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2021
1 Flobak, Åsmund.
IMPRESS-Norway presentert ved Onkologisk Forum 2020. Onkonytt 2021 (1) s. 54-56
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2 Touré, Vasundra; Flobak, Asmund; Niarakis, Anna; Vercruysse, Steven; Kuiper, Martin.
The status of causality in biological databases: data resources and data retrieval possibilities to support logical modeling. Briefings in Bioinformatics 2021 ;Volum 22.(4) s. -
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2020
3 Comte, Blandine; Baumbach, Jan; Benis, Arriel; Basílio, José; Debeljak, Nataša; Flobak, Åsmund; Franken, Christian; Harel, Nissim; He, Feng; Kuiper, Martin; Juan Albino Méndez, Pérez; Pujos-Guillot, Estelle; Režen, Tadeja; Rozman, Damjana; Schmid, Johannes A; Scerri, Jeanesse; Tieri, Paolo; Van Steen, Kristel; Sona, Vasudevan; Watterson, Steven; Schmidt, Harald H H W.
Network and Systems Medicine: Position Paper of the European Collaboration on Science and Technology Action on Open Multiscale Systems Medicine. Network and Systems Medicine 2020
NTNU STO Untitled
 
4 Egge, Julie Haugen; Flobak, Åsmund.
Slik skal kunstig intelligens gi bedre behandling for kreftpasienter. nrk.no [Internett] 2020-12-22
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5 Folkesson, Evelina; Niederdorfer, Barbara; To, Vu; Thommesen, Liv; Klinkenberg, Geir; Lægreid, Astrid; Flobak, Åsmund.
High-throughput screening reveals higher synergistic effect of MEK inhibitor combinations in colon cancer spheroids. Scientific Reports 2020 ;Volum 10.
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6 Niederdorfer, Barbara; Touré, Vasundra; Vazques, Miguel; Thommesen, Liv; Kuiper, Martin Tremen R.; Lægreid, Astrid; Flobak, Åsmund.
Strategies to Enhance Logic Modeling-Based Cell Line-Specific Drug Synergy Prediction. Frontiers in Physiology 2020 ;Volum 11. s. -
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7 Sofias, Alexandros Marios; Toner, Yohana C.; Meerwaldt, Anu E.; van Leent, Mandy M. T.; Soultanidis, Georgios; Elschot, Mattijs; Gonai, Haruki; Grendstad, Kristin; Flobak, Åsmund; Neckmann, Ulrike; Wolowczyk, Camilla; Fisher, Elizabeth L.; Reiner, Thomas; Davies, Catharina de Lange; Bjørkøy, Geir; Teunissen, Abraham J. P.; Ochando, Jordi; Pérez-Medina, Carlos; Mulder, Willem J. M.; Hak, Sjoerd.
Tumor Targeting by αvβ3-Integrin-Specific Lipid Nanoparticles Occurs via Phagocyte Hitchhiking. ACS Nano 2020 ;Volum 14.(7) s. 7832-7846
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8 Touré, Vasundra; Vercruysse, Steven; Acencio, Marcio Luis; Lovering, Ruth C.; Orchard, Sandra; Bradley, Glyn; Casals-Casas, Cristina; Chaouiya, Claudine; del-Toro, Noemi; Flobak, Åsmund; Gaudet, Pascale; Hermjakob, Henning; Hoyt, Charles Tapley; Licata, Luana; Lægreid, Astrid; Mungall, Christopher; Niknejad, Anne; Panni, Simona; Perfetto, Livia; Porras, Pablo; Pratt, Dexter; Saez-Rodriguez, Julio; Thieffry, Denis; Thomas, Paul; Türei, Dénes; Kuiper, Martin.
The Minimum Information about a Molecular Interaction Causal Statement (MI2CAST). Bioinformatics 2020 s. -
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9 Tsirvouli, Eirini; Touré, Vasundra; Niederdorfer, Barbara; Vazquez Garcia, Miguel; Flobak, Åsmund; Kuiper, Martin.
A middle-out modeling strategy to extend a colon cancer logical model improves drug synergy predictions in epithelial-derived cancer cell lines. Frontiers in Molecular Biosciences 2020 ;Volum 7:502573. s. 1-19
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10 Zobolas, John; Kuiper, Martin; Flobak, Åsmund.
emba: R package for analysis and visualization of biomarkers in boolean model ensembles. Journal of Open Source Software (JOSS) 2020 s. -
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11 Zobolas, John; Kuiper, Martin; Flobak, Åsmund.
emba: R package for analysis and visualization of biomarkers in boolean model ensembles. Journal of Open Source Software (JOSS) 2020 ;Volum 5.(53)
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2019
12 Flobak, Åsmund; Niederdorfer, Barbara; To, Vu; Thommesen, Liv; Klinkenberg, Geir; Lægreid, Astrid.
A high-throughput drug combination screen of targeted small molecule inhibitors in cancer cell lines. Scientific Data 2019 ;Volum 6. s. 1-10
NTNU SINTEF STO Untitled
 
