Cristin

2020
1.	Huang, Kai-Wen; Reebye, Vikash; Czysz, Katherine; Ciriello, Simona; Dorman, Stephanie; Reccia, Isabella; Lai, Hong-Shiee; Peng, Ling; Kostomitsopoulos, Nikos; Nicholls, Joanna; Habib, Robert; Tomalia, Donald A.; Sætrom, Pål; Wilkes, Edmund; Cutillas, Pedro; Rossi, John; Habib, Nagy. Liver Activation of Hepatocellular Nuclear Factor-4α by Small Activating RNA Rescues Dyslipidemia and Improves Metabolic Profile. Molecular Therapy - Nucleic Acids 2020 ;Volum 19. s. 361-370 NTNU Untitled

2.	Konstantinidis, Ioannis; Sætrom, Pål; Mjelle, Robin; Nedoluzhko, Artem; Robledo, Diego; Fernandes, Jorge Manuel de Oliveira. Major gene expression changes and epigenetic remodelling in Nile tilapia muscle after just one generation of domestication. Epigenetics 2020 ;Volum 15.(10) s. 1052-1067 NORD NTNU Untitled

3.	Mjelle, Robin; Aass, Kristin Roseth; Sjursen, Wenche; Hofsli, Eva; Sætrom, Pål. sMETASeq: combined profiling of microbiota and host small RNAs. iScience 2020 NTNU STO Untitled

4.	Rolinski, Miłosz; Pietro Montaldo, Nicola; Aksu, Merdane Ezgi; Fordyce Martin, Sarah L.; Brambilla, Alessandro; Kunath, Nicolas; Johansen, Jostein; Erlandsen, Sten Even; Liabakk, Nina-Beate; Rian, Kristin; Bjørås, Magnar; Sætrom, Pål; van Loon, Barbara. Loss of Mediator complex subunit 13 (MED13) promotes resistance to alkylation through cyclin D1 upregulation. Nucleic Acids Research 2020 NTNU UiO Untitled

5.	Sarker, Debashis; Plummer, Ruth; Meyer, Tim; Sodergren, Mikael H; Basu, Bristi; Chee, Cheng Ean; Huang, Kai-Wen; Palmer, Daniel H; Ma, Yuk Ting; Evans, T R Jeff; Spalding, Duncan R C; Pai, Madhava; Sharma, Rohini; Pinato, David J; Spicer, James; Hunter, Sarah; Kwatra, Vineet; Nicholls, Joanna P; Collin, David; Nutbrown, Robert; Glenny, Helen; Fairbairn, Sonia; Reebye, Vikash; Voutila, Jon; Dorman, Stephanie; Andrikakou, Pinelopi; Lloyd, Peter; Felstead, Steve; Vasara, Jenni; Habib, Robert; Wood, Chris; Sætrom, Pål; Huber, Hans E; Blakey, David C.; Rossi, JJ; Habib, Nagy. MTL-CEBPA, a Small Activating RNA Therapeutic Upregulating C/EBP-α, in Patients with Advanced Liver Cancer: A First-in-Human, Multicenter, Open-Label, Phase I Trial. Clinical Cancer Research 2020 ;Volum 26.(15) s. 3936-3946 NTNU Untitled
2019
6.	Brian, Ben F; Jolicoeur, Adrienne S; Guerrero, Candace R.; Nunez, Myra G; Sychev, Zoi E; Hegre, Siv Anita; Sætrom, Pål; Habib, Nagy; Drake, Justin M; Schwertfeger, Kathryn L; Freedman, Tanya S.. Unique-region phosphorylation targets LynA for rapid degradation, tuning its expression and signaling in myeloid cells. eLIFE 2019 ;Volum 8. NTNU Untitled

7.	Konstantinidis, Ioannis; Sætrom, Pål; Fernandes, Jorge Manuel de Oliveira. Tissue-specific hydroxymethylome profiles of Nile tilapia Oreochromis niloticus at single nucleotide resolution. Aquaculture 2019; 2019-03-07 - 2019-03-11 NORD NTNU Untitled

