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2021
1 Andersen, Maria Karoline; Høiem, Therese Stork; Claes, Britt S.R.; Balluff, Benjamin; Marta, Martin-Lorenzo; Richardsen, Elin; Krossa, Sebastian; Bertilsson, Helena; Heeren, Ron M.A.; Rye, Morten Beck; Giskeødegård, Guro F.; Bathen, Tone Frost; Tessem, May-Britt.
Spatial differentiation of metabolism in prostate cancer tissue by MALDI-TOF MSI. Cancer & Metabolism 2021 s. -
UiT NTNU STO UNN Untitled
 
2 Vandsemb, Esten; Rye, Morten Beck; Steiro, Ida Johnsen; Elsaadi, Samah; Rø, Torstein Baade; Slørdahl, Tobias Schmidt; Sponaas, Anne-Marit; Børset, Magne; Abdollahi, Pegah.
PRL-3 induces a positive signaling circuit between glycolysis and activation of STAT1/2. The FEBS Journal 2021 s. 1-16
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2020
3 Jalili, Mahsa; Gerdol, Marco; Greco, S.; Pallavicini, Alberto; Buonocore, Francesco; Scapigliati, Giuseppe; Picchietti, Simona; Esteban, Maria Angeles; Rye, Morten Beck; Bones, Atle M..
Differential Effects of Dietary Supplementation of Krill Meal, Soybean Meal, Butyrate, and Bactocell® on the Gene Expression of Atlantic Salmon Head Kidney. International Journal of Molecular Sciences 2020 ;Volum 21.(3) s. 886-
NTNU Untitled
 
4 Rauluseviciute, Ieva; Drabløs, Finn; Rye, Morten Beck.
DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation. BMC Medical Genomics 2020 ;Volum 13.(1) s. 6-
NTNU STO Untitled
 
5 Rise, Kjersti; Tessem, May-Britt; Drabløs, Finn; Rye, Morten Beck.
How FunHoP changed the picture. MCC International Webinar Series; 2020-10-10
NTNU Untitled
 
6 Rye, Morten Beck; Bertilsson, Helena; Krossa, Sebastian; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt.
A gene signature for citrate and spermine (CS) secretion in the prostate. Swedish Symposium on Prostate Cancer Research; 2020-02-03 - 2020-02-04
NTNU Untitled
 
7 Zwiggelaar, Rosalie; Lindholm, Håvard Takle; Fosslie, Madeleine Lystad; Pedersen, Marianne Terndrup; Ohta, Yuki; Sanchez, Alberto Diez; Martin Alonso, Mara; Ostrop, Jenny; Matano, Mami; Parmar, Naveen; Kvaløy, Emilie; Spanjers, Roos; Nazmi, Kamran; Rye, Morten Beck; Drabløs, Finn; Arrowsmith, Cheryl H; Dahl, John Arne; Jensen, Kim B.; Sato, Toshiro; Oudhoff, Menno.
LSD1 represses a neonatal/reparative gene program in adult intestinal epithelium. Science Advances 2020 ;Volum 6.(37) s. -
NTNU OUS STO Untitled
 
2019
8 Andersen, Maria Karoline; Høiem, Therese Stork; Balluff, Benjamin; Claes, Britt S.R.; Martin-Lorenzo, Marta; Richardsen, Elin; Bertilsson, Helena; Heeren, Ron M.A.; Rye, Morten Beck; Giskeødegård, Guro F.; Bathen, Tone Frost; Tessem, May-Britt.
Altered metabolism in prostate cancer and stroma detected through MALDI-TOF MSI. Metabolomics 2019; 2019-06-23 - 2019-06-27
NTNU UiT Untitled
 
9 Grinde, Maria Tunset; Hilmarsdòttir, Bylgja; Tunset, Hanna Maja; Henriksen, Ida Marie; Kim, Jana; Haugen, Mads Haugland; Rye, Morten Beck; Mælandsmo, Gunhild Mari; Moestue, Siver Andreas.
Glutamine to proline conversion is associated with response to glutaminase inhibition in breast cancer. Breast Cancer Research 2019 ;Volum 21.(1) s. 1-13
NORD NTNU OUS STO UiO UiT Untitled
 
