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2022
1 Henriet, Simon Raymond; Aasjord, Anne; Chourrout, Daniel Marc.
Laboratory study of Fritillaria lifecycle reveals key morphogenetic events leading to genus-specific anatomy. Frontiers in Zoology 2022 ;Volum 19:26. s. 1-14
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2021
2 Martín-Durán, José M.; Vellutini, Bruno Cossermelli; Marlétaz, Ferdinand; Cetrangolo, Viviana; Cvetesic, Nevena; Thiel, Daniel; Henriet, Simon Raymond; Grau-Bové, Xavier; Carrillo-Baltodano, Allan M.; Gu, Wenjia; Kerbl, Alexandra; Marquez, Yamile; Bekkouche, Nicolas; Chourrout, Daniel Marc; Gómez-Skarmeta, Jose Luis; Irimia, Manuel; Lenhard, Boris; Worsaae, Katrine; Hejnol, Andreas.
Publisher Correction: Conservative route to genome compaction in a miniature annelid (Nature Ecology & Evolution, (2021), 5, 2, (231-242), 10.1038/s41559-020-01327-6). Nature Ecology and Evolution 2021 ;Volum 5.(2) s. 262-
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2020
3 Martin Duran, Jose Maria; Vellutini, Bruno Cossermelli; Marletaz, Ferdinand; Cetrangolo, Viviana; Cvetesic, Nevena; Thiel, Daniel; Henriet, Simon; Grau-Bové, Xavier; Carrillo-Baltodano, Allan M.; Gu, Wenjia; Kerbl, Alexandra; Marquez, Yamile; Bekkouche, Nicolas; Chourrout, Daniel; Gómez-Skarmeta, José Luis; Irimia, Manuel; Lenhard, Boris; Worsaae, Katrine; Hejnol, Andreas.
Conservative route to genome compaction in a miniature annelid. Nature Ecology and Evolution 2020 ;Volum 5. s. 231-242
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2019
4 Henriet, Simon; Colom Sanmarti, Berta; Sumic, Sara; Chourrout, Daniel.
Evolution of the U2 Spliceosome for Processing Numerous and Highly Diverse Non-canonical Introns in the Chordate Fritillaria borealis. Current Biology 2019 ;Volum 29.(19) s. 3193-3199.e4
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2018
5 Deng, Wei; Henriet, Simon; Chourrout, Daniel.
Prevalence of Mutation-Prone Microhomology-Mediated End Joining in a Chordate Lacking the c-NHEJ DNA Repair Pathway. Current Biology 2018 ;Volum 28.(20) s. 3337-3341
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6 Mikhaleva, Yana; Skinnes, Ragnhild; Sumic, Sara; Thompson, Eric; Chourrout, Daniel.
Development of the house secreting epithelium, a major innovation of tunicate larvaceans, involves multiple homeodomain transcription factors. Developmental Biology 2018 ;Volum 443.(2) s. 117-126
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7 Olsen, Lisbeth Charlotte; Kourtesis, Ioannis Or John; Busengdal, Henriette; Jensen, Marit Flo; Hausen, Harald; Chourrout, Daniel.
Evidence for a centrosome-attracting body like structure in germ-soma segregation during early development, in the urochordate Oikopleura dioica. BMC Developmental Biology 2018 ;Volum 18.(4) s. -
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2017
8 Wang, Shi; Zhang, Jinbo; Jiao, Wenqian; Li, Ji; Xun, Xiaogang; Sun, Yan; Guo, Ximing; Huan, Pin; Dong, Bo; Zhang, Lingling; Hu, Xiaoli; Sun, Xiaoping; Wang, Jing; Zhao, Chengtian; Wang, Yangfan; Wang, Dawei; Huang, Xiaoting; Wang, Ruijia; Lv, Jia; Li, Yuli; Zhang, Zhifeng; Liu, Baozhong; Lu, Wei; Hui, Yuanyuan; Liang, Jun; Zhou, Zunchun; Hou, Rui; Li, Xue; Liu, Yunchao; Li, Hengde; Ning, Xianhui; Lin, Yu; Zhao, Liang; Xing, Qiang; Dou, Jinzhuang; Li, Yangping; Mao, Junxia; Guo, Haobing; Dou, Huaiqian; Li, Tianqi; Mu, Chuang; Jiang, Wenkai; Fu, Qiang; Fu, Xiaoteng; Miao, Yan; Liu, Jian; Yu, Qian; Li, Ruojiao; Liao, Huan; Li, Xuan; Kong, Yifan; Jiang, Zhi; Chourrout, Daniel; Li, Ruiqiang; Bao, Zhenmin.