8.	Kroustallaki, Pinelopi; Lirussi, Lisa; Carracedo Huroz, Sergio; You, Panpan; Esbensen, Qin Ying; Götz, Alexandra; Jobert, Laure; Alsøe, Lene; Sætrom, Pål; Gagos, Sarantis; Nilsen, Hilde. SMUG1 Promotes Telomere Maintenance through Telomerase RNA Processing. Cell reports 2019 s. - AHUS NTNU UiO Untitled

9.	Larose, Tricia L; Sætrom, Pål; Martinussen, Marit; Skogseth, Haakon; Sandanger, Torkjel M; Scélo, Ghislaine; McHale, Cliona M.; Jacobsen, Geir Wenberg; Smith, Martyn T.. In utero exposure to endocrine disrupting chemicals, micro-RNA profiles, and fetal growth: a pilot study protocol. Journal of Public Health Research 2019 ;Volum 8.(2) s. 62-66 NTNU STO UiT Untitled

10.	Løset, Mari; Solvin, Åshild Øksnevad; Chawla, Konika; Olsen, Lene Christin; Danielsen, Kjersti; Jenssen, Marita; Furberg, Anne-Sofie; Saunes, Marit; Hveem, Kristian; Sætrom, Pål. Differentially Expressed miRNAs and mRNAs in Psoriatic Skin. American Society for Human Genetics Annual Meeting; 2019-10-15 - 2019-10-19 NTNU UiT UNN STO Untitled

11.	Mjelle, Robin; Dima, Simona O; Bacalbasa, Nicolae; Chawla, Konika; Sorop, Andrei; Cucu, Dana; Herlea, Vlad; Sætrom, Pål; Popescu, Irinel. Comprehensive transcriptomic analyses of tissue, serum, and serum exosomes from hepatocellular carcinoma patients. BMC Cancer 2019 ;Volum 19.(1) s. 1-13 NTNU Untitled

12.	Mjelle, Robin; Sjursen, Wenche; Thommesen, Liv; Sætrom, Pål; Hofsli, Eva. Small RNA expression from viruses, bacteria and human miRNAs in colon cancer tissue and its association with microsatellite instability and tumor location. BMC Cancer 2019 ;Volum 19.(1) s. 1-12 NTNU STO Untitled

13.	Montaldo, Nicola Pietro; Bordin, Diana Lilian; Brambilla, Alessandro; Rösinger, Marcel; Martin, Sarah Fordyce; Bjørås, Karine Øian; Bradamante, Stefano; Aas, Per Arne; Furrer, Antonia; Olsen, Lene Christin; Kunath, Nicolas; Otterlei, Marit; Sætrom, Pål; Bjørås, Magnar; Samson, Leona D.; van Loon, Barbara. Alkyladenine DNA glycosylase associates with transcription elongation to coordinate DNA repair with gene expression. Nature Communications 2019 ;Volum 10.(1) s. - NTNU OUS UiO Untitled

14.	Samdal, Helle; Hegre, Siv Anita; Klima, Antonin; Stovner, Endre Bakken; Nørsett, Kristin Gabestad; Liabakk, Nina-Beate; Aas, Per Arne; Sætrom, Pål. Functional evaluation of long non-coding RNAs with potential roles during cell replication. Long Noncoding RNAs: From Molecular Mechanism to Functional Genetics; 2019-02-24 - 2019-02-28 NTNU Untitled

15.	Skogholt, Anne Heidi; Jensen, Espen Drevland; Ryeng, Einar; Grønberg, Bjørn Henning; Skorpen, Frank; Schønberg, Svanhild Margrethe Arentz; Sætrom, Pål. Robust messenger RNA (mRNA) markers in blood for lung cancer diagnosis. ASHG; 2019-10-18 - 2019-10-18 NTNU Untitled

16.	Solvin, Åshild Øksnevad; Chawla, Konika; Olsen, Lene Christin; Danielsen, Kjersti; Jenssen, Marita; Furberg, Anne-Sofie; Saunes, Marit; Hveem, Kristian; Sætrom, Pål; Løset, Mari. Combined mRNA and miRNA Analysis of Psoriatic Skin. The 34th Nordic Congress of Dermatology & Venereology; 2019-05-08 - 2019-05-10 NTNU STO UiT UNN Untitled

