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2020
1 Bösl, Korbinian; Ghavidel, Fatemeh; Tekle, Kidane M; Kleppe, Rune; Hjerde, Erik; Drabløs, Finn; Hovig, Eivind; Våge, Dag Inge; Willassen, Nils Peder; Petersen, Kjell; Jonassen, Inge.
End-to-End Data Management Toolkit for Norwegian Life Scientists. 56th Contact Meeting of the Norwegian Biochemical Society; 2020-01-23 - 2020-01-26
NTNU UiB UiO UiT NMBU Untitled
 
2 Eide, Marta; Goksøyr, Anders; Yadetie, Fekadu; Gilabert, Alejandra; Bartosova, Zdenka; Frøysa, Håvard G; Fallahi, Shirin; Zhang, Xiaokang; Blaser, Nello; Jonassen, Inge; Bruheim, Per; Alendal, Guttorm; Brun, Morten; Porte, Cinta; Karlsen, Odd Andre.
A multi-omics approach to study Ppar-mediated regulation of lipid metabolism in Atlantic cod (Gadus morhua). 8th Norwegian Environemntal Toxicology Symposium (NETS) 2020; 2020-11-04 - 2020-11-05
UiB NTNU Untitled
 
3 Khan, Essa Ahsan; Zhang, Xiaokang; Hanna, Eileen Marie; Bartosova, Zdenka; Yadetie, Fekadu; Jonassen, Inge; Goksøyr, Anders; Arukwe, Augustine.
Quantitative transcriptomics, and lipidomics in evaluating ovarian developmental effects in Atlantic cod (Gadus morhua) caged at a capped marine waste disposal site. Environmental Research 2020 ;Volum 189:109906. s. 1-11
NTNU UiB Untitled
 
4 Khan, Essa Ahsan; Zhang, Xiaokang; Hanna, Eileen Marie; Yadetie, Fekadu; Jonassen, Inge; Goksøyr, Anders; Arukwe, Augustine.
Application of quantitative transcriptomics in evaluating the ex vivo effects of per- and polyfluoroalkyl substances on Atlantic cod (Gadus morhua) ovarian physiology. Science of the Total Environment 2020 s. 1-11
NTNU UiB Untitled
 
5 Lekang, Katrine; Lanzén, Anders; Jonassen, Inge; Thompson, Eric; Troedsson, Christofer.
Evaluation of a eukaryote phylogenetic microarray for environmental monitoring of marine sediments. Marine Pollution Bulletin 2020 ;Volum 154:111102.(May) s. 1-9
NORCE UiB UiO Untitled
 
6 Romanowska, Julia; Haaland, Øystein Ariansen; Jugessur, Astanand; Gjerdevik, Miriam; Xu, Zongli; Taylor, Jack A.; Wilcox, Allen J; Jonassen, Inge; Lie, Rolv T.; Gjessing, Håkon K..
Gene-methylation interactions: Discovering region-wise DNA methylation levels that modify SNP-associated disease risk. Clinical Epigenetics 2020 ;Volum 12. s. 1-18
FHI UiB Untitled
 
7 Sanchez Nido, Gonzalo; Dick, Fiona; Toker, Lilah; Petersen, Kjell; Alves, Guido Werner; Tysnes, Ole-Bjørn; Jonassen, Inge; Haugarvoll, Kristoffer; Tzoulis, Charalampos.
Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition. Acta neuropathologica communications 2020 ;Volum 8. s. -
HAUKELAND SUS UiB UIS Untitled
 
8 Xue, Yaxin; Jonassen, Inge; Øvreås, Lise; Tas, Neslihan.
Metagenome-assembled genome distribution and key functionality highlight importance of aerobic metabolism in Svalbard permafrost. FEMS Microbiology Ecology 2020 ;Volum 96.(5) s. -
UiB UNIS Untitled
 
9 Xue, Yaxin; Lanzén, Anders; Jonassen, Inge.
Reconstructing ribosomal genes from large scale total RNA meta-transcriptomic data. Bioinformatics 2020 ;Volum 36.(11) s. 3365-3371
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10 Zhang, Xiaokang; Jonassen, Inge.
RASflow: an RNA-Seq analysis workflow with Snakemake. BMC Bioinformatics 2020 ;Volum 21.(1) s. -
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2019
11 Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders.
The chemical defensome of Atlantic cod (Gadus morhua). NSFT vintermøte; 2019-01-24 - 2019-01-27
UiB Untitled
 
