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2021
1 Aasebø, Elise; Brenner, Annette; Birkeland, Even; Tvedt, Tor Henrik Anderson; Selheim, Frode; Berven, Frode Steingrimsen; Bruserud, Øystein.
The constitutive extracellular protein release by acute myeloid leukemia cells—A proteomic study of patient heterogeneity and its modulation by mesenchymal stromal cells. Cancers 2021 ;Volum 13.(7) s. -
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2 Aasebø, Elise; Brenner, Annette; Hernandez-Valladares, Maria; Birkeland, Even; Berven, Frode Steingrimsen; Selheim, Frode; Bruserud, Øystein.
Proteomic comparison of bone marrow derived osteoblasts and mesenchymal stem cells. International Journal of Molecular Sciences 2021 ;Volum 22.(11)
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3 Aasebø, Elise; Brenner, Annette; Hernandez-Valladares, Maria; Birkeland, Even; Mjaavatten, Olav; Reikvam, Håkon; Selheim, Frode; Berven, Frode Steingrimsen; Bruserud, Øystein.
Patient Heterogeneity in Acute Myeloid Leukemia: Leukemic Cell Communication by Release of Soluble Mediators and Its Effects on Mesenchymal Stem Cells. Diseases 2021 ;Volum 9.(74)
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4 Aasebø, Elise; Brenner, Annette; Hernandez-Valladares, Maria; Birkeland, Even; Reikvam, Håkon; Selheim, Frode; Berven, Frode Steingrimsen; Bruserud, Øystein.
Proteomic Characterization of Spontaneous Stress-Induced In Vitro Apoptosis of Human Acute Myeloid Leukemia Cells; Focus on Patient Heterogeneity and Endoplasmic Reticulum Stress. Hemato 2021 ;Volum 2.(3) s. 607-627
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5 Grønningsæter, Ida Sofie; Reikvam, Håkon; Aasebø, Elise; Bartaula-Brevik, Sushma; Hernandez‐valladares, Maria; Selheim, Frode; Berven, Frode Steingrimsen; Tvedt, Tor Henrik; Bruserud, Øystein; Hatfield, Kimberley Joanne.
Effects of the autophagy‐inhibiting agent chloroquine on acute myeloid leukemia cells; characterization of patient heterogeneity. Journal of Personalized Medicine 2021 ;Volum 11.(8) s. 1-23
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6 Mosleth, Ellen Færgestad; Vedeler, Christian Alexander; Liland, Kristian Hovde; McLeod, Anette; Bringeland, Gerd Haga; Kroondijk, Liesbeth; Berven, Frode Steingrimsen; Lysenko, Artem; Rawlings, Christopher J.; El-Hajj Eid, Karim; Opsahl, Jill Anette; Gjertsen, Bjørn Tore; Myhr, Kjell-Morten; Gavasso, Sonia.
Cerebrospinal fluid proteome shows disrupted neuronal development in multiple sclerosis. Scientific Reports 2021 ;Volum 11. s. -
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7 Oveland, Eystein; Ahmad, Intakhar; Lereim, Ragnhild Reehorst; Kroksveen, Ann Cathrine; Barsnes, Harald; Guldbrandsen, Astrid; Myhr, Kjell-Morten; Bø, Lars; Berven, Frode Steingrimsen; Wergeland, Stig.
Cuprizone and EAE mouse frontal cortex proteomics revealed proteins altered in multiple sclerosis. Scientific Reports 2021 ;Volum 11.(1) s. -
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8 Røberg-Larsen, Hanne; Lundanes, Elsa; Nyman, Tuula Anneli; Berven, Frode Steingrimsen; Wilson, Steven Ray Haakon.
Liquid chromatography, a key tool for the advancement of single-cell omics analysis. Analytica Chimica Acta 2021 ;Volum 1178:338551. s. 1-9
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2020
9 Aasebø, Elise; Berven, Frode; Bartaula-Brevik, Sushma; Stokowy, Tomasz; Hovland, Randi; Vaudel, Marc; Døskeland, Stein Ove; Mc Cormack, Emmet; Batth, Tanveer S; Olsen, Jesper V; Bruserud, Øystein; Selheim, Frode; Hernandez-Valladares, Maria.
