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2021
1 Mahmoud, Moqadam; Thibault, Tubiana; Emmanuel Edouard, Moutoussamy; Reuter, Nathalie.
Membrane models for molecular simulations of peripheral membrane proteins. Advances in Physics: X 2021 ;Volum 6.(1)
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2 Roberts, Mary F.; Cai, Jingfei; Natarajan, Sivanandam V; Khan, Hanif Muhammad; Reuter, Nathalie; Gershenson, Anne; Redfield, Alfred.
Phospholipids in Motion: High-Resolution 31 P NMR Field Cycling Studies. Journal of Physical Chemistry B 2021 ;Volum 125.(31) s. 8827-8838
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3 Souza, Paulo C T; [..., ..]; Khan, Hanif Muhammad; [..., ..]; Reuter, Nathalie; [.., ..]; Alex H, de Vries; Siewert Jan, Marrink.
Martini 3: a general purpose force field for coarse-grained molecular dynamics.. Nature Methods 2021 ;Volum 18. s. 382-388
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2020
4 Abboud, Angèle; Bedoucha, Pierre; Byska, Jan; Arnesen, Thomas; Reuter, Nathalie.
Dynamics-function relationship in the catalytic domains of N-terminal acetyltransferases. Computational and Structural Biotechnology Journal 2020 ;Volum 18. s. 532-547
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5 Bedoucha, Pierre; Reuter, Nathalie; Hauser, Helwig; Byska, Jan.
Visual exploration of large normal mode spaces to study protein flexibility. Computers & graphics 2020 ;Volum 90. s. 73-83
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6 Dobrovolska, Olena; Brilkov, Maxim; Madeleine, Noëlly; Ødegaard-Fougner, Øyvind; Strømland, Øyvind; Martin, Stephen R.; De Marco, Valeria; Christodoulou, Evangelos; Teigen, Knut; Isaksson, Johan; Underhaug, Jarl; Reuter, Nathalie; Aalen, Reidunn B.; Aasland, Rein; Halskau, Øyvind.
The Arabidopsis (ASHH2) CW domain binds monomethylated K4 of the histone H3 tail through conformational selection. The FEBS Journal 2020 ;Volum 287. s. 4458-4480
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7 Jouleh, Bahareh; Haaland, Ingvild; Khorsand, Fahimeh; Sandvik, Randi; Kalananthan, Tharmini; Nielsen, Rune; Jouleh, Tæraneh; Wiker, Harald Gotten; Bakke, Per S.; Reuter, Nathalie; Eagan, Tomas Mikal Lind.
Levels of proteinase 3 and neutrophil elastase in plasma, BAL and biopsies in COPD. European Respiratory Journal 2020
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8 Khan, Hanif Muhammad; Souza, Paulo C T; Thallmair, Sebastian; Barnoud, Jonathan; de Vries, Alex H; Marrink, Siewert J.; Reuter, Nathalie.
Capturing Choline–Aromatics Cation−π Interactions in the MARTINI Force Field. Journal of Chemical Theory and Computation 2020
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9 Krtenic, Bojan; Drazic, Adrian; Arnesen, Thomas; Reuter, Nathalie.
Classification and phylogeny for the annotation of novel eukaryotic GNAT acetyltransferases. PLoS Computational Biology 2020 ;Volum 16.(12) s. 1-29
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2019
10 Khan, Hanif Muhammad; MacKerell, Alexander D.; Reuter, Nathalie.
Cation‐π Interactions between Methylated Ammonium Groups and Tryptophan in the CHARMM36 Additive Force Field. Journal of Chemical Theory and Computation 2019 ;Volum 15. s. 7-12
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11 Maximova, Ksenia; Reuter, Nathalie; Trylska, Joanna.
Peptidomimetic inhibitors targeting the membrane-binding site of the neutrophil proteinase 3. Biochimica et Biophysica Acta - Biomembranes 2019 ;Volum 1861.(8) s. 1502-1509
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12 Waheed, Qaiser; Khan, Hanif Muhammad; He, Tao; Roberts, Mary F.; Gershenson, Anne; Reuter, Nathalie.
Interfacial Aromatics Mediating Cation−π Interactions with Choline-Containing Lipids Can Contribute as Much to Peripheral Protein Affinity for Membranes as Aromatics Inserted below the Phosphates. The Journal of Physical Chemistry Letters 2019 ;Volum 10.(14) s. 3972-3977
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2018
13 Abboud, Angèle.
Structure and dynamics of the N-terminal acetyltransferase family: a computational study. : University of Bergen 2018 (ISBN 978-82-308-3743-6)
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14 Fuglebakk, Edvin; Reuter, Nathalie.