12 Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Goldstone, Jared V.; Stegeman, John J.; Jonassen, Inge; Goksøyr, Anders.
Chemical warfare in the aquatic environment - The chemical defensome networks of model fish species. Digital Life Norway conference; 2019-09-05 - 2019-09-06
UiB Untitled
 
13 Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Goldstone, Jared V.; Stegeman, John J.; Jonassen, Inge; Goksøyr, Anders.
Chemical warfare in the marine environment. Ocean Outlook 2019; 2019-05-09 - 2019-05-10
UiB Untitled
 
14 Goksøyr, Anders; Alendal, Guttorm; Aranguren-Abadía, Libe; Arukwe, Augustine; Blaser, Nello; Brun, Morten; Celander, Malin; Dale, Karina; Denslow, Nancy; Eide, Marta; Fallahi, Shirin; Goksøyr, Siri Øfsthus; Goldstone, Jared V.; Grøsvik, Bjørn Einar; Hanna, Eileen Marie; Hylland, Ketil; Jonassen, Inge; Khan, Essa Ahsan; Lille-Langøy, Roger; Lyche, Jan Ludvig; Müller, Mette Helen Bjørge; Olsvik, Pål Asgeir; Pampanin, Daniela Maria; Porte, Cinta; Skaug, Hans J.; Tairova, Zhanna; Yadetie, Fekadu; Zhang, Xiaokang; Karlsen, Odd Andre.
dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA) – HIGHLIGHTS SO FAR. 20th Pollutant Responses in Marine Organisms; 2019-05-19 - 2019-05-22
UiB HAVFORSK NORD UIS NMBU NTNU UiO Untitled
 
15 Goksøyr, Anders; Alendal, Guttorm; Aranguren-Abadía, Libe; Arukwe, Augustine; Blaser, Nello; Brun, Morten; Celander, Malin; Dale, Karina; Eide, Marta; Fallahi, Shirin; Goksøyr, Siri Øfsthus; Hanna, Eileen Marie; Goldstone, Jared V.; Grøsvik, Bjørn Einar; Hylland, Ketil; Jonassen, Inge; Khan, Essa Ahsan; Lille-Langøy, Roger; Lyche, Jan Ludvig; Müller, Mette Helen Bjørge; Olsvik, Pål Asgeir; Pampanin, Daniela Maria; Porte, Cinta; Skaug, Hans J.; Stegeman, John J.; Tairova, Zhanna; Yadetie, Fekadu; Zhang, Xiaokang; Karlsen, Odd Andre.
dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA) – HIGHLIGHTS SO FAR. Digitalt Liv Årskonferanse 2019; 2019-09-05 - 2019-09-06
HAVFORSK NORD UIS NMBU NTNU UiB UiO Untitled
 
16 Hanna, Eileen Marie; Zhang, Xiaokang; Eide, Marta; Yadetie, Fekadu; Blaser, Nello; Alendal, Guttorm; Goksøyr, Anders; Jonassen, Inge.
A draft metabolic reconstruction of Atlantic cod (Gadus morhua) liver: how to and what for?. NSFT Winter meeting; 2019-01-24 - 2019-09-27
UiB Untitled
 
17 Hanna, Eileen Marie; Zhang, Xiaokang; Fallahi, Shirin; Eide, Marta; Yadetie, Fekadu; Blaser, Nello; Alendal, Guttorm; Goksøyr, Anders; Jonassen, Inge.
A draft metabolic reconstruction of Atlantic cod (Gadus morhua) liver. DigitalLife 2019; 2019-09-05 - 2019-09-06
UiB Untitled
 