Proteome and Phosphoproteome Changes Associated with Prognosis in Acute Myeloid Leukemia. Cancers 2020 ;Volum 12.(3)
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10 Aasebø, Elise; Berven, Frode; Hovland, Randi; Doskeland, Stein Ove; Bruserud, Øystein; Selheim, Frode; Hernandez-Valladares, Maria.
The progression of acute myeloid leukemia from first diagnosis to chemoresistant relapse: A comparison of proteomic and phosphoproteomic profiles. Cancers 2020 ;Volum 12.(6) s. 1-13
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11 Aasebø, Elise; Birkeland, Even; Selheim, Frode; Berven, Frode; Brenner, Annette; Bruserud, Øystein.
The extracellular bone marrow microenvironment — a proteomic comparison of constitutive protein release by in vitro cultured osteoblasts and mesenchymal stem cells. Cancers 2020 ;Volum 13.(1)
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12 Guldbrandsen, Astrid; Lereim, Ragnhild Reehorst; Jacobsen, Mari; Garberg, Hilde Kristin; Kroksveen, Ann Cathrine; Barsnes, Harald; Berven, Frode.
Development of robust targeted proteomics assays for cerebrospinal fluid biomarkers in multiple sclerosis. Clinical Proteomics 2020 ;Volum 17:33. s. 1-21
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13 Haaland, Ingvild; Aardal, Marit Elisabeth; Berven, Frode Steingrimsen; Vaudel, Marc; Nielsen, Rune; Aanerud, Marianne; Hardie, Jon Andrew; Bakke, Per S.; Eagan, Tomas Mikal Lind.
Changes in the induced sputum proteome during COPD exacerbations. European Respiratory Journal 2020
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14 Hernandez-Valladares, Maria; Aasebø, Elise; Berven, Frode; Selheim, Frode; Bruserud, Øystein.
Biological characteristics of aging in human acute myeloid leukemia cells: the possible importance of aldehyde dehydrogenase, the cytoskeleton and altered transcriptional regulation. Aging 2020 ;Volum 12.(24) s. 24734-24777
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2019
15 Aasebø, Elise; Berven, Frode; Bartaula-Brevik, Sushma; Stokowy, Tomasz; Hovland, Randi; Vaudel, Marc; Døskeland, Stein Ove; Mc Cormack, Emmet; Batth, Tanveer S; Olsen, Jesper V; Bruserud, Øystein; Selheim, Frode; Hernandez-Valladares, Maria.
Proteome and phosphoproteome changes associated with prognosis in acute myeloid leukemia. bioRxiv - the preprint server for biology 2019
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16 Aasebø, Elise; Hernandez-Valladares, Maria; Selheim, Frode; Berven, Frode; Brenner, Annette; Bruserud, Øystein.
Proteomic profiling of primary human acute myeloid leukemia cells does not reflect their constitutive release of soluble mediators. Proteomes 2019 ;Volum 7.(1) s. 1-10
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17 Ahmad, Rushdy; Xie, Liangxia; Pyle, Margaret; Suarez, Marta F.; Broger, Tobias; Steinberg, Dan; Ame, Shaali M.; Lucero, Marilla G.; Szucs, Matthew J.; MacMullan, Melanie; Berven, Frode; Dutta, Arup; Sanvictores, Diozele M.; Tallo, Veronica L.; Bencher, Robert; Eisinger, Dominic P.; Dhingra, Usha; Deb, Saikat; Ali, Said M.; Mehta, Saurabh; Fawzi, Wafaie W.; Riley, Ian D.; Sazawal, Sunil; Premji, Zul; Black, Robert; Murray, Christopher J.L.; Rodriguez, Bill; Carr, Steven A.; Walt, David R.; Gillette, Michael A..
A rapid triage test for active pulmonary tuberculosis in adult patients with persistent cough. Science Translational Medicine 2019 ;Volum 11.(515)
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18 Berge, Tone; Eriksson, Anna; Brorson, Ina S; Høgestøl, Einar A; Berg-Hansen, Pål; Døskeland, Anne Marie Simonne; Mjaavatten, Olav; Bos, Steffan Daniel; Harbo, Hanne F.; Berven, Frode.
Quantitative proteomic analyses of CD4+ and CD8+ T cells reveal differentially expressed proteins in multiple sclerosis patients and healthy controls.. European Committee for Treatment and research in Multiple Scleroses; 2019-09-11 - 2019-09-13
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19 Berge, Tone; Eriksson, Anna; Brorson, Ina Skaara; Høgestøl, Einar August; Berg-Hansen, Pål; Døskeland, Anne Marie Simonne; Mjaavatten, Olav; Bos, Steffan Daniel; Harbo, Hanne Flinstad; Berven, Frode.