17.	Solvin, Åshild Øksnevad; Chawla, Konika; Olsen, Lene Christin; Danielsen, Kjersti; Jenssen, Marita; Furberg, Anne-Sofie; Saunes, Marit; Hveem, Kristian; Sætrom, Pål; Løset, Mari. Differentially Expressed miRNAs and mRNAs in Psoriatic Skin. European Society for Dermatological Research Annual Meeting; 2019-09-18 - 2019-09-21 NTNU STO UiT UNN Untitled

18.	Solvin, Åshild Øksnevad; Chawla, Konika; Olsen, Lene Christin; Danielsen, Kjersti; Jenssen, Marita; Furberg, Anne-Sofie; Saunes, Marit; Hveem, Kristian; Sætrom, Pål; Løset, Mari. Combined mRNA and miRNA Analysis of Psoriatic Skin. Forum for Nordic Dermato-Venereology 2019 ;Volum 24.(2) s. 60-61 NTNU STO UiT UNN Untitled

19.	Solvin, Åshild Øksnevad; Chawla, Konika; Olsen, Lene Christin; Danielsen, Kjersti; Jenssen, Marita; Furberg, Anne-Sofie; Saunes, Marit; Hveem, Kristian; Sætrom, Pål; Løset, Mari. Differentially Expressed miRNAs and mRNAs in Psoriatic Skin. Journal of Investigative Dermatology 2019 ;Volum 139.(9S) NTNU STO UiT UNN Untitled

20.	Stovner, Endre Bakken; Sætrom, Pål. epic2 efficiently finds diffuse domains in ChIP-seq data. Bioinformatics 2019 ;Volum 35.(21) s. 4392-4393 NTNU Untitled

21.	Stovner, Endre Bakken; Sætrom, Pål. PyRanges: efficient comparison of genomic intervals in Python. Bioinformatics 2019 ;Volum 36.(3) s. 918-919 NTNU Untitled

22.	Zaytseva-Zotova, Daria; Ruohola, Rita; Strand, Wenche Iren; Akbarzadeh, Anita; Haslene-Hox, Hanne; Arlov, Øystein; Vikenes, Anette; Hoel, Andrea Draget; Halaas, Øyvind; Sætrom, Pål; Klinkenberg, Geir; Aachmann, Finn Lillelund; Sletta, Håvard; Strand, Berit Løkensgard. Alginate hydrogels with tailored mechanical and biological properties for 3D fibroblast culture. DigitalLife 2019; 2019-09-05 - 2019-09-06 NTNU SINTEF Untitled

23.	Zhao, Xiaoyang; Reebye, Vikash; Hitchen, Paul; Fan, Jia; Jiang, Hongchi; Sætrom, Pål; Rossi, John; Habib, Nagy A; Huang, Kai-Wen. Mechanisms involved in the activation of C/EBP? by small activating RNA in hepatocellular carcinoma. Oncogene 2019 ;Volum 38.(18) s. 3446-3457 NTNU Untitled
2018
24.	Halaas, Øyvind; Sætrom, Pål; Arlov, Øystein; Haslene-Hox, Hanne; Beisvag, Vidar; Aachmann, Finn Lillelund; Åm, Heidrun; Klinkenberg, Geir; Sletta, Håvard; Strand, Berit Løkensgard. 3DLife – Emulating life in 3D with digital and experimental tissue models. DigitalLife 2018; 2018-03-20 - 2018-03-21 NTNU SINTEF Untitled

25.	Hegre, Siv Anita; Klima, Antonin; Stovner, Endre Bakken; Samdal, Helle; Nørsett, Kristin Gabestad; Liabakk, Nina-Beate; Aas, Per Arne; Sætrom, Pål. Long non-coding RNAs in epigenetic inheritance. Noncoding RNAs: Form, Function, Physiology; 2018-02-25 - 2018-03-01 NTNU Untitled

26.	Konstantinidis, Ioannis; Sætrom, Pål; Fernandes, Jorge Manuel de Oliveira. Fast muscle hydroxymethylation patterns in wild and captive Nile tilapia (Oreochromis niloticus) provide insights into fish domestication. GIA2018: 5th International Symposium on Genomics in Aquaculture; 2018-03-21 - 2018-03-23 NORD NTNU Untitled

