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2020
1 Bösl, Korbinian; Ghavidel, Fatemeh; Tekle, Kidane M; Kleppe, Rune; Hjerde, Erik; Drabløs, Finn; Hovig, Eivind; Våge, Dag Inge; Willassen, Nils Peder; Petersen, Kjell; Jonassen, Inge.
End-to-End Data Management Toolkit for Norwegian Life Scientists. 56th Contact Meeting of the Norwegian Biochemical Society; 2020-01-23 - 2020-01-26
NTNU UiB UiO UiT NMBU Untitled
 
2 Ehsani, Rezvan; Drabløs, Finn.
Enhanced identification of significant regulators of gene expression. BMC Bioinformatics 2020 ;Volum 21. s. 134-
NTNU Untitled
 
3 Ehsani, Rezvan; Drabløs, Finn.
Robust Distance Measures for kNN Classification of Cancer Data. Cancer Informatics 2020 ;Volum 19. s. 1-9
NTNU Untitled
 
4 Rauluseviciute, Ieva; Drabløs, Finn; Rye, Morten Beck.
DNA hypermethylation associated with upregulated gene expression in prostate cancer demonstrates the diversity of epigenetic regulation. BMC Medical Genomics 2020 ;Volum 13.(1) s. 6-
NTNU STO Untitled
 
5 Rise, Kjersti; Tessem, May-Britt; Drabløs, Finn; Rye, Morten Beck.
How FunHoP changed the picture. MCC International Webinar Series; 2020-10-10
NTNU Untitled
 
6 Rye, Morten Beck; Bertilsson, Helena; Krossa, Sebastian; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt.
A gene signature for citrate and spermine (CS) secretion in the prostate. Swedish Symposium on Prostate Cancer Research; 2020-02-03 - 2020-02-04
NTNU Untitled
 
7 Singh, Ashish Kumar; Talseth-Palmer, Bente Anita; McPhillips, Mary; Lavik, Liss Ane; Xavier, Alexandre; Drabløs, Finn; Sjursen, Wenche.
Targeted sequencing of genes associated with the mismatch repair pathway in patients with endometrial cancer. PLOS ONE 2020 s. 1-19
HMR NTNU STO Untitled
 
8 Zwiggelaar, Rosalie; Lindholm, Håvard Takle; Fosslie, Madeleine Lystad; Pedersen, Marianne Terndrup; Ohta, Yuki; Sanchez, Alberto Diez; Martin Alonso, Mara; Ostrop, Jenny; Matano, Mami; Parmar, Naveen; Kvaløy, Emilie; Spanjers, Roos; Nazmi, Kamran; Rye, Morten Beck; Drabløs, Finn; Arrowsmith, Cheryl H; Dahl, John Arne; Jensen, Kim B.; Sato, Toshiro; Oudhoff, Menno.
LSD1 represses a neonatal/reparative gene program in adult intestinal epithelium. Science Advances 2020 ;Volum 6.(37) s. -
NTNU OUS STO Untitled
 
2019
9 Reuluseviciute, Ieva; Drabløs, Finn; Rye, Morten Beck.
DNA methylation data by sequencing: experimental approaches and recommendations for tools and pipelines for data analysis. Clinical Epigenetics 2019 ;Volum 11:193. s. 1-13
NTNU STO Untitled
 
10 Rye, Morten Beck; Bertilsson, Helena; Krossa, Sebastian; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt.
The genes controlling citrate and spermine secretion in prostate cancer. Norwegian Biochemical Society 55th Contact Meeting; 2019-01-24 - 2019-01-27
NTNU Untitled
 
11 Rye, Morten Beck; Nygård, Ståle; Drabløs, Finn; Petersen, Kjell; Våge, Dag Inge; Willassen, Nils Peder; Hovig, Eivind; Jonassen, Inge.
ELIXIR.NO - The national infrastructure of bioinformatics. Norwegian Biochemical Society 55th Contact Meeting; 2019-01-24 - 2019-01-27
NTNU OUS NMBU UiB UiO UiT Untitled
 