10 Jalili, Mahsa; Gerdol, Marco; Greco, Samuele; Pallavicini, Alberto; Buonocore, Francesco; Scapigliati, Giuseppe; Picchietti, Simona; Esteban, Maria Angeles; Rye, Morten Beck; Bones, Atle M..
Altered transcription levels of immune markers in head kidney of Atlantic salmon after different feedings. Scandinavian Society of Immunology conference; 2019-12-01
NTNU Untitled
 
11 Reuluseviciute, Ieva; Drabløs, Finn; Rye, Morten Beck.
DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis. Clinical Epigenetics 2019 ;Volum 11:193. s. 1-13
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12 Rye, Morten Beck; Bertilsson, Helena; Krossa, Sebastian; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt.
The genes controlling citrate and spermine secretion in prostate cancer. Norwegian Biochemical Society 55th Contact Meeting; 2019-01-24 - 2019-01-27
NTNU Untitled
 
13 Rye, Morten Beck; Nygård, Ståle; Drabløs, Finn; Petersen, Kjell; Våge, Dag Inge; Willassen, Nils Peder; Hovig, Eivind; Jonassen, Inge.
ELIXIR.NO - The national infrastructure of bioinformatics. Norwegian Biochemical Society 55th Contact Meeting; 2019-01-24 - 2019-01-27
NTNU OUS NMBU UiB UiO UiT Untitled
 
14 Rye, Morten Beck; Tessem, May-Britt; Krossa, Sebastian; Bathen, Tone Frost; Drabløs, Finn; Bertilsson, Helena.
The expression of genes controlling citrate and spermine secretion is lost in aggressive prostate cancer and metastasis. The 32nd NUF Congress; 2019-08-05 - 2019-08-08
NTNU Untitled
 
15 Vardaxis, Ioannis; Drabløs, Finn; Rye, Morten Beck; Lindqvist, Bo Henry.
MACPET: model-based analysis for ChIA-PET. Biostatistics 2019
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2018
16 Andersen, Maria Karoline; Høiem, Therese Stork; Balluff, Benjamin; Martin-Lorenzo, Marta; Richardsen, Elin; Bertilsson, Helena; Heeren, Ron M.A.; Rye, Morten Beck; Giskeødegård, Guro F.; Bathen, Tone Frost; Tessem, May-Britt.
Altered metabolism in prostate cancer and stroma detected through MALDI-TOF MSI. IMSS II & OurCon VI Joint Meeting; 2018-11-11 - 2018-11-14
NTNU UiT Untitled
 
17 Andersen, Maria Karoline; Rise, Kjersti; Giskeødegård, Guro F.; Richardsen, Elin; Bertilsson, Helena; Størkersen, Øystein; Bathen, Tone Frost; Rye, Morten Beck; Tessem, May-Britt.
Integrative metabolic and transcriptomic profiling of prostate cancer tissue containing reactive stroma. ISMRM Workshop on Advances in Multiscale Cancer Detection: From Micro to Macro; 2018-10-07 - 2018-10-10
NTNU STO UiT Untitled
 
18 Andersen, Maria Karoline; Rise, Kjersti; Giskeødegård, Guro F.; Richardsen, Elin; Bertilsson, Helena; Størkersen, Øystein; Bathen, Tone Frost; Rye, Morten Beck; Tessem, May-Britt.
Integrative metabolic and transcriptomic profiling of prostate cancer tissue containing reactive stroma. Scientific Reports 2018 ;Volum 8:14269. s. 1-11
NTNU STO UiT UNN Untitled
 
19 Rise, Kjersti; Drabløs, Finn; Rye, Morten Beck.
Cell Lines vs. Tissue - A Comparative Study of Gene Expression Using FunHoP. International Conference on Systems Biology; 2018-10-28 - 2018-11-01
NTNU Untitled
 
20 Rise, Kjersti; Drabløs, Finn; Rye, Morten Beck.
FunHoP – Enhanced visualisation and analysis of functionally homologous proteins in complex metabolic networks. International Study Group for Systems Biology; 2018-09-24 - 2018-09-28
NTNU Untitled
 
