Jochen B.W.; Foote, Andrew D.; Guschanski, Katerina.
Host‐derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin. Molecular Ecology 2018 s. -
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42 Kistler, Logan; Maezumi, S. Yoshi; de Souza, Jonas Gregorio; Przelomska, Natalia A.S.; Costa, Flaviane Malaquias; Smith, Oliver; Loiselle, Hope; Ramos-Madrigal, Jazmín; Wales, Nathan; Ribeiro, Eduardo Rivail; Morrison, Ryan R.; Grimaldo, Claudia; Prous, Andre P.; Arriaza, Bernardo; Gilbert, Marcus Thomas Pius; de Oliveira Freitas, Fabio; Allaby, Robin G..
Multiproxy evidence highlights a complex evolutionary legacy of maize in South America. Science 2018 ;Volum 362.(6420) s. 1309-1313
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43 Kodama, Miyako; Brinch-Pedersen, Henrik; Sharma, Shrikant; Holme, Inger B.; Joernsgaard, Bjarne; Dzhanfezova, Tsaneta; Amby, Daniel Buchvaldt; Vieira, Filipe G.; Liu, Shanlin; Gilbert, Marcus Thomas Pius.
Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq. BMC Genomics 2018 ;Volum 19.(811) s. -
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44 Lewin, Harris A.; Robinson, Gene E.; Kress, W. John; Baker, William J.; Coddington, Jonathan; Crandall, Keith A.; Durbin, Richard; Edwards, Scott V.; Forest, Félix; Gilbert, Marcus Thomas Pius; Goldstein, Melissa M.; Grigoriev, Igor V.; Hackett, Kevin J.; Haussler, David; Jarvis, Erich D.; Johnson, Warren E.; Patrinos, Aristides; Richards, Stephen; Castilla-Rubio, Juan Carlos; van Sluys, Marie-Anne; Soltis, Pamela S.; Xu, Xun; Yang, Huanming; Zhang, Guojie.
Earth BioGenome Project: Sequencing life for the future of life. Proceedings of the National Academy of Sciences of the United States of America 2018 ;Volum 115.(17) s. 4325-4333
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45 Limborg, Morten T.; Alberdi, Antton; Kodama, Miyako; Roggenbuck, Michael; Kristiansen, Karsten; Gilbert, Marcus Thomas Pius.
Applied Hologenomics: Feasibility and Potential in Aquaculture. Trends in Biotechnology 2018 ;Volum 36.(3) s. 252-264
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46 Schnell, Ida Bærholm; Bohmann, Kristine; Schultze, Sebastian E.; Richter, Stine R.; Murray, Daíthí C.; Sinding, Mikkel-Holger; Bass, David; Cadle, John E.; Campbell, Mason; Dolch, Rainer; Edwards, David P.; Gray, Thomas N.E.; Hansen, Teis; Quang Hoa, Anh Nguyen; Lehmkuhl Noer, Christina; Heise-Pavlov, Sigrid; Pedersen, Adam F. Sander; Ramamonjisoa, Juliot Carl; Siddall, Mark; Tilker, Andrew; Traeholt, Carl; Wilkinson, Nicholas; Woodcock, Paul; Yu, Douglas W.; Bertelsen, Mads Frost; Bunce, Michael; Gilbert, Marcus Thomas Pius.
Debugging diversity–a pan-continental exploration of the potential of terrestrial blood-feeding leeches as a vertebrate monitoring tool. Molecular Ecology Resources 2018 ;Volum 18.(6) s. 1282-1298
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47 Teeling, E.; Vernes, S.; Davalos, L.M.; Ray, D.A.; Gilbert, Marcus Thomas Pius; Myers, E.
Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for All Living Bat Species. Annual Review of Animal Biosciences 2018 ;Volum 6. s. 23-46
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48 Zepeda Mendoza, M. Lisandra; Roggenbuck, Michael; Manzano Vargas, Karla; Hestbjerg Hansen, Lars; Brunak, Søren; Gilbert, Marcus Thomas Pius; Sicheritz-Ponten, Thomas.
Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging. Acta Veterinaria Scandinavica 2018 ;Volum 60. s. 1-19
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49 Zepeda Mendoza, M. Lisandra; Xiong, Zijun; Escalera-Zamudio, Marina; Runge, Anne Kathrine; Théze, Julien; Streicker, Daniel; Frank, Hannah K.; Loza-Rubio, Elizabeth; Liu, Shengmao; Ryder, Oliver A.; Samaniego Castruita, José Alfredo; Katzourakis, Aris; Pacheco, George; Taboada, Blanca; Löber, Ulrike; Pybus, Oliver G.; Li, Yang; Rojas-Anaya, Edith; Bohmann, Kristine; Carmona Baez, Aldo; Arias, Carlos F.; Liu, Shiping; Greenwood, Alex D.; Bertelsen, Mads F.; White, Nicole E.; Bunce, Michael; Zhang, Guojie; Sicheritz-Ponten, Thomas; Gilbert, Marcus Thomas Pius.
Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat. Nature Ecology and Evolution 2018 ;Volum 2.(4) s. 659-668
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50 Zhou, Zhemin; Lundstrøm, Inge K. C.; Tran-Dien, Alicia; Duchêne, Sebastián; Alikhan, Nabil-Fareed; Sergeant, Martin J.; Langridge, Gemma; Fotakis, Anna K.; Nair, Satheesh; Stenøien, Hans K.; Suppersberger Hamre, Stian; Casjens, Sherwood; Christophersen, Axel; Quince, Christopher; Thomson, Nicholas R.; Weill, François-Xavier; Ho, Simon Y. W.; Gilbert, Marcus Thomas Pius; Achtman, Mark.
Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia. Current Biology 2018
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