A model for hydrophobic protrusions on peripheral membrane proteins. PLoS Computational Biology 2018 ;Volum 14:e1006325.(7) s. 1-26
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15 Maximova, Ksenia; Venken, Tom; Reuter, Nathalie; Trylska, Joanna.
D-peptides as inhibitors of PR3-membrane interactions. Biochimica et Biophysica Acta - Biomembranes 2018 ;Volum 1860.(2) s. 458-466
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16 Roberts, Mary F.; Khan, Hanif Muhammad; Goldstein, Rebecca; Reuter, Nathalie; Gershenson, Anne.
Search and subvert: Minimalist bacterial phosphatidylinositol-specific phospholipase C enzymes. Chemical Reviews 2018 ;Volum 118.(18) s. 8435-8473
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17 Tiwari, Sandhya Premnath; Reuter, Nathalie.
Conservation of intrinsic dynamics in proteins-what have computational models taught us?. Current Opinion in Structural Biology 2018 ;Volum 50. s. 75-81
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2017
18 Aksnes, Henriette; Goris, Marianne; Strømland, Øyvind; Drazic, Adrian; Waheed, Qaiser; Reuter, Nathalie; Arnesen, Thomas.
Molecular determinants of the N-Terminal acetyltransferase Naa60 anchoring to the Golgi membrane. Journal of Biological Chemistry 2017 ;Volum 292.(16) s. 6821-6837
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19 Venken, Tom; Schillinger, Anne-Sophie; Fuglebakk, Edvin; Reuter, Nathalie.
Interactions stabilizing the C-terminal helix of human phospholipid scramblase 1 in lipid bilayers: A computational study. Biochimica et Biophysica Acta - Biomembranes 2017 ;Volum 1859.(7) s. 1200-1210
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2016
20 Khan, Hanif Muhammad; Grauffel, Cédric; Broer, Ria; MacKerell, Alexander D.; Havenith, Remco W.A.; Reuter, Nathalie.
Improving the force field description of tyrosine-choline cation-π interactions: QM investigation of Phenol-N(Me)4 Interactions. Journal of Chemical Theory and Computation 2016 ;Volum 12.(11) s. 5585-5595
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21 Khan, Hanif Muhammad; He, Tao; Fuglebakk, Edvin; Grauffel, Cédric; Yang, Boqian; Roberts, Mary F.; Gershenson, Anne; Reuter, Nathalie.
A Role for Weak Electrostatic Interactions in Peripheral Membrane Protein Binding. Biophysical Journal 2016 ;Volum 110.(6) s. 1367-1378
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22 Khan, Hanif Muhammad.
Role of noncovalent interactions in protein peripheral membrane binding. Computational perspectives. : University of Bergen 2016 (ISBN 978-82-308-3382-7)
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23 Martin, Katherine R; Kantari-Mimoun, Chahrazade; Yin, Min; Pederzoli-Ribeil, Magali; Angelot-Delettre, Fanny; Ceroi, Adam; Grauffel, Cédric; Benhamou, Marc; Reuter, Nathalie; Saas, Philippe; Frachet, Philippe; Boulanger, Chantal M; Wikto-sarsat, Veronique.
Proteinase 3 is a phosphatidylserine-binding protein that affects the production and function of microvesicles. Journal of Biological Chemistry 2016 ;Volum 291.(20) s. 10476-10489
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24 Tiwari, Sandhya Premnath; Reuter, Nathalie.
Similarity in Shape Dictates Signature Intrinsic Dynamics Despite No Functional Conservation in TIM Barrel Enzymes. PLoS Computational Biology 2016 ;Volum 12.(3) s. -
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2015
25 Chon, Nara Lee; Osterberg, J. Ryan; Henderson, Jack; Khan, Hanif Muhammad; Reuter, Nathalie; Knight, Jefferson D.; Lin, Hai.
Membrane docking of the synaptotagmin 7 C2A domain: computation reveals interplay between electrostatic and hydrophobic contributions. Biochemistry 2015 ;Volum 54.(37) s. 5696-5711
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26 Fuglebakk, Edvin; Tiwari, Sandhya Premnath; Reuter, Nathalie.
Comparing the intrinsic dynamics of multiple protein structures using elastic network models. Biochimica et Biophysica Acta - General Subjects 2015 ;Volum 1850.(5) s. 911-922
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27 Myklebust, Line Merethe; Van Damme, Petra; Støve, Svein Isungset; Dörfel, Max J; Abboud, Angèle; Kalvik, Thomas Vikestad; Grauffel, Cédric; Jonckheere, Veronique; Wu, Yiyang; Swensen, Jeffrey; Kaasa, Hanna; Liszczak, Glen; Marmorstein, Ronen; Reuter, Nathalie; Lyon, Gholson J; Gevaert, Kris; Arnesen, Thomas.