21 Rye, Morten Beck.
When Prostate Cancer Becomes Dangerous!. Health Innovation Seminar; 2018-03-21 - 2018-03-21
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22 Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt.
Cholesterol synthesis pathway genes in prostate cancer are transcriptionally downregulated when tissue confounding is minimized. BMC Cancer 2018 ;Volum 18.(478) s. -
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23 Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt.
Computational minimization of stroma tissue confounding reveals systematic downregulation of cholesterol synthesis pathway genes in prostate cancer. ECCB 2018 - 17th European Conference on Computational Biology; 2018-09-08 - 2918-09-12
NTNU Untitled
 
24 Søgaard, Caroline Danielsen; Moestue, Siver Andreas; Rye, Morten Beck; Kim, Jana; Nepal, Anala; Liabakk, Nina-Beate; Bachke, Siri; Bathen, Tone Frost; Otterlei, Marit; Hill, Deborah Katherine.
APIM-peptide targeting PCNA improves the efficacy of docetaxel treatment in the TRAMP mouse model of prostate cancer. OncoTarget 2018 ;Volum 9.(14) s. 11752-11766
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25 Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš; Rye, Morten Beck; Hjerde, Erik; Antony Samy, Jeevan Karloss; Fornous, Ghislain; Azab, Abdulrahman; Våge, Dag Inge; Hovig, Eivind; Willassen, Nils Peder; Drabløs, Finn; Nygård, Ståle; Petersen, Kjell; Jonassen, Inge.
Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research 2018 ;Volum 7:968. s. -
NTNU UiB UiO UiT NMBU Untitled
 
2017
26 Rise, Kjersti; Drabløs, Finn; Rye, Morten Beck.
Aggregating RNA-Seq reads from multiple genes in KEGG metabolic pathways improves interpretability in gene expression pathway analysis. International Conference on Systems Biology; 2017-08-06 - 2017-08-12
NTNU Untitled
 
27 Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt.
Computational assessment of tissue heterogeneity in patient tissue samples reveals that cholesterol synthesis pathway genes in prostate cancer are consistently downregulated.. BC2 Computational Biology Conference; 2017-09-12 - 2017-09-15
NTNU Untitled
 
28 Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt.
Transcriptional downregulation of cholesterol synthesis pathway genes in prostate cancer. The 53rd Contact Meeting; 2017-01-19
NTNU Untitled
 
29 Rye, Morten Beck; Tessem, May-Britt; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Bertilsson, Helena.
Cholesterol synthesis pathway genes in prostate cancer are downregulated.. 31st NUF Congress; 2017-06-14 - 2017-06-16
NTNU Untitled
 
30 Sandsmark, Elise; Andersen, Maria Karoline; Bofin, Anna M.; Bertilsson, Helena; Drabløs, Finn; Bathen, Tone Frost; Rye, Morten Beck; Tessem, May-Britt.
SFRP4 gene expression is increased in aggressive prostate cancer. Scientific Reports 2017 ;Volum 7. s. 1-10
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2016
31 Hansen, Ailin Falkmo; Sandsmark, Elise; Rye, Morten Beck; Wright, Alan J; Bertilsson, Helena; Richardsen, Elin; Viset, Trond; Bofin, Anna M.; Angelsen, Anders; Selnæs, Kirsten Margrete; Bathen, Tone Frost; Tessem, May-Britt.
Presence of TMPRSS2-ERG is associated with alterations of the metabolic profile in human prostate cancer. OncoTarget 2016
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32 Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn Sverre; Tessem, May-Britt.
Transcriptional downregulation of cholesterol synthesis revealed as a hallmark for prostate cancer after adjustment for confounding stroma. ESUR16 - 23rd Meeting of the EAU Section of Urological Research; 2016-10-20 - 2016-10-22
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33 Sandsmark, Elise; Hansen, Ailin Falkmo; Bertilsson, Helena; Selnæs, Kirsten Margrete; Wright, Alan; Bofin, Anna M.; Bathen, Tone Frost; Tessem, May-Britt; Rye, Morten Beck.
Non-canonicle Wnt5a signalling is associated with EMT and metabolic alterations in human prostate cancer. Current and Future Clinical Biomarkers of Cancer; 2016-06-16 - 2016-06-17
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34 Sandsmark, Elise; Hansen, Ailin Falkmo; Selnæs, Kirsten Margrete; Bertilsson, Helena; Bofin, Anna M.; Wright, Alan J.; Viset, Trond; Richardsen, Elin; Drabløs, Finn Sverre; Bathen, Tone Frost; Tessem, May-Britt; Rye, Morten Beck.
A novel non-canonical Wnt signature for prostate cancer aggressiveness. OncoTarget 2016 ;Volum 8.(6) s. 9572-9586
NTNU STO UiT UNN Untitled
 