Scallop genome provides insights into evolution of bilaterian karyotype and development. Nature Ecology and Evolution 2017 ;Volum 1.(5)
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2016
9 Mikhaleva, Yana.
Contribution of homeobox genes to the development of the oikoplastic epithelium, a major novelty of tunicate Larvaceans. : Universitetet i Bergen 2016 (ISBN 978-82-308-3204-2)
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2015
10 Henriet, Simon; Sumic, Sara; Doufoundou-Guilengui, Carletta; Jensen, Marit Flo; Grandmougin, Camille; Fal, Kateryna; Thompson, Eric; Volff, Jean-Nicolas; Chourrout, Daniel.
Embryonic expression of endogenous retroviral RNAs in somatic tissues adjacent to the Oikopleura germline. Nucleic Acids Research (NAR) 2015 ;Volum 43.(7) s. 3701-3711
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11 Marti-Solans, Josep; Ferrandez-Roldan, Alfonso; Godoy-Marin, Hector; Badia-Ramentol, Jordi; Torres-Aguila, Nuria P; Rodriguez-Mari, Adriana; Bouquet, Jean-Marie; Chourrout, Daniel; Thompson, Eric; Albalat, Ricard; Canestro, Cristian.
Oikopleura dioica culturing made easy: A Low-Cost facility for an emerging animal model in EvoDevo. Genesis 2015 ;Volum 53.(1) s. 183-193
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12 Mikhaleva, Yana; Kreneisz, Orsolya; Olsen, Lisbeth Charlotte; Glover, Joel; Chourrout, Daniel.
Modification of the larval swimming behavior in Oikopleura dioica, a chordate with a miniaturized central nervous system by dsRNA injection into fertilized eggs. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution 2015 ;Volum 324.(2) s. 114-127
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2013
13 Danks, Gemma Barbara; Campsteijn, Coen; Parida, Mruyunjaya; Butcher, Stephen; Doddapaneni, Harsha; Fu, Bolei; Petrin, Raul; Metpally, Raghu; Lenhard, Boris; Wincker, Patrick; Chourrout, Daniel; Thompson, Eric; Manak, J Robert.
OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica. Nucleic Acids Research (NAR) 2013 ;Volum 41.(D1) s. D845-D853
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2012
14 Yadetie, Fekadu; Butcher, Stephen; Førde, Hilde Elise Sundsøy; Campsteijn, Coen; Bouquet, Jean-Marie; Karlsen, Odd Andre; Denoeud, France; Metpally, Raghu; Thompson, Eric; Manak, J Robert; Goksøyr, Anders; Chourrout, Daniel.
Conservation and divergence of chemical defense system in the tunicate Oikopleura dioica revealed by genome wide response to two xenobiotics. BMC Genomics 2012 ;Volum 13. s. -
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2011
15 Angotzi, Anna Rita; Mungpakdee, Sutada; Stefansson, Sigurd Olav; Male, Rune; Chourrout, Daniel.
Involvement of Prop1 homeobox gene in the early development of fish pituitary gland. General and Comparative Endocrinology 2011 ;Volum 171.(3) s. 332-340
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2010
16 Denoeud, France; Henriet, Simon; Mungpakdee, Sutada; Aury, Jean-Marc; Da Silva, Corinne; Brinkmann, Henner; Mikhaleva, Iana; Olsen, Lisbeth Charlotte; Jubin, Claire; Canestro, Cristian; Bouquet, Jean-Marie; Danks, Gemma Barbara; Poulain, Julie; Campsteijn, Coen; Adamski, Marcin; Cross, Ismael; Yadetie, Fekadu; Muffato, Matthieu; Louis, Alexandra; Butcher, Stephen; Tsagkogeorga, Georgia; Konrad, Anke; Singh, Sarabdeep; Jensen, Marit Flo; Cong, Evelyne Huynh; Otterå, Helen Eikeseth; Noel, Benjamin; Anthouard, Veronique; Porcel, Betina M; Kachouri-Lafond, Rym; Nishino, Atsuo; Ugolini, Matteo; Chourrout, Pascal; Nishida, Hiroki; Aasland, Rein; Huzurbazar, Snehalata; Westhof, Eric; Delsuc, Frédéric; Lehrach, Hans; Reinhardt, Richard; Weissenbach, Jean; Roy, Scott W; Artiguenave, Francois; Postlethwait, John H; Manak, J Robert; Thompson, Eric; Jaillon, Olivier; Du Pasquier, Louis; Boudinot, Pierre; Liberles, David A; Volff, Jean-Nicolas; Philippe, Hervé; Lenhard, Boris; Crollius, Hugues Roest; Wincker, Patric; Chourrout, Daniel.