18 Ison, Jon; Ienasescu, Hans; Chmura, Piotr; Rydza, Emil; Ménager, Hervé; Kalaš, Matúš; Schwämmle, Veit; Grüning, Björn; Beard, Niall; Lopez, Rodrigo; Duvaud, Severine; Stockinger, Heinz; Persson, Bengt; Svobodová Vařeková, Radka; Raček, Tomáš; Vondrášek, Jiří; Peterson, Hedi; Salumets, Ahto; Jonassen, Inge; Hooft, Rob; Nyrönen, Tommi; Valencia, Alfonso; Capella, Salvador; Gelpí, Josep; Zambelli, Federico; Savakis, Babis; Leskošek, Brane; Rapacki, Kristoffer; Blanchet, Christophe; Jimenez, Rafael; Oliveira, Arlindo; Vriend, Gert; Collin, Olivier; van Helden, Jacques; Løngreen, Peter; Brunak, Søren.
The bio.tools registry of software tools and data resources for the life sciences. Genome Biology 2019 ;Volum 20. s. -
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19 Nielsen, Rune; Xue, Yaxin; Jonassen, Inge; Haaland, Ingvild; Kommedal, Øyvind; Wiker, Harald G; Drengenes, Christine; Bakke, Per S.; Eagan, Thomas M.
Repeated bronchoscopy examination of the airway microbiome. European Respiratory Journal 2019 ;Volum 54. Suppl. 63
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20 Rye, Morten Beck; Nygård, Ståle; Drabløs, Finn; Petersen, Kjell; Våge, Dag Inge; Willassen, Nils Peder; Hovig, Eivind; Jonassen, Inge.
ELIXIR.NO - The national infrastructure of bioinformatics. Norwegian Biochemical Society 55th Contact Meeting; 2019-01-24 - 2019-01-27
NTNU OUS NMBU UiB UiO UiT Untitled
 
21 Xue, Yaxin; Jonassen, Inge; Øvreås, Lise; Tas, Neslihan.
Bacterial and archaeal metagenome-assembled genome sequences from Svalbard permafrost. Microbiology Resource Announcements (MRA) 2019 ;Volum 8:e00516-19.(27) s. 1-3
UiB UNIS Untitled
 
22 Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Reboa, Anna; Aranguren-Abadía, Libe; Eide, Marta; Blaser, Nello; Brun, Morten; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre.
EFFECTS OF SELECTED ENVIRONMENTAL ESTROGENS ON EXPRESSION OF FIBROBLAST GROWTH FACTOR SIGNALING PATHWAY GENES IN THE LIVER OF ATLANTIC COD (GADUS MORHUA) IN VIVO AND EX VIVO. 20th Pollutant Responses in Marine Organisms; 2019-05-19 - 2019-05-22
UiB Untitled
 
23 Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Reboa, Anna; Aranguren-Abadía, Libe; Eide, Marta; Blaser, Nello; Brun, Morten; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre.
Toxicogenomic responses in Atlantic cod (Gadus morhua) after treatment with selected environmental contaminants in vivo and ex vivo. NSFT Winter meeting, Beitostølen, January 24-27, 2019; 2019-01-24 - 2019-01-27
UiB Untitled
 
24 Zhang, Xiaokang; Eide, Marta; Karlsen, Odd Andre; Hanna, Eileen Marie; Brun, Morten; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders.
THE CHEMICAL DEFENSOME OF ATLANTIC COD (GADUS MORHUA): HOW DOES IT DIFFER FROM DEFENSOME NETWORKS IN OTHER TELEOST SPECIES?. 20th International Symposium on Pollutant Responses In Marine Organisms; 2019-05-19 - 2019-05-22
UiB Untitled
 
25 Zhang, Xiaokang; Jonassen, Inge.
A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-Treated Atlantic Cod (Gadus Morhua) Liver. I: Nordic Artificial Intelligence Research and Development: Third Symposium of the Norwegian AI Society, NAIS 2019. Springer 2019 ISBN 978-3-030-35664-4. s. 114-123
UiB Untitled
 
26 Zhang, Xiaokang; Jonassen, Inge.
A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-treated Atlantic Cod (Gadus morhua) Liver. The 2019 Symposium of the Norwegian AI Society; 2019-05-27 - 2019-05-28
UiB Untitled
 
27 Zhang, Xiaokang; Jonassen, Inge.
An Ensemble Feature Selection Framework Integrating Stability. 2019 IEEE International Conference on Bioinformatics and Biomedicine; 2019-11-18 - 2019-11-21
UiB Untitled
 
28 Zhang, Xiaokang; Jonassen, Inge.
RASflow: An Easy-to-use RNA-Seq Analysis Workflow. DLN 2019 annual conference; 2019-09-05 - 2019-09-06
UiB Untitled
 
29 Zhang, Xiaokang; Jonassen, Inge.
An Ensemble Feature Selection Framework Integrating Stability. I: 2019 IEEE International Conference on Bioinformatics and Biomedicine. IEEE Press 2019 ISBN 9781728118673. s. 2792-2798
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2018
30 Blaser, Nello; Hanna, Eileen Marie; Brun, Morten; Eide, Marta; Yadetie, Fekadu; Goksøyr, Anders; Jonassen, Inge.
Discovering pathway perturbations with topological edge set enrichment analysis (TESEA). ISGSB; 2018-09-24 - 2018-09-28
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31 Dimitrakopoulou, Konstantina; Wik, Elisabeth; Akslen, Lars A.; Jonassen, Inge.
Deblender: A semi-/unsupervised multi-operational computational method for complete deconvolution of expression data from heterogeneous samples. BMC Bioinformatics 2018 ;Volum 19.(1) s. 1-17
HAUKELAND UiB Untitled
 