27.	Olsen, Lene Christin; Sætrom, Pål; Witter, Menno. Detecting early molecular events in a mouse model of Alzheimer’s disease (AD) using single cell RNA sequencing. NORBIS annual conference; 2018-10-17 - 2018-10-19 NTNU Untitled

28.	Reebye, Vikash; Huang, Kai-Wen; Lin, Vivian; Jarvis, Sheba; Cutilas, Pedro; Dorman, Stephanie; Ciriello, Simona; Andrikakou, Pinelopi; Voutila, Jon; Sætrom, Pål; Mintz, Paul J; Reccia, Isabella; Rossi, John J; Huber, Hans; Habib, Robert; Kostomitsopoulos, Nikos; Blakey, David C.; Habib, Nagy A. Gene activation of CEBPA using saRNA: Preclinical studies of the first in human saRNA drug candidate for liver cancer. Oncogene 2018 ;Volum 37.(24) s. 3216-3228 NTNU Untitled

29.	Sarno, Antonio; Sætrom, Pål; Kavli, Bodil Merete; Pettersen, Henrik Sahlin. Genomic Uracil and Cancer. I: Genomic Uracil - Evolution, Biology, Immunology and Disease. World Scientific 2018 ISBN 978-981-3233-49-2. s. 183-244 NTNU Untitled
2017
30.	de rie, D; Abugesaissa, I; Alam, T; Arner, E; Ashoor, H; Åström, G; Babina, M; Bertin, N; Burroughs, AM; Carlisle, AJ; Daub, CO; Detmar, M; Daviatiiarov, R; Fort, A; Gebhard, C; Goldowitz, D; Guhl, S; Ha, TJ; Harschbager, J; Hasegawa, R; Hashimoto, K; Herlyn, M; Heutink, P; Hitchens, KJ; Hong, CC; Huang, E; Ishizu, Y; Kai, C; Kasukawa, T; Klinken, P; Lassmann, T; Lecellier, CH; Lee, W; Lizio, M; Makeev, V; Mathelier, Anthony; Medvededa, YA; Mejhert, N; Mungall, CJ; Noma, S; Ohshima, M; Okada-Hatakeyama, M; Persson, H; Rizzu, P; Roudnicky, F; Sætrom, Pål; Sato, H; Severin, J; Shin, JW; Swoboda, RK; Tarui, H; Toyoda, H; Vitting-Serup, K; Winterinham, L; Yamaguchi, Y; Yasuzawa, K; Yoneda, M; Yumoto, N; Zabierowsky, S; Zang, PG; Wells, CA; Summers, KM; Kawaii, H; Sandelin, A; Rehli, M; Hayashisaki, Y; Carninci, P; Forrest, ARR; de Hoon, MJL; De Hoon, Michiel J L. An integrated expression atlas of miRNAs and their promoters in human and mouse. Nature Biotechnology 2017 ;Volum 35.(9) s. 872-878 NTNU Untitled

31.	Hegre, Siv Anita; Klima, Antonin; Aas, Per Arne; Liabakk, Nina-Beate; Sætrom, Pål. Meta-Analysis of RNA expression identifies human cell-cycle genes. Keystone Symposia "Noncoding RNAs: From Disease to Targeted Therapeutics"; 2017-02-05 NTNU Untitled

32.	Hegre, Siv Anita; Samdal, Helle; Klima, Antonin; Stovner, Endre Bakken; Nørsett, Kristin; Aas, Per Arne; Liabakk, Nina-Beate; Sætrom, Pål. Long non-coding RNAs in epigenetic inheritance * Won Poster prize of 250 EUR at the EMBO\|EMBL Symposium. EMBO EMBL Symposium "The Non-Coding genome"; 2017-09-13 - 2017-09-16 NTNU Untitled

33.	Hegre, Siv Anita; Stovner, Endre Bakken; Sætrom, Pål. Find diffusely enriched chromatin domains in ChIP-seq data with epic. Keystone Symposia "Noncoding RNAs: From disease to targeted therapeutics"; 2017-02-05 - 2017-02-09 NTNU Untitled

34.	Klima, Antonin; Hegre, Siv Anita; Aas, Per Arne; Liabakk, Nina-Beate; Sætrom, Pål. Meta-analysis of RNA expression identifies human cell-cycle genes. Norbis – Annual National Conference; 2017-11-08 - 2017-11-10 NTNU Untitled

