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2017
1 Marsi, Erwin; Skidar, Utpal; Marco, Cristina; Barik, Biswanath; Sætre, Rune.
NTNU-1@ScienceIE at SemEval-2017 Task 10: Identifying and Labelling Keyphrases with Conditional Random Fields. SemEval 2017; 2017-08-03 - 2017-08-04
NTNU Untitled
 
2 Marsi, Erwin; Skidar, Utpal; Marco, Cristina; Barik, Biswanath; Sætre, Rune.
NTNU-1@ScienceIE at SemEval-2017 Task 10: Identifying and Labelling Keyphrases with Conditional Random Fields. I: 11th International Workshop on Semantic Evaluations (SemEval-2017). Association for Computational Linguistics 2017 ISBN 978-1-945626-55-5. s. 938-941
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2016
3 Bøhler, Henrik; Asla, Petter Fagerlund; Marsi, Erwin; Sætre, Rune.
IDI@NTNU at SemEval-2016 Task 6: Detecting Stance in Tweets Using Shallow Features and GloVe Vectors for Word Representation. I: The 10th International Workshop on Semantic Evaluation. Proceedings of the Workshop.. Association for Computational Linguistics 2016 ISBN 978-1-941643-95-2. s. 457-462
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4 Sætre, Rune; Nytrø, Øystein; Nordbø, Stein Jakob; Steinsbekk, Aslak.
Visual Exploration and Cohort Identification of Acute Patient Histories Aggregated from Heterogeneous Sources. HDMM @ ICDE 2016; 2016-05-16 - 2016-05-16
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5 Sætre, Rune; Nytrø, Øystein; Nordbø, Stein Jakob; Steinsbekk, Aslak.
Visual Exploration and Cohort Identification of Acute Patient Histories Aggregated from Heterogeneous Sources. I: 2016 IEEE 32nd International Conference on Data Engineering Workshops. IEEE 2016 ISBN 978-1-5090-2109-3. s. 71-77
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6 Wang, Alf Inge; Zhu, Meng; Sætre, Rune.
The Effect of Digitizing and Gamifying Quizzing in Classrooms. The 10th European Conference on Games Based Learning; 2016-10-06 - 2016-10-07
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7 Wang, Alf Inge; Zhu, Meng; Sætre, Rune.
The Effect of Digitizing and Gamifying Quizzing in Classrooms. I: Proceedings of The 10th European Conference on Games Based Learning. Academic Conferences and Publishing International Limited 2016 ISBN 978‐1‐911218‐09‐8. s. 729-737
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2015
8 Dahl, Unni Alice; Johnsen, Roar; Sætre, Rune; Steinsbekk, Aslak.
The influence of an intermediate care hospital on health care utilization among elderly patients - a retrospective comparative cohort study. BMC Health Services Research 2015 ;Volum 15.(48) s. -
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2014
9 Steinsbekk, Aslak; Berntsen, Gro Karine Rosvold; Schrader, Per; Sætre, Rune; Nytrø, Øystein.
Patients Judgment of Their Trajectories. International Journal of Integrated Care 2014 ;Volum 14. Suppl. Annual Conf Suppl s. -
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10 Sætre, Rune; Nytrø, Øystein.
PAsTAs: Fra store helsedata til forståelig informasjon. HelsIT 2014; 2014-10-14 - 2014-10-15
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2013
11 Berntsen, Gro Karine Rosvold; Nytrøe, Øystein; Sætre, Rune; Schrader, Per; Steinsbekk, Aslak.
Giving patients a voice - Patient evaluation of PAtients TrAjectories – The PasTAs protocol. Data Quality workshop; 2013-09-06 - 2013-09-06
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12 Stav, Erlend; Floch, Jacqueline; Khan, Mohammad Ullah; Sætre, Rune.
Using Meta-modelling for Construction of an End-User Development Framework. I: End-User Development. Springer 2013 ISBN 978-3-642-38705-0. s. 72-87
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2012
13 Andersstuen, Runar; Engell, Trond Bøe; Sætre, Rune; Gambäck, Björn.
A Multiple Platform Approach to Building a Bus Route Information System for Mobile Devices. Lecture Notes in Informatics 2012 ;Volum 204. s. 71-82
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14 Beltesbrekke, Ingvild Sættem; Sætre, Rune.
Venteliste på Fastlegeordningen. P1: Her og Nå [Radio] 2012-08-22
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15 Marcussen, Christian Jun; Eliassen, Lars Moland; Sætre, Rune; Gambäck, Björn.