Biochemical and cellular analysis of Ogden syndrome reveals downstream Nt-acetylation defects. Human Molecular Genetics 2015 ;Volum 24.(7) s. 1956-1976
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28 Yang, Boqian; Pu, Mingming; Khan, Hanif Muhammad; Friedman, Larry; Reuter, Nathalie; Roberts, Mary F.; Gershenson, Anne.
Quantifying transient interactions between bacillus phosphatidylinositol-specific phospholipase-C and phosphatidylcholine-rich vesicles. Journal of the American Chemical Society 2015 ;Volum 137.(1) s. 14-17
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2014
29 Budnjo, Adnan; Narawane, Shailesh; Grauffel, Cédric; Schillinger, Anne-Sophie; Fossen, Torgils; Reuter, Nathalie; Haug, Bengt Erik.
Reversible ketomethylene-based inhibitors of human neutrophil proteinase 3. Journal of Medicinal Chemistry 2014 ;Volum 57.(22) s. 9396-9408
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30 Abboud, Angele Arlette H.; Stokke, Runar; Steen, Ida Helene; Reuter, Nathalie.
Automated Enzyme Function Inference in Archaea Genomes:comparison of PRIAM and EFICAZ. socBIN Bioinformatics 2014; 2014-06-11 - 2014-06-13
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31 Budnjo, Adnan; Narawane, Shailesh; Reuter, Nathalie; Haug, Bengt Erik.
Synthesis and biological evaluation of pseudopeptide inhibitors of Proteinase 3. 29. Organisk kjemisk vintermøte; 2014-01-09 - 2014-01-12
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32 Narawane, Shailesh; Budnjo, Adnan; Grauffel, Cédric; Haug, Bengt Erik; Reuter, Nathalie.
In silico design, synthesis, and assays of specific substrates for proteinase 3: Influence of fluorogenic and charged groups. Journal of Medicinal Chemistry 2014 ;Volum 57.(3) s. 1111-1115
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33 Perica, Tina; Kondo, Yasushi; Tiwari, Sandhya Premnath; McLaughlin, Stephen H; Kemplen, Katherine R; Zhang, Xiuwei; Steward, Annette; Reuter, Nathalie; Clarke, Jane; Teichmann, Sarah A.
Evolution of oligomeric state through allosteric pathways that mimic ligand binding. Science 2014 ;Volum 346.(6216)
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34 Schillinger, Anne-Sophie; Grauffel, Cédric; Khan, Hanif Muhammad; Halskau, Øyvind; Reuter, Nathalie.
Two homologous neutrophil serine proteases bind to POPC vesicles with different affinities: When aromatic amino acids matter. Biochimica et Biophysica Acta - Biomembranes 2014 ;Volum 1838.(12) s. 3191-3202
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35 Støve, Svein Isungset; Van Damme, Petra; Myklebust, Line Merethe; Abboud, Angèle; Kalvik, Thomas Vikestad; Grauffel, Cederic; Glomnes, Nina; Kaasa, Hanna; Liszczak, Glen; Marmorstein, Ronen; Reuter, Nathalie; Lyon, Gholson J; Gevaert, Kris; Arnesen, Thomas.
In silico, in vitro and in vivo models reveal functional impairment of the Ogden syndrome N-terminal acetyltransferase Naa10 S37P mutant. PTMs in cell signalling; 2014-09-14 - 2014-09-18
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36 Taxt, Arne Michael; Diaz, Yuleima; Bacle, Amélie; Grauffel, Cédric; Reuter, Nathalie; Aasland, Rein; Sommerfelt, Halvor; Puntervoll, Pål.
Characterization of immunological cross-reactivity between enterotoxigenic Escherichia coli heat-stable toxin and human guanylin and uroguanylin. Infection and Immunity 2014 ;Volum 82.(7) s. 2913-2922
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37 Tiwari, Sandhya Premnath; Fuglebakk, Edvin; Hollup, Siv Midtun; Skjærven, Lars; Cragnolini, Tristan; Grindhaug, Svenn Helge; Tekle, Kidane M; Reuter, Nathalie.