Plasticity of Animal Genome Architecture Unmasked by Rapid Evolution of a Pelagic Tunicate. Science 2010 ;Volum 330.(6009) s. 1381-1385
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2009
17 Bouquet, Jean-Marie; Spriet, Endy; Troedsson, Christofer; Otterå, Helen Eikeseth; Chourrout, Daniel; Thompson, Eric.
Culture optimization for the emergent zooplanktonic model organism Oikopleura dioica. Journal of Plankton Research 2009 ;Volum 21.(4) s. 359-370
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2008
18 Angotzi, Anna Rita; Ersland, Kari Merete; Mungpakdee, Sutada; Stefansson, Sigurd; Chourrout, Daniel.
Independent and dynamic reallocation of pitx gene expression during vertebrate evolution, with emphasis on fish pituitary development. Gene 2008 ;Volum 417.(1-2) s. 19-26
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19 Mungpakdee, Sutada; Seo, Hee-Chan; Angotzi, Anna Rita; Dong, Xianjun; Akalin, Altuna; Chourrout, Daniel.
Differential evolution of the 13 Atlantic salmon Hox clusters. Molecular Biology and Evolution (MBE) 2008 ;Volum 25.(7) s. 1333-1343
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20 Mungpakdee, Sutada; Seo, Hee-Chan; Chourrout, Daniel.
Spatio-temporal expression patterns of anterior Hox genes in Atlantic salmon (Salmo salar). Gene Expression Patterns 2008 ;Volum 8.(7-8) s. 508-514
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2007
21 Bernardi, Giorgio; Boyen, Catharina; Chourrout, Daniel.
Special issue: Marine genomics - Foreword. Gene 2007 ;Volum 406.(1-2) s. VII-VII
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22 Schuettengruber, Bernd; Chourrout, Daniel; Vervoort, Michel; Leblanc, Benjamin; Cavalli, Giacomo.
Genome regulation by polycomb and trithorax proteins. Cell 2007 ;Volum 128.(4) s. 735-745
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23 Søviknes, Anne Mette; Chourrout, Daniel; Glover, Joel.
Development of the caudal nerve cord, motoneurons, and muscle innervation in the appendicularian urochordate Oikopleura dioica. Journal of Comparative Neurology 2007 ;Volum 503.(2) s. 224-243
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2006
24 Chourrout, Daniel; Delsuc, Frédéric; Chourrout, P; Edvardsen, Rolf; Rentzsch, Fabian; Renfer, Eduard; Jensen, Marit Flo; Zhu, Baoli; De Jong, Pieter; Steele, Robert E.; Technau, Ulrich.
Minimal ProtoHox cluster inferred from bilaterian and cnidarian Hox complements. Nature 2006 ;Volum 442. s. 684-687
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25 Delsuc, Frédéric; Brinkmann, Henner; Chourrout, Daniel; Philippe, Hervé.
Tunicates and not cephalochordates are the closest living relatives of vertebrates. Nature 2006 ;Volum 439.(7079) s. 965-968
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2005
26 Edvardsen, Rolf.
Rapid genome evolution in the urochordate lineage of Oikopleura dioica. Universitetet i Bergen 2005 (ISBN 82-7653-034-6) 80 s.
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27 Edvardsen, Rolf; Seo, Hee-Chan; Jensen, Marit Flo; Mialon, Antoine; Mikhaleva, Iana; Bjørdal, Marianne; Cartry, Jerome; Reinhardt, Richard; Weissenbach, Jean; Wincker, Patric; Chourrout, Daniel.
Remodelling of the homeobox gene complement in the tunicate Oikopleura dioica. Current Biology 2005 ;Volum 15.(R) s. 12-13
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28 Søviknes, Anne Mette; Chourrout, Daniel; Glover, Joel.
Development of putative GABAergic neurons in the appendicularian urochordate Oikopleura dioica. Journal of Comparative Neurology 2005 ;Volum 490.(1) s. 12-28
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29 Weill, M; Philips, A; Chourrout, Daniel; Fort, P.