Context-Awareness and Real-Time Information in an Intelligent Smartphone Application. Lecture Notes in Informatics 2012 ;Volum 204. s. 48-58
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16 Sætre, Rune; Gulla, Jon Atle.
ENDORS AS. Org. No. 998 622 980 MVA Registrert 2012-07-23 Etablert 2012-05-24
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17 Sætre, Rune; Gulla, Jon Atle.
FastlegeVakten. Endors.no Norge 2012
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18 Sætre, Rune; Nytrø, Øystein.
HEXAnord2, Proposal for a pipeline for capturing, cleaning and reasoning about patient events. Last HexaNord Meeting; 2012-09-12 - 2012-09-14
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19 Sætre, Rune; Nytrø, Øystein.
«Keeping patients out of hospital» Capturing care trajectories. Clinical NLP Workshop 2012; 2012-06-20 - 2012-06-21
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2011
20 Arighi, Cecilia N; Roberts, Phoebe M; Shashank, Agarwal; Bhattacharya, Sanmitra; Gianni, Cesareni; Chatr-aryamontri, Andrew; Clematide, Simon; Gaudet, Pascale; Giglio, Michelle Gwinn; Harrow, Ian; Huala, Eva; Krallinger, Martin; Leser, Ulf; Li, Donghui; Liu, Feifan; Lu, Zhlyong; Maltais, Lois J; Okazaki, Naoaki; Perfetto, Livia; Rinaldi, Fabio; Sætre, Rune; Salgado, David; Srinivasan, Padmini; Thomas, Philippe E; Toldo, Luca; Hirschman, Lynette; Wu, Cathy H..
BioCreative III interactive task: an overview. BMC Bioinformatics 2011 ;Volum 12. Suppl. 8 s. -
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21 Floch, Jacqueline; Herrmann, Peter Michael; Khan, Mohammad Ullah; Sanders, Richard; Stav, Erlend; Sætre, Rune.
End-User Service Composition in Mobile Pervasive Environments. Lecture Notes in Computer Science 2011 ;Volum 6654. s. 417-417
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22 Floch, Jacqueline; Stav, Erlend; Khan, Mohammad Ullah; Herrmann, Peter Michael; Sanders, Richard; Sætre, Rune.
End-User Service Composition in Mobile Pervasive Environments. Third International Symposium, IS-EUD 2011; 2011-06-07 - 2011-06-07
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23 Kano, Yoshinobu; Björne, Jari; Ginter, Filip; Salakoski, Tapio; Buyko, Ekaterina; Hahn, Udo; Cohen, Kevin Bretonnel; Verspoor, Karin; Roeder, Christophe; Hunter, Lawrence E.; Kilicoglu, Halil; Bergler, Sabine; Van Landeghem, Sofie; Van Parys, Thomas; Van de Peer, Yves; Miwa, Makoto; Ananiadou, Sophia; Neves, Mariana; Pascual-Montano, Alberto; Ozgur, Arzucan; Radev, Dragomir R.; Riedel, Sebastian; Sætre, Rune; Chun, Hong-Woo; Kim, Jin-Dong; Pyysalo, Sampo; Ohta, Tomoko; Tsujii, Jun'ichi.
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinformatics 2011 ;Volum 12. s. 481-481
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24 Kocbek, Simon; Sætre, Rune; Gregor, Stiglic; Kim, Jin-Dong; Pernek, Igor; Tsuruoka, Yoshimasa; Kokol, Peter; Ananiadou, Sophia; Tsujii, Jun'ichi.
Analysis of Gene Ranking Algorithms with Extraction of Relevant Biomedical Concepts from PubMed Publications. IEEE International Conference on Computational Advances in Bio and medical Sciences (ICCABS); 2011-02-03 - 2011-02-05
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25 Kocbek, Simon; Sætre, Rune; Gregor, Stiglic; Kim, Jin-Dong; Pernek, Igor; Tsuruoka, Yoshimasa; Kokol, Peter; Ananiadou, Sophia; Tsujii, Jun'ichi.
Analysis of Gene Ranking Algorithms with Extraction of Relevant Biomedical Concepts from PubMed Publications. I: 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS). IEEE conference proceedings 2011 ISBN 978-1-61284-851-8. s. 249-249
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26 Kocbek, Simon; Sætre, Rune; Stiglic, Gregor; Kim, Jin-Dong; Pernek, Igor; Tsuruoka, Yoshimasa; Kokol, Peter; Ananiadou, Sophia; Tsujii, Jun'ichi.