WEBnm@ v2.0: Web server and services for comparing protein flexibility. BMC Bioinformatics 2014 ;Volum 15.(1)
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2013
38 Abboud, Angele Arlette H.; Stokke, Runar; Steen, Ida Helene; Reuter, Nathalie.
Expert system for mining and sifting novel enzyme sequences in metagenomics data. Norsk Biokjemisk Selskap Kontaktmøte; 2013-01-12 - 2013-02-03
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39 Cheng, Jiongjia; Karri, Sashank; Grauffel, Cédric; Wang, Fang; Reuter, Nathalie; Roberts, Mary F.; Wintrode, Patrick L.; Gershenson, Anne.
Does changing the predicted dynamics of a phospholipase C alter activity and membrane binding?. Biophysical Journal 2013 ;Volum 104.(1) s. 185-195
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40 De Chiara, Alessia; Pederzoli-Ribeil, Magali; Mocek, Julie; Candalh, Céline; Mayeux, Patrick; Reuter, Nathalie; Witko-Sarsat, Veronique.
Characterization of cytosolic proliferating cell nuclear antigen (PCNA) in neutrophils: anti-apoptotic role of monomeric PCNA. European Journal of Clinical Investigation 2013 ;Volum 43. s. 20-20
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41 Fuglebakk, Edvin; Reuter, Nathalie; Hinsen, Konrad.
Evaluation of protein elastic network models based on an analysis of collective motions. Journal of Chemical Theory and Computation 2013 ;Volum 9.(12) s. 5618-5628
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42 Fuglebakk, Edvin; Tiwari, Sandhya; Hollup, Siv Midtun; Skjærven, Lars; Cragnolini, Tristan; Tekle, Kidane M; Grindhaug, Svenn Helge; Reuter, Nathalie.
Comparing normal modes of protein structures using Webnm@ 2.0. Biophysical Journal 2013 ;Volum 104.(2) s. 228A-228A
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43 Grauffel, Cédric; He, Tao; Yang, Boqian; Roberts, Mary F.; Gershenson, Anne; Reuter, Nathalie.
Cation-π interactions as specific anchors for B. Thuringiensis PhosphoInositol-specific PhosphoLipase-C binding to Phosphatidylcholine bilayer. Biophysical Society Meeting 2013; 2013-02-06
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44 Grauffel, Cédric; He, Tao; Yang, Boqian; Wintrode, Patrick L.; Gershenson, Anne; Roberts, Mary F.; Reuter, Nathalie.
Cation-PI interactions as specific anchors for B. thurigiensis phosphoinositol-specific phospholipase-C binding to phosphatidylcholine bilayer. Biophysical Journal 2013 ;Volum 104.(2) s. 536A-536A
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45 Grauffel, Cédric; Yang, Boqian; He, Tao; Roberts, Mary F.; Gershenson, Anne; Reuter, Nathalie.
Cation-pi Interactions As Lipid-Specific Anchors for Phosphatidylinositol-Specific Phospholipase C. Journal of the American Chemical Society 2013 ;Volum 135.(15) s. 5740-5750
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46 Grauffel, Cédric; Yang, Boqian; He, Tao; Tubiana, Thibault; Hanif Muhammad, Khan; Fuglebakk, Edvin; Gershenson, Anne; Roberts, Mary F.; Reuter, Nathalie.
Cation-π interactions as lipid specific anchors for phosphatidylinositol-specific phospholipase-C. TheoBio 2013; 2013-06-24 - 2013-06-27
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47 He, Tao; Yang, Boqian; Grauffel, Cédric; Reuter, Nathalie; Gershenson, Anne; Roberts, Mary F..
Probing for π-Cation Interactions in the Binding of B. Thuringiensis Phosphatidylinositol-Specific Phospholipase C Phosphatidylcholine-Rich Vesicles. Biophysical Society Meeting 2013; 2013-02-05
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48 He, Tao; Yang, Boqian; Grauffel, Cédric; Reuter, Nathalie; Gershenson, Anne; Roberts, Mary F..
Probing for pi-cation interactions in the binding of B. thuringiensis phohosphatidylinositol-specific phospholipase C phosphatidylcholine-rich vesicles. Biophysical Journal 2013 ;Volum 104.(2) s. 363A-364A
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49 Parulek, Julius; Turkay, Cagatay; Reuter, Nathalie; Viola, Ivan.
Visual cavity analysis in molecular simulations. BMC Bioinformatics 2013 ;Volum 14. Suppl. 19
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50 Romanowska, Julia; Reuter, Nathalie; Trylska, Joanna.
Comparing aminoglycoside binding sites in bacterial ribosomal RNA and aminoglycoside modifying enzymes. Proteins: Structure, Function, and Bioinformatics 2013 ;Volum 81.(1) s. 63-80
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