12 Rye, Morten Beck; Tessem, May-Britt; Krossa, Sebastian; Bathen, Tone Frost; Drabløs, Finn; Bertilsson, Helena.
The expression of genes controlling citrate and spermine secretion is lost in aggressive prostate cancer and metastasis. The 32nd NUF Congress; 2019-08-05 - 2019-08-08
NTNU Untitled
 
13 Vardaxis, Ioannis; Drabløs, Finn; Rye, Morten Beck; Lindqvist, Bo Henry.
MACPET: model-based analysis for ChIA-PET. Biostatistics 2019
NTNU STO Untitled
 
2018
14 Ehsani, Rezvan; Drabløs, Finn.
Measures of co-expression for improved function prediction of long non-coding RNAs. BMC Bioinformatics 2018 ;Volum 19.(1) s. 533-
NTNU Untitled
 
15 Krokan, Hans Einar; Kavli, Bodil Merete; Slupphaug, Geir; Drabløs, Finn.
The Earth, Life and Genomic Uracil. I: Genomic Uracil - Evolution, Biology, Immunology and Disease. World Scientific 2018 ISBN 978-981-3233-49-2. s. 15-45
NTNU STO Untitled
 
16 Olaisen, Camilla; Kvitvang, Hans Fredrik Nyvold; Lee, Sungmin; Almaas, Eivind; Bruheim, Per; Drabløs, Finn; Otterlei, Marit.
The role of PCNA as a scaffold protein in cellular signaling is functionally conserved between yeast and humans. FEBS Open Bio 2018 ;Volum 8.(7) s. 1135-1145
NTNU Untitled
 
17 Ribicic, Deni; Netzer, Roman; Hazen, Terry C.; Techtmann, Stephen M.; Drabløs, Finn; Brakstad, Odd Gunnar.
Microbial community and metagenome dynamics during biodegradation of dispersed oil reveals potential key-players in cold Norwegian seawater. Marine Pollution Bulletin 2018 ;Volum 129.(1) s. 370-378
OCEAN NTNU Untitled
 
18 Rise, Kjersti; Drabløs, Finn; Rye, Morten Beck.
Cell Lines vs. Tissue - A Comparative Study of Gene Expression Using FunHoP. International Conference on Systems Biology; 2018-10-28 - 2018-11-01
NTNU Untitled
 
19 Rise, Kjersti; Drabløs, Finn; Rye, Morten Beck.
FunHoP – Enhanced visualisation and analysis of functionally homologous proteins in complex metabolic networks. International Study Group for Systems Biology; 2018-09-24 - 2018-09-28
NTNU Untitled
 
20 Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt.
Cholesterol synthesis pathway genes in prostate cancer are transcriptionally downregulated when tissue confounding is minimized. BMC Cancer 2018 ;Volum 18.(478) s. -
NTNU STO Untitled
 
21 Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt.
Computational minimization of stroma tissue confounding reveals systematic downregulation of cholesterol synthesis pathway genes in prostate cancer. ECCB 2018 - 17th European Conference on Computational Biology; 2018-09-08 - 2918-09-12
NTNU Untitled
 
22 Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš; Rye, Morten Beck; Hjerde, Erik; Antony Samy, Jeevan Karloss; Fornous, Ghislain; Azab, Abdulrahman; Våge, Dag Inge; Hovig, Eivind; Willassen, Nils Peder; Drabløs, Finn; Nygård, Ståle; Petersen, Kjell; Jonassen, Inge.
Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research 2018 ;Volum 7:968. s. -
NTNU UiB UiO UiT NMBU Untitled
 