AGRA: analysis of gene ranking algorithms. Bioinformatics 2011 ;Volum 27.(8) s. 1185-1186
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27 Riedel, Sebastian; Sætre, Rune; Chun, Hong-Woo; Takagi, Toshihisa; Tsujii, Jun'ichi.
BIO-MOLECULAR EVENT EXTRACTION WITH MARKOV LOGIC. Computational intelligence 2011 ;Volum 27.(4) s. 558-582
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28 Rinaldi, Fabio; Kaljurand, Kaarel; Sætre, Rune.
Terminological resources for text mining over biomedical scientific literature. Artificial Intelligence in Medicine 2011 ;Volum 52.(2) s. 107-114
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29 Sætre, Rune; Khan, Mohammad Ullah; Herrmann, Peter Michael.
End-user Composition of Web-based Services: The “Plus Alpha” Approach. India-Norway Workshop on Web Concepts and Technologies 2011; 2011-10-03 - 2011-10-03
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30 Sætre, Rune; Khan, Mohammad Ullah; Herrmann, Peter Michael.
End-user Composition of Web-based Services: The “Plus Alpha” Approach. I: Proceedings of the India-Norway Workshop on Web Concepts and Technologies 2011. Tapir Akademisk Forlag 2011 ISBN 978-82-519-2837-3.
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31 Sætre, Rune; Khan, Mohammad Ullah; Stav, Erlend; Fernandez, Alfredo Perez; Herrmann, Peter Michael; Gulla, Jon Atle.
Towards Ontology-Driven Composition of Personalized Mobile Services by End-users. Natural Language Processing and Information Systems; 2011-06-28 - 2011-06-30
NTNU SINTEF Untitled
 
32 Sætre, Rune; Khan, Mohammad Ullah; Stav, Erlend; Fernandez, Alfredo Perez; Herrmann, Peter Michael; Gulla, Jon Atle.
Towards Ontology-Driven End-User Composition of Personalized Mobile Services. Lecture Notes in Computer Science 2011 ;Volum 6716. s. 242-245
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2010
33 Miwa, Makoto; Miyao, Yusuke; Sætre, Rune; Tsujii, Jun'ichi.
Entity-Focused Sentence Simplification for Relation Extraction. 23rd International Conference on Computational Linguistics; 2010-08-23 - 2010-08-27
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34 Miwa, Makoto; Sætre, Rune; Kim, Jin-Dong; Tsujii, Jun'ichi.
Event Extraction with Complex Event Classification Using Rich Features. Journal of Bioinformatics and Computational Biology 2010 ;Volum 8.(1) s. 131-146
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35 Ohta, Tomoko; Matsuzaki, Takuya; Okazaki, Naoaki; Miwa, Makoto; Sætre, Rune; Pyysalo, Sampo; Tsujii, Jun'ichi.
Medie and Info-pubmed: 2010 update. BMC Bioinformatics 2010 ;Volum 11.(5) Suppl. 5 s. -
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36 Okazaki, Naoaki; Cho, Han-Cheol; Sætre, Rune; Pyysalo, Sampo; Ohta, Tomoko; Tsujii, Jun'ichi.
The gene normalization and interactive systems of the University of Tokyo in the BioCreative III challenge. BioCreative III; 2010-09-13 - 2010-09-15
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37 Sætre, Rune; Yoshida, Kazuhiro; Miwa, Makoto; Matsuzaki, Takuya; Yoshinobu, Kano; Tsujii, Jun'ichi.
Extracting Protein-Interactions from Text with the Unified AkaneRE Event Extraction System. IEEE/ACM Transactions on Computational Biology & Bioinformatics 2010 ;Volum 7. s. 46-60
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38 Wang, Yue; Kim, Jin-Dong; Sætre, Rune; Pyysalo, Sampo; Ohta, Tomoko; Tsujii, Jun'ichi.
Improving the Inter-corpora Compatibility for Protein Annotations. Journal of Bioinformatics and Computational Biology 2010 ;Volum 8.(5) s. -
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2009
39 Miwa, Makoto; Sætre, Rune; Miyao, Yusuke; Tsujii, Jun'ichi.
Protein-Protein Interaction Extraction by Leveraging Multiple Kernels and Parsers. International Journal of Medical Informatics 2009 ;Volum 78.(12) s. e39-e46
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40 Sætre, Rune; Miwa, Makoto; Yoshida, Kazuhiro; Tsujii, Jun'ichi.