35 Sandsmark, Elise; Hansen, Ailin Falkmo; Selnæs, Kirsten Margrete; Bertilsson, Helena; Bofin, Anna M.; Wright, Alan J; Viset, Trond; Richardsen, Elin; Drabløs, Finn Sverre; Bathen, Tone Frost; Tessem, May-Britt; Rye, Morten Beck.
A novel non-canonical wnt signature associated with Gleason score, recurrence, metastases and metabolic alterations in prostate cancer. The 8th National PhD Conference in Medical Imaging; 2016-11-21 - 2016-11-22
NTNU STO UiO UiT Untitled
 
36 Tessem, May-Britt; Bertilsson, Helena; Angelsen, Anders; Bathen, Tone Frost; Drabløs, Finn Sverre; Rye, Morten Beck.
A balanced tissue composition reveals new metabolic and gene expression markers in prostate cancer. PLOS ONE 2016 ;Volum 11.(4)
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37 Vandsemb, Esten Nymoen; Bertilsson, Helena; Abdollahi, Pegah; Størkersen, Øystein; Våtsveen, Thea Kristin; Rye, Morten Beck; Rø, Torstein Baade; Børset, Magne; Slørdahl, Tobias Schmidt.
Phosphatase of regenerating liver 3 (PRL-3) is overexpressed in human prostate cancer tissue and promotes growth and migration.. Journal of Translational Medicine 2016 ;Volum 14.(71) s. -
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2015
38 Rydbeck, Halfdan; Sandve, Geir Kjetil F.; Ferkingstad, Egil; Simovski, Boris; Rye, Morten Beck; Hovig, Johannes Eivind.
ClusTrack: Feature extraction and similarity measures for clustering of genome-wide data sets. PLOS ONE 2015 ;Volum 10.(4) s. -
NR NTNU OUS UiO Untitled
 
39 Hansen, Ailin Falkmo; Sandsmark, Elise; Rye, Morten Beck; Wright, Alan; Bertilsson, Helena; Bofin, Anna M.; Angelsen, Anders; Selnæs, Kirsten Margrete; Bathen, Tone Frost; Tessem, May-Britt.
TMPRSS2:ERG gene fusion and ERG overexpression in human prostate cancer are associated with changed metabolism. ISMRM 2015; 2015-05-30 - 2015-07-05
NTNU Untitled
 
40 Hansen, Ailin Falkmo; Sandsmark, Elise; Rye, Morten Beck; Wright, Alan; Bertilsson, Helena; Sjøbakk, Torill Eidhammer; Bofin, Anna M.; Angelsen, Anders; Selnæs, Kirsten Margrete; Bathen, Tone Frost; Tessem, May-Britt.
TMPRSS2:ERG gene fusion in human prostate cancer is associated with altered metabolism. NBS contact meeting Svalbard; 2015-02-09 - 2015-02-13
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41 Hurst, Laurence D.; Ghanbarian, Avazeh T.; Forrest, Alistair R.R.; Huminiecki, Lukasz; Haberle, Vanja; Drabløs, Finn Sverre; Rye, Morten Beck.
The constrained maximal expression level owing to haploidy shapes gene content on the mammalian X chromosome. PLoS Biology 2015 ;Volum 13:e1002315.(12) s. 1-48
Untitled
 
42 Sandsmark, Elise; Hansen, Ailin Falkmo; Bertilsson, Helena; Selnæs, Kirsten Margrete; Wright, Alan J; Axcrona, K; Bofin, Anna M.; Bathen, Tone Frost; Rye, Morten Beck; Tessem, May-Britt.
Non-canonical Wnt5a signalling is associated with EMT and metabolic alterations in human prostate cancer. ESMRMB 2015 Congress; 2015-10-01 - 2015-10-03
NTNU Untitled
 