23 Ås, Christina Gabrielsen; Drabløs, Finn; Haugum, Kjersti; Afset, Jan Egil.
Comparative Transcriptome Profiling Reveals a Potential Role of Type VI Secretion System and Fimbriae in Virulence of Non-O157 Shiga Toxin-Producing Escherichia coli. Frontiers in Microbiology 2018 ;Volum 9. s. -
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2017
24 Lizio, Marina; Harshbarger, Jayson; Abugessaisa, Imad; Noguchi, Shuei; Kondo, Atsushi; Severin, Jessica; Mungall, Chris; Arenillas, David; Mathelier, Anthony; Medvedeva, Yulia; Lennartsson, Andreas; Drabløs, Finn Sverre; Ramilowski, Jordan; Rackham, Owen; Gough, Julian; Andersson, Robin; Sandelin, Albin; Ienasescu, Hans; Ono, Hiromasa; Bono, Hidemasa; Hayashizaki, Yoshihide; Carninci, Piero; Forrest, Alistair R.R.; Kasukawa, Takeya; Kawaji, Hideya.
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. Nucleic Acids Research 2017 ;Volum 45.(D1) s. D737-D743
NTNU OUS UiO Untitled
 
25 Drabløs, Finn.
Standardized meta-data for genomic tracks. ELIXIR All Hands 2017; 2017-03-21 - 2017-03-23
NTNU Untitled
 
26 Drabløs, Finn; Nygård, Ståle; Petersen, Kjell; Våge, Dag Inge; Willassen, Nils Peder; Hovig, Eivind; Jonassen, Inge.
ELIXIR.NO - The national infrastructure for bioinformatics. NBS Contact Meeting; 2017-01-19 - 2017-01-22
NTNU UiB UiO UiT NMBU Untitled
 
27 Drabløs, Finn Sverre; Ehsani, Rezvan.
Improved strategy for function prediction of lncRNAs. FANTOM6 Natsu Meeting; 2017-08-31 - 2017-09-01
NTNU Untitled
 
28 Hansen, Maren; Johansen, Jostein; Sylvander, Anna Elisabeth; Bjørnevoll, Inga; Talseth-Palmer, Bente Anita; Lavik, Liss Ane; Xavier, Alexandre; Engebretsen, Lars Fredri; Scott, Rodney; Drabløs, Finn Sverre; Sjursen, Wenche.
Use of multigene-panel identifies pathogenic variants in several CRC-predisposing genes in patients previously tested for Lynch Syndrome. Clinical Genetics 2017 ;Volum 92.(4) s. 405-414
HMR NTNU STO Untitled
 
29 Rise, Kjersti; Drabløs, Finn; Rye, Morten Beck.
Aggregating RNA-Seq reads from multiple genes in KEGG metabolic pathways improves interpretability in gene expression pathway analysis. International Conference on Systems Biology; 2017-08-06 - 2017-08-12
NTNU Untitled
 
30 Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt.
Computational assessment of tissue heterogeneity in patient tissue samples reveals that cholesterol synthesis pathway genes in prostate cancer are consistently downregulated.. BC2 Computational Biology Conference; 2017-09-12 - 2017-09-15
NTNU Untitled
 
31 Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Tessem, May-Britt.
Transcriptional downregulation of cholesterol synthesis pathway genes in prostate cancer. The 53rd Contact Meeting; 2017-01-19
NTNU Untitled
 
32 Rye, Morten Beck; Tessem, May-Britt; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn; Bertilsson, Helena.
Cholesterol synthesis pathway genes in prostate cancer are downregulated.. 31st NUF Congress; 2017-06-14 - 2017-06-16
NTNU Untitled
 