35.	Konstantinidis, Ioannis; Fernandes, Jorge Manuel de Oliveria; Sætrom, Pål. The first hydroxymethylation map of fast muscle in Nile tilapia (Oreochromis niloticus). Aquaculture Europe 2017; 2017-10-17 - 2017-10-20 NORD NTNU Untitled

36.	Landfors, Miriam; Johansen, Jostein; Aronsen, Jan Magnus; Vågbø, Cathrine Broberg; Doré, Louis C.; He, Chuan; Sjaastad, Ivar; Sætrom, Pål; Fedorcsák, Péter; Dahl, John Arne; Aanes, Håvard; Fusser, Markus; Klungland, Arne. Genome-wide profiling of DNA 5-hydroxymethylcytosine during rat Sertoli cell maturation. Cell Discovery 2017 ;Volum 3. s. - BJORKNES NTNU OUS UiO Untitled

37.	Mjelle, Robin; Sellæg, Kjersti; Sætrom, Pål; Thommesen, Liv; Sjursen, Wenche; Hofsli, Eva. Identification of metastasis-associated microRNAs in serum from rectal cancer patients. OncoTarget 2017 ;Volum 8.(52) s. 90077-90089 NTNU STO Untitled

38.	Olsen, Lene Christin; O'Reilly, Kally; Liabakk, Nina-Beate; Witter, Menno; Sætrom, Pål. MicroRNAs contribute to postnatal development of laminar differences and neuronal subtypes in the rat medial entorhinal cortex. Brain Structure and Function 2017 ;Volum 222.(7) s. 3107-3126 NTNU Untitled

39.	Olsen, Maria Belland; Hildrestrand, Gunn Annette; Scheffler, Katja; Vinge, Leif Erik; Alfsnes, Katrine; Palibrk, Vuk; Wang, Junbai; Neurauter, Christine Gran; Gomez, Luisa Fernanda Luna; Johansen, Jostein; Øgaard, Jonas; Ohm, Ingrid Kristine; Slupphaug, Geir; Kusnierczyk, Anna; Fiane, Arnt E; Brorson, Sverre Henning; Zhang, Lili; Gullestad, Lars; Louch, William Edward; Iversen, Per Ole; Østlie, Ingunn; Klungland, Arne; Christensen, Geir Arve; Sjaastad, Ivar; Sætrom, Pål; Yndestad, Arne; Aukrust, Pål; Bjørås, Magnar; Finsen, Alexandra. NEIL3-Dependent Regulation of Cardiac Fibroblast Proliferation Prevents Myocardial Rupture. Cell reports 2017 ;Volum 18. s. 82-92 NTNU OUS UiO Untitled

40.	Skogholt, Anne Heidi; Ryeng, Einar; Erlandsen, Sten Even; Skorpen, Frank; Arentz Schønberg, Svanhild Margrethe; Sætrom, Pål. Gene expression differences between PAXgene and Tempus blood RNA tubes are highly reproducible between independent samples and biobanks. BMC Research Notes 2017 ;Volum 10.(136) s. - NTNU Untitled

41.	Voutila, Jon; Reebye, Vikash; Roberts, Thomas C.; Protopapa, Pantelitsa; Andrikakou, Pinelopi; Blakey, David C.; Habib, Robert; Huber, Hans; Sætrom, Pål; Rossi, John J.; Habib, Nagy A.. Development and mechanism of small activating RNA targeting CEBPA, a novel therapeutic in clinical trials for liver cancer. Molecular Therapy 2017 ;Volum 25.(12) s. 2705-2714 NTNU Untitled
2016
42.	Johansen, Jostein; Chawla, Konika; Olsen, Lene Christin; Sætrom, Pål. Bioinformatics Core Facility. Seminar for staff at the future Faculty of Medicine and Health Sciences; 2016-11-10 - 2016-11-11 NTNU Untitled

43.	Klima, Antonin; Sætrom, Pål. Transcriptome-Wide Discovery of Cell-Cycle Genes. Norbis – Annual National Conference; 2016-09-14 - 2016-09-16 NTNU Untitled