The caspase family in urochordates: distinct evolutionary fates in ascidians and larvaceans. Biology of the Cell 2005 ;Volum 97.(11) s. 857-866
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2004
30 Edvardsen, Rolf; Lerat, Emanuelle; Mæland, Anne Dorthea; Flåt, Mette; Tewari, Rita; Jensen, Marit Flo; Lehrach, Hans; Reinhardt, Richard; Seo, Hee-Chan; Chourrout, Daniel.
Hypervariable and Highly Divergent Intron/Exon Organizations in The Chordate Oikopleura dioica. Journal of Molecular Evolution 2004 ;Volum 59. s. 448-457
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31 Ganot, Philippe Jorgen; Kallesøe, Torben; Reinhardt, Richard; Chourrout, Daniel; Thompson, Eric.
Spliced-leader RNA trans splicing in a chordate, Oikopleura dioica, with a compact genome. Molecular and Cellular Biology 2004 (24) s. 7795-7805
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32 Seo, Hee-Chan; Edvardsen, Rolf; Mæland, Anne Dorthea; Bjørdal, Marianne; Jensen, Marit Flo; Hansen, Anette H.; Flåt, Mette; Weissenbach, Jean; Lehrach, Hans; Wincker, Patric; Reinhardt, Richard; Chourrout, Daniel.
Hox cluster disintegration with persistent anteroposterior order of expression in Oikopleura dioica. Nature 2004 ;Volum 431. s. 67-71
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33 Volff, Jean-Nicolas; Lehrach, Hans; Reinhardt, Richard; Chourrout, Daniel.
Retroelement dynamics and a novel type of chordate retrovirus-like elements in the miniature genome of the tunicate Oikopleura dioica. Molecular Biology and Evolution (MBE) 2004 (21) s. 2022-2033
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2003
34 Uzbekova, S; Amoros, C; Cauty, C; Mambrini, M; Perrot, E; Hew, CL; Chourrout, Daniel; Prunet, P.
Analysis of cell-specificity and variegation of transgene expression driven by salmon prolactin promoter in stable lines of transgenic rainbow trout. Transgenic research 2003 ;Volum 12. s. 213-227
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35 Nilsen, Inge Waller; Myrnes, Bjørnar; Edvardsen, Rolf; Chourrout, Daniel.
Urochordates carry multiple genes for goose-type lysozyme and no genes for chicken- or invertebrate-type lysozymes. Cellular and Molecular Life Sciences (CMLS) 2003 ;Volum 60. s. 2210-2218
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2001
36 Seo, Hee-Chan; Kube, M; Edvardsen, Rolf; Jensen, Marit Flo; Beck, A; Spriet, Endy; Gorsky, Gabriel; Thompson, Eric; Lehrach, Hans; Reinhardt, Richard; Chourrout, Daniel.
Miniature genome in the marine chordate Oikopleura dioica. Science 2001 ;Volum 294. s. 2506-
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2000
37 Fu, L; Mambrini, M; Perrot, E; Chourrout, Daniel.
Stable and full rescue of the pigmentation in a medaka albino mutant by transfer of a 17 kb genomic clone containing the medaka tyrosinase gene. Gene 2000 ;Volum 241. s. 205-211
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1999
38 Deschet, K; Bourrat, F; Ristoratore, F; Chourrout, Daniel; Joly, J S.
Expression of the medaka (Oryzias latipes) Ol-Rx3 paired-like gene in two diencephalic derivatives, the eye and the hypothalamus. Mechanisms of Development 1999 ;Volum 83. s. 179-182
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39 Joly, J S; Kress, C; Vandeputte, M; Bourrat, F; Chourrout, Daniel.
Irradiation of Fish Embryos Prior to Blastomere Transfer Boosts the Colonisation of their Gonads by Donor-Derived Gametes. Molecular Reproduction and Development 1999 ;Volum 53. s. 394-397
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40 Nguyen, V; Deschet, K; Loosli, F; Godet, F; Joly, J S; Wittbrodt, J; Chourrout, Daniel; Bourrat, F.
Morphogenesis of the optic tectum in the medaka (Oryzias latipes): a morphological and molecular study, with special emphasis on cell proliferation. Journal of Comparative Neurology 1999 ;Volum 413. s. 385-404
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41 Ristoratore, F; Carl, M; Deschet, K; Richard-Parpaillon, L; Boujard, D; Wittbrodt, J; Chourrout, Daniel; Bourrat, F; Joly, J S.
The midbrain-hindbrain boundary genetic cascade is activated ectopically in the diencephalon in response to the widespread expression of one of its components, the medaka gene Ol-eng2. Development 1999 ;Volum 126. s. 3769-3779
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