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For å registrere i Cristin må du være vitenskapelig eller administrativt ansatt.
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2023
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| 1. | Almaas, Eivind. Insights from computational modelling of whole-cell metabolism. MISC Workshop; 2023-02-06 - 2023-02-10 NTNU |
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| 2. | Fiedler, Alexander Willi; Gundersen, Madeleine S.; Vo, Toan; Almaas, Eivind; Vadstein, Olav; Bakke, Ingrid. Phage therapy has little influence on the water microbiota while still preventing infection in Atlantic salmon. 4th International Fish microbiota Workshop; 2023-09-06 - 2023-09-08 NTNU |
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| 3. | Fiedler, Alexander Willi; Gundersen, Madeleine S.; Vo, Toan Phuc; Almaas, Eivind; Vadstein, Olav; Bakke, Ingrid. Phage therapy minimally affects the water microbiota in an Atlantic salmon (Salmo salar) rearing system while still preventing infection. Scientific Reports 2023 ;Volum 13.(1) s. - NTNU |
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| 4. | Karlsen, Emil; Gylseth, Marianne Cieslik; Schulz, Christian; Almaas, Eivind. A study of a diauxic growth experiment using an expanded dynamic flux balance framework. PLOS ONE 2023 ;Volum 18.(1) s. - NTNU |
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| 5. | Pettersen, Jakob Peder; Almaas, Eivind. Parameter inference for enzyme and temperature constrained genome-scale models. Scientific Reports 2023 ;Volum 13.(1) s. - NTNU |
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| 6. | Pettersen, Jakob Peder; Castillo, Sandra; Jouhten, Paula; Almaas, Eivind. Genome-scale metabolic models reveal determinants of phenotypic differences in non-Saccharomyces yeasts. BMC Bioinformatics 2023 ;Volum 24. s. - NTNU |
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2022
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| 7. | Jouhten, Paula; Konstantinidis, Dimitrios; Pereira, Filipa; Andrejev, Sergej; Grkovska, Kristina; Castillo, Sandra; Ghiachi, Payam; Beltran, Gemma; Almaas, Eivind; Mas, Albert; Warringer, Jonas; Gonzalez, Ramon; Morales, Pilar; Patil, Kiran R.. Predictive evolution of metabolic phenotypes using model-designed environments. Molecular Systems Biology 2022 ;Volum 18.(10) s. e10980- NTNU |
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| 8. | Karlsen, Emil; Gylseth, Marianne; Schulz, Christian; Almaas, Eivind. Investigating Diauxic Growth Using Dynamic Enzyme-Constrained Flux Balance Analysis. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022) | AIChE; 2022-09-28 - 2022-09-30 NTNU |
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| 9. | Pettersen, Jakob Peder; Almaas, Eivind. csdR, an R package for differential co-expression analysis. BMC Bioinformatics 2022 ;Volum 23. s. - NTNU |
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| 10. | Pettersen, Jakob Peder; Almaas, Eivind. What Are Enzyme and Temperature Dependent Genome-Scale Models (etcGEMs) and How Do They Behave?. 8th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2022); 2022-09-28 - 2022-09-30 NTNU |
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| 11. | Schulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. Analyzing the Biomass for an organism. Cobra conference; 2022-09-28 - 2022-09-30 NTNU |
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| 12. | Schulz, Christian; Simensen, Vetle; Karlsen, Emil; Almaas, Eivind. Analyzing the Biomass for an organism. DLN conference; 2022-10-20 - 2022-10-21 NTNU |
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| 13. | Simensen, Vetle; Schulz, Christian; Karlsen, Emil; Bråtelund, Signe; Burgos, Idun Maria Tokvam; Thorfinnsdottir, Lilja Brekke; Garcia Calvo, Laura; Bruheim, Per; Almaas, Eivind. Experimental determination of Escherichia coli biomass composition for constraint-based metabolic modeling. PLOS ONE 2022 ;Volum 17.(1) s. - NTNU |
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| 14. | Simensen, Vetle; Seif, Yara; Almaas, Eivind. Phenotypic response of yeast metabolic network to availability of proteinogenic amino acids. Frontiers in Molecular Biosciences 2022 ;Volum 9. s. - NTNU |
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| 15. | Voigt, Andre; Omholt, Stig William; Almaas, Eivind. Comparing the impact of vaccination strategies on the spread of COVID-19, including a novel household-targeted vaccination strategy. PLOS ONE 2022 ;Volum 17.(2) s. - NTNU |