44.	Krokan, Hans Einar; Kavli, Bodil Merete; Pettersen, Henrik Sahlin; Sætrom, Pål; Galashevskaya, Anastasia; Sarno, Antonio; Aas, Per Arne; Doseth, Berit; Slupphaug, Geir. Genomic Uracil - Important carcinogenic mutagen but normal intermediate in adaptive immunity. The 10th International 3R (Replication, recombination and repair) Symposium, Matsue, Japan; 2016-11-13 - 2016-11-17 NTNU Untitled

45.	Krokan, Hans Einar; Pettersen, Henrik Sahlin; Mjelle, Robin; Hegre, Siv Anita; Sætrom, Pål; Drabløs, Finn Sverre; Sarno, Antonio; Galashevskaya, Anastasia; Aas, Per Arne; Liabakk, Nina-Beate; Doseth, Berit; Slupphaug, Geir; Kavli, Bodil Merete. REGULATION OF BASE EXCISION REPAIR – CANONICAL AND NON-CANONICAL PROCESSING OF GENOMIC URACIL. 10th International Multiconference on Bioinformatics of Genome Regulation and Structure\Systems Biology; 2016-08-29 - 2016-09-03 NTNU UiO Untitled

46.	Krokan, Hans Einar; Slupphaug, Geir; Sætrom, Pål; Sarno, Antonio; Galashevskaya, Anastasia; Lundbæk, Marie Benner; Aas, Per Arne; Krokan, Ruth Haaland; Liabakk, Nina-Beate; Pettersen, Henrik Sahlin; Sousa, Mirta; Doseth, Berit; Kavli, Bodil Merete. Genomic uracil - Important carcinogenic mutagen but normal intermediate in adaptive immunity. Eurotox 2016; 2016-09-04 NTNU Untitled

47.	Langkilde, Ane; Olsen, Lene Christin; Sætrom, Pål; Drabløs, Finn Sverre; Besenbacher, Søren; Raaby, Line; Johansen, Claus; Iversen, Lars. Pathway Analysis of Skin from Psoriasis Patients after Adalimumab Treatment Reveals New Early Events in the Anti-Inflammatory Mechanism of Anti-TNF-α. PLOS ONE 2016 ;Volum 11.(12) s. - NTNU Untitled

48.	Robles, Ana I.; Olsen, Karina Standahl; Tsui, Dana W.T.; Georgoulias, Vassilis; Creaney, Jenette; Dobra, Katalin; Vyberg, Mogens; Minato, Nagahiro; Anders, Robert A.; Børresen-Dale, Anne-Lise; Zhou, Jianwei; Sætrom, Pål; Nielsen, Boye Schnack; Kirschner, Michaela B.; Krokan, Hans Einar; Papadimitrakopoulou, Vassiliki; Tsamardinos, Ioannis; Røe, Oluf Dimitri. Excerpts from the 1st international NTNU symposium on current and future clinical biomarkers of cancer: innovation and implementation, June 16th and 17th 2016, Trondheim, Norway. Journal of Translational Medicine 2016 ;Volum 14:295. s. - HNT NTNU OUS UiT Untitled

49.	Røe, Oluf Dimitri; Mjelle, Robin; Sætrom, Pål; Andreassen, Trygve; Bathen, Tone Frost; Hveem, Kristian. Serum microRNAs/enriched pathways in lung cancer 1-4 years before diagnosis: A pilot study from the HUNT Biobank, Norway.. Journal of Clinical Oncology 2016 (34) Suppl. abstr 11539 NTNU Untitled

50.	Stracquadanio, Giovanni; Wang, Xuting; Wallace, Marsha D; Grawenda, Anna M.; Zhang, Ping; Hewitt, Juliet; Zeron-Medina, Jorge; Castro-Giner, Francesc; Tomlinson, Ian P; Goding, Colin R.; Cygan, Kamil J; Fairbrother, William G; Thomas, Laurent; Sætrom, Pål; Gemignani, Federica; Landi, Stefano; Schuster-Böckler, Benjamin; Bell, Douglas A; Bond, Gareth L.. The importance of p53 pathway genetics in inherited and somatic cancer genomes. Nature Reviews. Cancer 2016 ;Volum 16.(4) s. 251-265 NTNU Untitled

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