13 Menden, Michael Patrick; Wang, Dennis; Mason, Mike J.; Szalai, Bence; Bulusu, Krishna C.; Guan, Yuanfang; Flobak, Åsmund; Kuiper, Martin; Lægreid, Astrid; Thommesen, Liv.
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen. Nature Communications 2019 ;Volum 10.(2674)
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14 Zobolas, John; Vázquez, Miguel; Kuiper, Martin; Flobak, Åsmund.
DrugLogics: An ensemble model analysis related to drug prediction performance [version 1; not peer reviewed]. F1000Research 2019, 8:113 (poster). NBS 2019; 2019-01-24 - 2019-01-27
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2018
15 Niederdorfer, Barbara; Vázquez, Miguel; Thommesen, Liv; Kuiper, Martin; Lægreid, Astrid; Flobak, Åsmund.
Logical model simulations predict drug synergies across different cancer cell lines. ISMB 2018; 2018-07-06 - 2018-07-10
NTNU Untitled
 
16 Sofias, Alexandros Marios; Ochando, Jordi; Flobak, Åsmund; Mulder, Willem J. M.; Hak, Sjoerd.
Tumor targeting by cRGD-modified nanoparticles is dominated by immune cell hitchhiking. WMIC 2018; 2018-09-12 - 2018-09-15
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17 Sofias, Alexandros Marios; Ochando, Jordi; Grendstad, Kristin; Flobak, Åsmund; Mulder, Willem J. M.; Hak, Sjoerd.
Tumor angiogenesis targeting by cRGD-modified nanoparticles is dominated by neutrophil hitchhiking. ESCDD 2018; 2018-04-11 - 2018-04-13
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18 Touré, Vasundra; Flobak, Åsmund; Lægreid, Astrid; Kuiper, Martin.
Knowledge management and standard representation of causal statements for systems modeling.. JOBIM 2018; 2018-07-03 - 2018-07-06
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2017
19 Flobak, Åsmund.
Mutasjoner, arv og miljø. Onkonytt 2017 ;Volum 2017.(2) s. 46-48
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20 Flobak, Åsmund.
NRK P1 Trøndelag Forskerpraten 3. april 2017: Om kreftforskning. Radio [Radio] 2017-04-03
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21 Flobak, Åsmund; Garcia, Miguel Vazquez; Lægreid, Astrid; Valencia, Alfonso.
CImbinator: a web-based tool for drug synergy analysis in small- and large-scale datasets. Bioinformatics 2017 ;Volum 33.(15) s. 2410-2412
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22 Touré, Vasundra; Flobak, Åsmund; Lægreid, Astrid; Kuiper, Martin Tremen R..
Extraction and representation of causal statements: Creating a model building resource for Systems Biology. COMBINE 2017; 2017-10-09 - 2017-10-13
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2016
23 Flobak, Åsmund.
DrugLogics: Rationalizing drug combination screening.. Internatioanl Conference on Systems Biology; 2016-09-16 - 2016-09-20
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24 Flobak, Åsmund; Steigedal, Tonje S.; Thommesen, Liv; Kuiper, Martin Tremen R.; Lægreid, Astrid.
Logical models for drug screen prioritization. European Conference on Computational Biology; 2016-09-03 - 2016-09-07
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2015
25 Flobak, Åsmund.
Fant to nye kombinasjoner av kreftmedisiner.
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26 Flobak, Åsmund.
Finner kreftmedisin som virker bedre med mindre doser. Adressa [Avis] 2015-08-28
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27 Flobak, Åsmund.
Nye medisinkombinasjoner kan redde liv. NRK P1 Norgesglasset [Radio] 2015-09-07
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28 Flobak, Åsmund.
Oppdaget mer effektiv kreftbehandling. Adresseavisen [Avis] 2015-08-29
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29 Flobak, Åsmund; Baudot, Anaïs; Remy, Elisabeth; Thommesen, Liv; Thieffry, Denis; Kuiper, Martin; Lægreid, Astrid.
Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling. PLoS Computational Biology 2015 ;Volum 11.(8)
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30 Tripathi, Sushil; Flobak, Åsmund; Chawla, Konika; Baudot, Anaïs; Bruland, Torunn; Thommesen, Liv; Kuiper, Martin Tremen R.; Lægreid, Astrid.
The gastrin and cholecystokinin receptors mediated signaling network: a scaffold for data analysis and new hypotheses on regulatory mechanisms. BMC Systems Biology 2015 ;Volum 9.(40) s. -
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2014
31 Flobak, Åsmund.
Kombinasjonsbehandling – veien til bedre kreftbehandling for den enkelte?.
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32 Flobak, Åsmund; Baudot, Anaïs; Remy, Elisabeth; Thommesen, Liv; Thieffry, Denis; Kuiper, Martin; Lægreid, Astrid.
Drug synergies in a gastric cancer cell line discovered by signal transduction modeling. Virtual Physiological Human Conference 2014; 2014-09-09 - 2014-09-12
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