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| 16. | Wolowczyk, Camilla; Neckmann, Ulrike; Aure, Miriam Ragle; Hall, Martina; Johannessen, Bjarne; Zhao, Sen; Skotheim, Rolf I.; Andersen, Sonja Benedikte; Zwiggelaar, Rosalie Theda Margien; Steigedal, Tonje S.; Lingjærde, Ole Christian; Sahlberg, Kristine Kleivi; Almaas, Eivind; Bjørkøy, Geir. NRF2 drives an oxidative stress response predictive of breast cancer. Free Radical Biology & Medicine 2022 ;Volum 184. s. 170-184 NTNU STO OUS UiO VV |
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2021
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| 17. | Almaas, Eivind. How computational models of epidemic spread can inform decision-making dilemmas. The ethics of the Covid-19 pandemic; 2021-06-03 - 2021-06-04 NTNU |
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| 18. | Bernstein, David B.; Sulheim, Snorre; Almaas, Eivind; Segrè, Daniel. Addressing uncertainty in genome-scale metabolic model reconstruction and analysis. Genome Biology 2021 ;Volum 22. s. 1-22 NTNU SINTEF |
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| 19. | Joudeh, Nadeem; Saragliadis, Athanasios; Schulz, Christian; Voigt, Andre; Almaas, Eivind; Linke, Dirk. Transcriptomic Response Analysis of Escherichia coli to Palladium Stress. Frontiers in Microbiology 2021 ;Volum 12. s. - UiO NTNU |
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| 20. | Karlsen, Emil; Almaas, Eivind. Modeling bacteria for production of sustainable bioconcrete. Regular department seminar, IBT NTNU; 2021-04-28 - 2021-04-28 NTNU |
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| 21. | Ofaim, Shany; Sulheim, Snorre; Almaas, Eivind; Sher, Daniel; Segrè, Daniel. Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus. Frontiers in Genetics 2021 ;Volum 12. s. - NTNU SINTEF |
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| 22. | Pettersen, Jakob Peder; Gundersen, Madeleine S.; Almaas, Eivind. Robust bacterial co-occurence community structures are independent of r- and K-selection history. Scientific Reports 2021 ;Volum 11. s. - NTNU |
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| 23. | Schulz, Christian; Kumelj, Tjasa; Karlsen, Emil; Almaas, Eivind. Genome-scale metabolic modelling when changes in environmental conditions affect biomass composition. PLoS Computational Biology 2021 ;Volum 17.(5) s. - NTNU |
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| 24. | Simensen, Vetle; Voigt, Andre; Almaas, Eivind. High‐quality genome‐scale metabolic model of Aurantiochytrium sp. T66. Biotechnology and Bioengineering 2021 ;Volum 118. s. 2105-2117 NTNU |
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| 25. | Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind. Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters. BMC Bioinformatics 2021 ;Volum 22. s. - NTNU SINTEF |
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| 26. | Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind. Correction to: Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters (BMC Bioinformatics, (2021), 22, 1, (81), 10.1186/s12859-021-03985-0). BMC Bioinformatics 2021 ;Volum 22.(1) s. - NTNU SINTEF |
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| 27. | Sulheim, Snorre; Kumelj, Tjasa; van Dissel, Dino; Salehzadeh-Yazdi, Ali; Du, Chao; Van Wezel, Gilles P.; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard. A systems comparison of Streptomyces coelicolor M1152 and M145 reveals major metabolic rewiring. COBRA 2021; 2021-03-01 - 2021-03-02 NTNU SINTEF |
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| 28. | Voigt, Andre; Almaas, Eivind. Vaksinering av voksne er ikke nok. nrk.no/ytring 2021 NTNU |
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| 29. | Voigt, Andre; Almaas, Eivind; Omholt, Stig William. Med smartere vaksinestrategi kan vi åpne Norge raskere – prioriter store husholdninger. Dagens næringsliv 2021 NTNU |
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| 30. | Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William; Almaas, Eivind. Containing pandemics through targeted testing of households. BMC Infectious Diseases 2021 ;Volum 21. s. - NTNU |
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| 31. | Voigt, Andre; Martyushenko, Nikolay; Karlsen, Emil; Hall, Martina; Nyhamar, Kristen; Omholt, Stig William; Almaas, Eivind. Correction to: Containing pandemics through targeted testing of households (BMC Infectious Diseases, (2021), 21, 1, (548), 10.1186/s12879-021-06256-8). BMC Infectious Diseases 2021 ;Volum 21.(1) s. - NTNU |
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2020