Quantitative proteomic analyses of CD4+ and CD8+ T cells reveal differentially expressed proteins in multiple sclerosis patients and healthy controls. Clinical Proteomics 2019 ;Volum 16:19. s. 1-18
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20 Brenner, Annette; Aasebø, Elise; Hernandez-Valladares, Maria; Selheim, Frode; Berven, Frode; Grønningsæter, Ida Sofie; Bartaula-Brevik, Sushma; Bruserud, Øystein.
The capacity of long-term in vitro proliferation of acute myeloid leukemia cells supported only by exogenous cytokines is associated with a patient subset with adverse outcome. Cancers 2019 ;Volum 11:73. s. 1-22
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21 Burger, Bram; Lereim, Ragnhild Reehorst; Berven, Frode; Barsnes, Harald.
Detecting single amino acids and small peptides by combining isobaric tags and peptidomics. European Journal of Mass Spectrometry 2019
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22 Guldbrandsen, Astrid; Farag, Yehia Mohamed Mokhtar; Lereim, Ragnhild Reehorst; Berven, Frode; Barsnes, Harald.
Essential Features and Use Cases of the Cerebrospinal Fluid Proteome Resource (CSF-PR). I: Cerebrospinal Fluid (CSF) Proteomics. Humana Press 2019 ISBN 978-1-4939-9706-0. s. 377-391
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23 Hernandez-Valladares, Maria; Wangen, Rebecca; Berven, Frode; Guldbrandsen, Astrid.
Protein post-translational modification crosstalk in acute myeloid leukemia calls for action. Current Medicinal Chemistry 2019 ;Volum 26.(28) s. 5317-5337
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24 Nepstad, Ina; Hatfield, Kimberley Joanne; Grønningsæter, Ida Sofie; Aasebø, Elise; Hernandez-Valladares, Maria; Hagen, Karen Marie; Rye, Kristin Paulsen; Berven, Frode; Selheim, Frode; Reikvam, Håkon; Bruserud, Øystein.
Effects of insulin and pathway inhibitors on the PI3K-Akt-mTOR phosphorylation profile in acute myeloid leukemia cells.. Signal Transduction and Targeted Therapy 2019
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25 Teodora, Paunas Flavia; Finne, Kenneth; Leh, Sabine Maria; Osman, Tarig Al-Hadi; Marti, Hans-Peter; Berven, Frode; Vikse, Bjørn Egil.
Characterization of glomerular extracellular matrix in IgA nephropathy by proteomic analysis of laser-captured microdissected glomeruli. BMC Nephrology 2019 ;Volum 20. s. 1-12
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26 Zhang-James, Yanli; Vaudel, Marc; Mjaavatten, Olav; Berven, Frode; Haavik, Jan; Faraone, Stephen V..
Effect of disease-associated SLC9A9 mutations on protein–protein interaction networks: implications for molecular mechanisms for ADHD and autism. ADHD Attention Deficit and Hyperactivity Disorders 2019 ;Volum 11.(1) s. 91-105
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2018
27 Berge, Tone; Brorson, Ina Skaara; Høgestøl, Einar August; Bos, Steffan Daniel; Harbo, Hanne Flinstad; Berven, Frode.
Proteomic profiling of CD4+ and CD8+ T cells from multiple sclerosis patients and healthy controls. The Biology of the genome; 2018-05-08 - 2018-05-12
OSLOMET OUS UiB UiO Untitled
 
28 Berge, Tone; Eriksson, Anna; Brorson, Ina Skaara; Høgestøl, Einar August; Bos, Steffan Daniel; Harbo, Hanne Flinstad; Berven, Frode.
Proteomic profiling of CD4+ and CD8+ T cells from multiple sclerosis patients and healthy controls. Biokjemisk Kontaktmøte; 2018-01-18 - 2018-01-21
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29 Berge, Tone; Eriksson, Anna; Brorson, Ina Skaara; Høgestøl, Einar August; Harbo, Hanne Flinstad; Bos, Steffan Daniel; Berven, Frode.