From Protein-Protein Interaction to Molecular Event Extraction. Proceedings of Natural Language Processing in Biomedicine; 2009-06-04 - 2009-06-05
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41 Sætre, Rune; Yoshida, Kazuhiro; Miwa, Makoto; Matsuzaki, Takuya; Kano, Yoshinobu; Tsujii, Jun'ichi.
AkaneRE Relation Extraction: Protein Interaction and Normalization in the BioCreAtIvE II.5 Challenge. BioCreative II.5; 2009-10-07 - 2009-10-09
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42 Wang, Yue; Kim, Jin-Dong; Sætre, Rune; Pyysalo, Sampo; Tsujii, Jun'ichi.
Investigating heterogeneous protein annotations toward cross-corpora utilization. BMC Bioinformatics 2009 ;Volum 10.(403) s. -
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2008
43 Leitner, Florian; Krallinger, Martin; Rodriguez-Penagos, Carlos; Hakenberg, Jörg; Plake, Conrad; Kuo, Cheng-Ju; Hsu, CH; Tsai, Richard TH; Hung, HC; Lau, William W; Johnson, Calvin A; Sætre, Rune; Yoshida, Kazuhiro; Chen, Yan Hua; Kim, S; Shin, SY; Zhang, BT; Baumgartner, WA; Hunter, L; Haddow, B; Matthews, M; Wang, XL; Ruch, P; Ehrler, F; Ozgur, A; Erkan, G; Radev, DR; Krauthammer, M; Luong, T; Hoffmann, R; Sander, C; Valencia, A.
Introducing meta-services for biomedical information extraction. Genome Biology 2008 ;Volum 9. s. -
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44 Miyao, Yusuke; Sagae, Kenji; Sætre, Rune; Matsuzaki, Takuya; Tsujii, Jun'ichi.
Evaluating Contributions of Natural Language Parsers to Protein-Protein Interaction Extraction. Bioinformatics 2008 ;Volum 25.(3) s. 394-400
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45 Sætre, Rune; Kemper, Brian; Oda, Kanae; Matsuoka, Yukiko; Kikuchi, Norihiro; Kitano, Hiroaki; Ananiadou, Sophia; Tsujii, Jun'ichi.
PathText/payao development: Text/pathway annotations. 9th International Conference on Systems Biology; 2008-08-22 - 2008-08-28
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46 Sætre, Rune; Kemper, Brian; Oda, Kanae; Okazaki, Naoaki; Matsuoka, Yukiko; Kikuchi, Norihiro; Kitano, Hiroaki; Tsuruoka, Yoshimasa; Ananiadou, Sophia; Tsujii, Jun'ichi.
Connecting Text Mining and Pathways using the PathText Resource. Language Resources and Evaluation Conference; 2008-05-26 - 2008-06-01
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47 Sætre, Rune; Kemper, Brian; Oda, Kanae; Okazaki, Naoaki; Matsuoka, Yukiko; Kikuchi, Norihiro; Kitano, Hiroaki; Tsuruoka, Yoshimasa; Ananiadou, Sophia; Tsujii, Jun'ichi.
PathText: Text Mining Tools Integrated with Biological Pathway. Genomes to Systems Conference 2008 Handbook; 2008-03-17 - 2008-03-19
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2007
48 Sætre, Rune; Ranang, Martin Thorsen; Steigedal, Tonje Strømmen; Stunes, Kamilla; Misund, Kristine; Thommesen, Liv; Lægreid, Astrid.
Webprot : online mining and annotation of biomedical literature using Google. I: Advanced computational methods for biocomputing and bioimaging. Nova Science Publishers, Inc. 2007 s. 189-206
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49 Sætre, Rune; Sagae, Kenji; Tsujii, Jun'ichi.
Syntactic features for protein-protein interaction extraction. 2nd International Symposium on Languages in Biology and Medicine; 2007-12-06 - 2007-12-07
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50 Sætre, Rune; Yoshida, Kazuhiro; Yakushiji, Akane; Miyao, Yusuke; Matsubayashi, Yuichiro; Ohta, Tomoko.
AKANE System: Protein-Protein Interaction Pairs in BioCreAtIvE2 Challenge, PPI-IPS subtask. Second BioCreative Challenge Evaluation Workshop; 2007-04-23 - 2007-04-25
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