43 Sandsmark, Elise; Hansen, Ailin Falkmo; Rye, Morten Beck; Wright, Alan; Bertilsson, Helena; Sjøbakk, Torill Eidhammer; Bofin, Anna M.; Angelsen, Anders; Selnæs, Kirsten Margrete; Bathen, Tone Frost; Tessem, May-Britt.
TMPRSS2:ERG gene fusion in human prostate cancer shows decreased levels of citrate and spermine. Regional forskningskonferanse i Helse Midt-Norge; 2015-06-09 - 2015-06-10
NTNU Untitled
 
44 Sandsmark, Elise; Selnæs, Kirsten Margrete; Bertilsson, Helena; Bofin, Anna M.; Wright, Alan; Viset, Trond; Richardsen, Elin; Drabløs, Finn; Bathen, Tone Frost; Tessem, May-Britt; Rye, Morten Beck.
Non-canonical Wnt5a-Fizzled2 signaling is associated with metabolic reprogramming and biochemical recurrence in human prostate cancer. ESUR-SBUR15 - The 11th World Congress on Urological Research; 2015-09-10 - 2015-09-12
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2014
45 Forest, Alistair R.R.; Kawaji, Hideya; Rehli, Michael; Baillie, John Kenneth; de Hoon, Michiel; Haberle, Vanja; Lassmann, Timo; Kulakovskiy, Ivan; Lizio, Marina; Itoh, Masayoshi; Andersson, Robin; Mungall, Christopher; Meehan, Terrence; Schmeier, Sebastian; Bertin, Nicolas; Jørgensen, Mette Kristine; Dimont, Emmanuel; Arner, Erik; Schmidl, Christian; Schaefer, Ulf; Medvedeva, Yulia; Plessy, Charles; Vitezic, Morana; Severin, Jessica; Semple, Colin; Ishizu, Yuri; Young, Robert; Francescatto, Margherita; Altschuler, Intikhab Alam; Albanese, Davide; Altschule, Gabriel M.; Arakawa, Takahiro; Archer, John; Arner, Peter; Babina, Magda; Rennie, Sarah; Balwierz, Piotr J.; Beckhouse, Anthony G.; Pradhan-Bhatt, Swati; Blake, Judith; Blumenthal, Antje; Bodega, Beatrice; Bonetti, Alessandro; Briggs, James A.; Brombacher, Frank; Burroughs, Alexander Maxwell; Califano, Andrea C.; Lenhard, Boris; Rye, Morten Beck; Drabløs, Finn; Consortium, FANTOM.
A promoter-level mammalian expression atlas. Nature 2014 ;Volum 507.(7493) s. 462-470
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46 Rye, Morten Beck; Bertilsson, Helena; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt.
Simplifying methods for adjusting tissue heterogeneity pinpoint genes responsible for altered metabolism in prostate cancer samples. ESUR 2014; 2014-10-09 - 2014-10-11
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47 Rye, Morten Beck; Bertilsson, Helena; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt.
Tissue heterogeneity and data integration in prostate cancer. Bioinformatics Network Seminar: Biological networks – from genes to populations; 2014-12-08 - 2014-12-08
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48 Rye, Morten Beck; Bertilsson, Helena; Drabløs, Finn; Angelsen, Anders; Bathen, Tone Frost; Tessem, May-Britt.
Gene signatures ESC, MYC and ERG-fusion are early markers of a potentially dangerous subtype of prostate cancer. BMC Medical Genomics 2014 ;Volum 7.(50)
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49 Rye, Morten Beck; Bertilsson, Helena; Drabløs, Finn; Angelsen, Anders; Bathen, Tone Frost; Tessem, May-Britt.
Subtype classification of prostate cancer. Onsdagsmøte, IKM; 2014-01-15 - 2014-01-15
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50 Rye, Morten Beck; Sandve, Geir Kjetil F.; Daub, Carsten O; Kawaji, H; Carninci, P; Forrest, A; Drabløs, Finn.
Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines. BMC Genomics 2014 ;Volum 15.(1)
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