Proteomic profiling of T cells from multiple sclerosis patients and healthy controls. American Society of Human Genetics Conference; 2018-10-16 - 2018-10-20
OSLOMET OUS UiB UiO Untitled
 
30 Eriksson, Anna; Brorson, Ina Skaara; Høgestøl, Einar August; Bos, Steffan Daniel; Harbo, Hanne Flinstad; Berven, Frode; Berge, Tone.
Proteomic profiling of CD4+ T cells from MS patients show increased activity of T cell activation pathways (compared to healthy controls). Gene expression and signalling in the immune system; 2018-04-04 - 2018-04-08
OSLOMET OUS UiB UiO Untitled
 
31 Jacobsen, Mari.
Development and Use of Mass Spectrometry Based Quantitative Proteomics Assays for Multiple Sclerosis Biomarker Candidates. : Institutt for biomedisin, Universitetet i Bergen 2018
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32 Nepstad, Ina; Hatfield, Kimberley Joanne; Aasebø, Elise; Hernandez-Valladares, Maria; Brenner, Annette; Bartaula-Brevik, Sushma; Berven, Frode; Selheim, Frode; Skavland, Jørn; Gjertsen, Bjørn Tore; Reikvam, Håkon; Bruserud, Øystein.
Two acute myeloid leukemia patient subsets are identified based on the constitutive PI3K-Akt-mTOR signaling of their leukemic cells; a functional, proteomic and transcriptomic comparison. Expert opinion on therapeutic targets 2018 ;Volum 22.(7) s. 639-653
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33 Yang, Mingxing; Kohler, Maxie; Heyder, Tina; Forsslund, Helena; Garberg, Hilde Kristin; Karimi, Reza; Grunewald, Johan; Berven, Frode; Sköld, Magnus; Wheelock, Åsa M..
Long-term smoking alters abundance of over half of the proteome in bronchoalveolar lavage cell in smokers with normal spirometry, with effects on molecular pathways associated with COPD. Respiratory Research 2018 ;Volum 19.(1)
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34 Yang, Mingxing; Kohler, Maxie; Heyder, Tina; Forsslund, Helena; Garberg, Hilde Kristin; Karimi, Reza; Grunewald, Johann; Berven, Frode; Nyrén, Sven; Sköld, Magnus; Wheelock, Åsa M..
Proteomic profiling of lung immune cells reveals dysregulation of phagocytotic pathways in female-dominated molecular COPD phenotype. Respiratory Research 2018 ;Volum 19.(39)
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2017
35 Brenner, Annette; Aasebø, Elise; Hernandez-Valladares, Maria; Selheim, Frode; Berven, Frode; Bruserud, Øystein.
Rethinking the role of osteopontin in human acute myeloid leukemia. Leukemia and Lymphoma 2017 ;Volum 58.(6) s. 1494-1497
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36 Hernandez-Valladares, Maria; Vaudel, Marc; Selheim, Frode; Berven, Frode; Bruserud, Øystein.
Proteogenomics approaches for studying cancer biology and their potential in the identification of acute myeloid leukemia biomarkers. Espert Review of Proteomics 2017 ;Volum 14.(8) s. 649-663
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37 Bjørkum, Alvhild Alette; Oveland, Eystein; Stuhr, Linda Elin Birkhaug; Havnes, Marianne Bjordal; Berven, Frode; Grønning, Marit; Hope, Arvid.
Fast hyperbaric decompression after heliox saturation altered the brain proteome in rats. PLOS ONE 2017 ;Volum 12.(10:e0185765) s. 1-16
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38 Forthun, Rakel Brendsdal; Aasebø, Elise; Rasinger, Josef Daiel; Bedringaas, Siv Lise; Berven, Frode; Selheim, Frode; Bruserud, Øystein; Gjertsen, Bjørn Tore.
Phosphoprotein DIGE profiles reflect blast differentiation, cytogenetic risk stratification, FLT3/NPM1 mutations and therapy response in acute myeloid leukaemia. Journal of Proteomics 2017 ;Volum 173. s. 32-41
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39 Kroksveen, Ann Cathrine; Guldbrandsen, Astrid; Vaudel, Marc; Lereim, Ragnhild Reehorst; Barsnes, Harald; Myhr, Kjell-Morten; Torkildsen, Øivind; Berven, Frode.