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| 32. | Almaas, Eivind. Stories of network analysis: Cellular metabolism to COVID-19. What is Life? Lecture series 2020; 2020-05-12 - 2020-05-12 NTNU |
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| 33. | Gysi, Deisy Morselli; de Miranda Fragoso, Tiago; Zebardast, Fatemeh; Bertoli, Wesley; Busskamp, Volker; Almaas, Eivind; Nowick, Katja. Whole transcriptomic network analysis using Co-expression Differential Network Analysis (CoDiNA). PLOS ONE 2020 ;Volum 15.(10) s. 1-28 NTNU |
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| 34. | Hall, Martina; Kültz, Dietmar; Almaas, Eivind. Identification of key proteins involved in stickleback environmental adaptation with system-level analysis. Physiological Genomics 2020 ;Volum 52.(11) s. 531-548 NTNU |
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| 35. | Hall, Martina; Skogholt, Anne Heidi; Almaas, Eivind. Network approach for identifying the most common paths of cardiovascular disease history. NetSci; 2020-09-21 - 2020-09-25 NTNU |
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| 36. | Omholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. Derfor bør norske myndigheter endre sin teststrategi. Gemini 2020 NTNU UiB |
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| 37. | Omholt, Stig William; Almaas, Eivind; Voigt, Andre; Hovd, Morten; Fossen, Thor Inge; Steinsland, Ingelin. Omfattende og rettet testing for covid-19 er en billig, lite inngripende og effektiv intervensjonsstrategi. Aftenposten (morgenutg. : trykt utg.) 2020 UiB NTNU |
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| 38. | Pettersen, Jakob Peder; Vadstein, Olav; Almaas, Eivind. What do co-occurence network actually tell us? A case study.. NetSci 2020; 2020-09-14 - 2020-09-27 NTNU |
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| 39. | Røkke, Gunvor Bjerkelund; Hohmann-Marriott, Martin Frank; Almaas, Eivind. An adjustable algal chloroplast plug-and-play model for genome-scale metabolic models. PLOS ONE 2020 ;Volum 15.(2) s. - NTNU |
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| 40. | Schulz, Christian; Almaas, Eivind. Beer in the NMR - Who left Fingerprints?. NORBIS anual conference; 2020-11-03 - 2020-11-03 NTNU |
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| 41. | Schulz, Christian; Almaas, Eivind. Combining Theory and Praxis: Measuring (Microbial) Biomass Composition for Genome-Scale Metabolic Modelling. NBS contact meeting; 2020-01-23 - 2020-01-26 NTNU |
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| 42. | Schulz, Christian; Almaas, Eivind. First project meeting presentation. BedPan project meeting; 2020-03-04 - 2020-03-05 NTNU |
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| 43. | Schulz, Christian; Almaas, Eivind. Genome-scale reconstructions to assess metabolic phylogeny and organism clustering. PLOS ONE 2020 s. - NTNU |
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| 44. | Sulheim, Snorre; Fredrik A., Fossheim; Almaas, Eivind. Automatic reconstruction of metabolic pathways from annotated biosynthetic gene clusters. NORBIS annual national conference 2020; 2020-11-03 - 2020-11-04 SINTEF NTNU |
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| 45. | Sulheim, Snorre; Kumelj, Tjasa; van Dissel, Dino; Salehzadeh-Yazdi, Ali; Du, Chao; Van Wezel, Gilles P.; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard J. Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production. iScience 2020 ;Volum 23.(9) s. - NTNU SINTEF |
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2019
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| 46. | Almaas, Eivind. Computational analysis & prediction of phenotypes.. and some experiments. Guest Lecture; 2019-11-15 - 2019-11-15 NTNU |
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| 47. | Almaas, Eivind. Genome to phenotypes through computational modeling. Guest Lecture; 2019-09-11 - 2019-09-11 NTNU |
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| 48. | Almaas, Eivind. How to go on a sabbatical. IBT's weekly Department lunch; 2019-08-21 NTNU |
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| 49. | Almaas, Eivind. On the mapping of genome to phenotypes through computational modeling. Guest Lecture; 2019-09-23 - 2019-09-23 NTNU |
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| 50. | Almaas, Eivind. On the mapping of genome to phenotypes through computational modeling. Guest Lecture; 2019-09-24 - 2019-09-24 NTNU |
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