33 Sandsmark, Elise; Andersen, Maria Karoline; Bofin, Anna M.; Bertilsson, Helena; Drabløs, Finn; Bathen, Tone Frost; Rye, Morten Beck; Tessem, May-Britt.
SFRP4 gene expression is increased in aggressive prostate cancer. Scientific Reports 2017 ;Volum 7. s. 1-10
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34 Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman; Holden, Lars; Holden, Marit; Grytten, Ivar; Rand, Knut Dagestad; Drabløs, Finn; Johansen, Morten; Mora Ortiz, Antonio Carlos; Lund-Andersen, Christin; Fromm, Bastian; Eskeland, Ragnhild; Gabrielsen, Odd Stokke; Ferkingstad, Egil; Nakken, Sigve; Bengtsen, Mads; Nederbragt, Alexander Johan; Thorarensen, Hildur Sif; Akse, Johannes Andreas; Glad, Ingrid Kristine; Hovig, Johannes Eivind; Sandve, Geir Kjetil.
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. GigaScience 2017 ;Volum 6.(7) Suppl. https://academic.oup s. 1-12
NR NTNU OUS UiO Untitled
 
2016
35 Bahrami, Shahram; Drabløs, Finn Sverre.
Gene regulation in the immediate-early response process. Advances in Biological Regulation 2016 ;Volum 62. s. 37-49
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36 Bahrami, Shahram; Drabløs, Finn Sverre.
Identification and analysis of genes in immediate-early response processes. NBS Contact Meeting; 2016-01-21 - 2016-01-24
NTNU Untitled
 
37 Drabløs, Finn Sverre.
How to prepare genes for rapid activation. SocBiN Bioinformatics 2016; 2016-06-14 - 2016-06-16
NTNU Untitled
 
38 Ehsani, Rezvan; Bahrami, Shahram; Drabløs, Finn Sverre.
Feature-based classification of human transcription factors into hypothetical sub-classes related to regulatory function.. BMC Bioinformatics 2016 ;Volum 17.(459) s. -
NTNU STO Untitled
 
39 Ehsani, Rezvan; Drabløs, Finn Sverre.
TopoICSim: A new semantic similarity measure based on gene ontology. BMC Bioinformatics 2016 ;Volum 17.(1)
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40 Krokan, Hans Einar; Pettersen, Henrik Sahlin; Mjelle, Robin; Hegre, Siv Anita; Sætrom, Pål; Drabløs, Finn Sverre; Sarno, Antonio; Galashevskaya, Anastasia; Aas, Per Arne; Liabakk, Nina-Beate; Doseth, Berit; Slupphaug, Geir; Kavli, Bodil Merete.
REGULATION OF BASE EXCISION REPAIR – CANONICAL AND NON-CANONICAL PROCESSING OF GENOMIC URACIL. 10th International Multiconference on Bioinformatics of Genome Regulation and Structure\Systems Biology; 2016-08-29 - 2016-09-03
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41 Langkilde, Ane; Olsen, Lene Christin; Sætrom, Pål; Drabløs, Finn Sverre; Besenbacher, Søren; Raaby, Line; Johansen, Claus; Iversen, Lars.
Pathway Analysis of Skin from Psoriasis Patients after Adalimumab Treatment Reveals New Early Events in the Anti-Inflammatory Mechanism of Anti-TNF-α. PLOS ONE 2016 ;Volum 11.(12) s. -
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42 Lewin, Anna; Strand, Trine Aakvik; Haugen, Tone; Klinkenberg, Geir; Kotlar, Hans Kristian; Valla, Svein; Drabløs, Finn Sverre; Wentzel, Alexander.
Discovery and Characterization of a Thermostable Esterase from an Oil Reservoir Metagenome. Advances in Enzyme Research 2016 ;Volum 4.(2) s. 68-86
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43 Rye, Morten Beck; Bertilsson, Helena; Andersen, Maria Karoline; Rise, Kjersti; Bathen, Tone Frost; Drabløs, Finn Sverre; Tessem, May-Britt.
Transcriptional downregulation of cholesterol synthesis revealed as a hallmark for prostate cancer after adjustment for confounding stroma. ESUR16 - 23rd Meeting of the EAU Section of Urological Research; 2016-10-20 - 2016-10-22
NTNU UiO Untitled
 