In-depth cerebrospinal fluid quantitative proteome and deglycoproteome analysis: presenting a comprehensive picture of pathways and processes affected by multiple sclerosis. Journal of Proteome Research 2017 ;Volum 16.(1) s. 179-194
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40 Nygaard, Gyrid; Herfindal, Lars; Sivertsen Åsrud, Kathrine; Bjørnstad, Ronja; Kopperud, Reidun Kristin; Oveland, Eystein; Berven, Frode; Myhren, Lene Elisabeth; Høivik, Erling Andre; Lunde, Turid Helen Felli; Bakke, Marit; Doskeland, Stein Ove; Selheim, Frode.
Epac1-deficient mice have bleeding phenotype and thrombocytes with decreased GPIbβ expression. Scientific Reports 2017 ;Volum 7:8725. s. 1-15
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41 Oveland, Eystein; Nystad, Agnes Elisabeth; Berven, Frode; Myhr, Kjell-Morten; Torkildsen, Øivind; Wergeland, Stig.
1,25-Dihydroxyvitamin-D3 induces brain proteomic changes in cuprizone mice during remyelination involving calcium proteins. Neurochemistry International 2017 ;Volum 112. s. 262-277
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42 Paunas, Theodora Ioana; Finne, Kenneth; Leh, Sabine Maria; Marti, Hans-Peter; Mollnes, Tom Eirik; Berven, Frode; Vikse, Bjørn Egil.
Glomerular abundance of complement proteins characterized by proteomic analysis of laser-captured microdissected glomeruli associates with progressive disease in IgA nephropathy. Clinical Proteomics 2017 ;Volum 14.(30)
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43 Verheggen, Kenneth; Ræder, Helge; Berven, Frode; Martens, Lennart Martens; Barsnes, Harald; Vaudel, Marc.
Anatomy and evolution of database search engines—a central component of mass spectrometry based proteomic workflows. Mass spectrometry reviews (Print) 2017 ;Volum 39.(3) s. 292-306
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44 Yadetie, Fekadu; Eide, Marta; Oveland, Eystein; Døskeland, Anne Marie Simonne; Berven, Frode; Hogstrand, Christer; Goksøyr, Anders; Karlsen, Odd Andre.
Integrative transcriptome and proteome analysis reveals perturbation of lipid metabolic pathways in the liver of Atlantic cod (Gadus morhua) treated with PCB 153. Vintermøtet i farmakologi og toksikologi 2017; 2017-01-26 - 2017-01-29
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45 Yadetie, Fekadu; Oveland, Eystein; Døskeland, Anne Marie Simonne; Berven, Frode; Goksøyr, Anders; Karlsen, Odd Andre.
Quantitative proteomics analysis reveals perturbation of lipid metabolic pathways in the liver of Atlantic cod (Gadus morhua) treated with PCB 153. Aquatic Toxicology 2017 ;Volum 185. s. 19-28
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2016
46 Aasebø, Elise; Forthun, Rakel Brendsdal; Berven, Frode; Selheim, Frode; Hernandez-Valladares, Maria.
Global cell proteome profiling, phospho-signaling and quantitative proteomics for identification of new biomarkers in acute myeloid leukemia patients. Current Pharmaceutical Biotechnology 2016 ;Volum 17.(1) s. 52-70
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47 Aasebø, Elise; Mjaavatten, Olav; Vaudel, Marc; Farag, Yehia Mohamed Mokhtar; Selheim, Frode; Berven, Frode; Bruserud, Øystein; Hernandez-Valladares, Maria.
Freezing effects on the acute myeloid leukemia cell proteome and phosphoproteome revealed using optimal quantitative workflows. Journal of Proteomics 2016 ;Volum 145. s. 214-225
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48 Hernandez-Valladares, Maria; Aasebø, Elise; Mjaavatten, Olav; Vaudel, Marc; Bruserud, Øystein; Berven, Frode; Selheim, Frode.
Reliable FASP-based procedures for optimal quantitative proteomic and phosphoproteomic analysis on samples from acute myeloid leukemia patients. Biological Procedures Online 2016 ;Volum 18:13. s. 1-10
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49 Aasebø, Elise.
Mass spectrometry-based proteome quantification in leukemic cells from acute myeloid leukemia patients. : Universitetet i Bergen 2016 (ISBN 978-82-308-3218-9)
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50 Aasebø, Elise; Berven, Frode; Selheim, Frode; Barsnes, Harald; Vaudel, Marc.
Interpretation of Quantitative Shotgun Proteomic Data. I: Proteomics in Systems Biology. Springer 2016 ISBN 978-1-4939-3339-6. s. 261-274
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