44 Sandsmark, Elise; Hansen, Ailin Falkmo; Selnæs, Kirsten Margrete; Bertilsson, Helena; Bofin, Anna M.; Wright, Alan J.; Viset, Trond; Richardsen, Elin; Drabløs, Finn Sverre; Bathen, Tone Frost; Tessem, May-Britt; Rye, Morten Beck.
A novel non-canonical Wnt signature for prostate cancer aggressiveness. OncoTarget 2016 ;Volum 8.(6) s. 9572-9586
NTNU STO UiT UNN Untitled
 
45 Sandsmark, Elise; Hansen, Ailin Falkmo; Selnæs, Kirsten Margrete; Bertilsson, Helena; Bofin, Anna M.; Wright, Alan J; Viset, Trond; Richardsen, Elin; Drabløs, Finn Sverre; Bathen, Tone Frost; Tessem, May-Britt; Rye, Morten Beck.
A novel non-canonical wnt signature associated with Gleason score, recurrence, metastases and metabolic alterations in prostate cancer. The 8th National PhD Conference in Medical Imaging; 2016-11-21 - 2016-11-22
NTNU STO UiO UiT Untitled
 
46 Simovski, Boris; Drabløs, Finn Sverre; Gundersen, Sveinung; Johansen, Morten; Domanska, Diana Ewa; Azab, Abdulrahman; Sandve, Geir Kjetil; Hovig, Johannes Eivind.
The Genomic HyperBrowser. European Conference on Computational Biology; 2016-09-03 - 2016-09-07
NTNU UiO Untitled
 
47 Tessem, May-Britt; Bertilsson, Helena; Angelsen, Anders; Bathen, Tone Frost; Drabløs, Finn Sverre; Rye, Morten Beck.
A balanced tissue composition reveals new metabolic and gene expression markers in prostate cancer. PLOS ONE 2016 ;Volum 11.(4)
NTNU STO Untitled
 
2015
48 Arner, Erik; Daub, Carsten O; Vitting-Seerup, Kristoffer; Andersson, Robin; Lilje, Berit; Drabløs, Finn; Lennartsson, Andreas; Rönnerblad, Michelle; Hrydziuszko, Olga; Vitezic, Morana; Freeman, Tom; Alhendi, Ahmad; Arner, Peter; Axton, Richard; Baillie, Kenneth; Beckhouse, Anthony G.; Bodega, Beatrice; Briggs, James A.; Brombacher, Frank; Davis, Margareth; Detmar, Michael; Ehrlund, Anna; Endoh, Mitsuhiro; Eslami, Afsaneh; Fagiolini, Michela; Fairbairn, Lynsey; Faulkner, Geoffrey J.; Ferrai, Carmelo; Fischer, Malcolm E.; Forrester, Lesley; Goldowitz, Daniel; Guler, Reto; Ha, Thomas; Hara, Mitsuko; Herlyn, Meenhard; Ikawa, Tomokatsu; Kai, Chieko; Kawamoto, Hiroshi; Khachigian, Levon M.; Klinken, S Peter; Kojima, Soichi; Koseki, Haruhiko; Klein, Sarah; Mejherdt, Niklas; Miyaguchi, Ken; Mizuno, Yosuke; Morimoto, Mitsuru; Morris, Kelly J; Mummery, Christine.
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells. Science 2015 ;Volum 347.(6225) s. 1010-1014
NTNU Untitled
 
49 Baglo, Yan; Qian, Peng; Hagen, Lars; Berg, Kristian; Høgset, Anders; Drabløs, Finn; Gederaas, Odrun Arna.
Studies of the photosensitizer disulfonated meso-tetraphenyl chlorin in an orthotopic rat bladder tumor model. Photodiagnosis and Photodynamic Therapy 2015 ;Volum 12.(1) s. 58-66
NTNU OUS Untitled
 
50 Bahrami, Shahram; Ehsani, Rezvan; Drabløs, Finn.
A property-based analysis of human transcription factors. BMC Research Notes 2015 ;Volum 8.(1)
NTNU STO Untitled
 
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