32 Dondrup, Michael; Zhang, Wei; Nilsen, Frank; Jonassen, Inge.
LiceBase – genom-data som kan bidra til kontroll av lakselus. HAVBRUK2018; 2018-04-18 - 2018-04-20
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33 Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders.
MODELLING THE CHEMICAL DEFENSOME NETWORKS - a comparative visualisation of the defense genes and interactions in two fish species and human. 19th International Conference on Systems Biology (ICSB); 2018-10-28 - 2018-11-01
UiB Untitled
 
34 Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Puntervoll, Pål; Jonassen, Inge; Goksøyr, Anders.
Modelling the chemical defensome network - a dynamic visualisation of the involved genes and pathways in two fish species and humans. DigitalLife2018; 2018-03-20 - 2018-03-21
UiB Untitled
 
35 Eide, Marta; Zhang, Xiaokang; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Puntervoll, Pål; Jonassen, Inge; Goksøyr, Anders.
Modelling The Chemical Defensome Networks - A Comparative Dynamic Visualisation Of The Involved Genes And Interactions In Two Fish Species And Humans. 31st ESCPB Congress; 2018-09-09 - 2018-09-12
UiB Untitled
 
36 Goksøyr, Anders; Alendal, Guttorm; Aranguren Abadía, Libe; Arukwe, Augustine; Blaser, Nello; Brun, Morten; Celander, Malin; Dale, Karina; Dankel, Dorothy Jane; Denslow, Nancy; Eide, Marta; Fallahi, Shirin; Frøysa, Håvard G; Ghavidel, Fatemeh; Goksøyr, Siri Øfsthus; Goldstone, Jared V.; Grøsvik, Bjørn Einar; Hanna, Eileen Marie; Hylland, Ketil; Jonassen, Inge; Khan, Essa Ahsan; Kleppe, Rune; Lille-Langøy, Roger; Lyche, Jan Ludvig; Mayer, Ian; Müller, Mette Helen Bjørge; Olsvik, Pål Asgeir; Pampanin, Daniela Maria; Porte, Cinta; Skaug, Hans J.; Stegeman, John J.; Tairova, Zhanna; Yadetie, Fekadu; Zhang, Xiaokang; Karlsen, Odd Andre.
dCOD 1.0: DECODING THE SYSTEMS TOXICOLOGY OF ATLANTIC COD (GADUS MORHUA). ASLO 2018 Summer Meeting; 2018-06-10 - 2018-06-15
HAVFORSK NORD NTNU UiB UiO UIS NMBU Untitled
 
37 Hanna, Eileen Marie; Blaser, Nello; Brun, Morten; Yadetie, Fekadu; Goksøyr, Anders; Jonassen, Inge.
Persistent homology and network analyses reveal key gene interactions affected by environmental pollutants in Atlantic cod. Digital Life 2018; 2018-03-20 - 2018-03-21
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38 Karlsen, Odd Andre; Sôderstrôm, Sofie; Goksøyr, Siri Øfsthus; Aranguren, Libe; Lille-Langøy, Roger; Eide, Marta; Zhang, Xiaokang; Jonassen, Inge; Yadetie, Fekadu; Goksøyr, Anders.
The nuclear receptor complement of Atlantic cod (Gadus morhua) as potential targets for endocrine disrupting compounds. NETS 2018; 2018-03-14 - 2018-03-16
UiB Untitled
 
39 Kleppe, Rune; Jonassen, Inge; Doskeland, Stein Ove; Selheim, Frode.
Mathematical modelling of nitric oxide/cyclic GMP/cyclic AMP signalling in platelets. International Journal of Molecular Sciences 2018 ;Volum 19.(2) s. 1-21
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40 Kleppe, Rune; Zamanzad Ghavidel, Fatemeh; Jonassen, Inge.
Making your science FAIR with Digital Life Norway. NBS Kontaktmøte 2018; 2018-01-18 - 2018-01-21
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41 Kleppe, Rune; Zamanzad Ghavidel, Fatemeh; Jonassen, Inge.
Ongoing activities in Competence and Infrastructure Networks. Møte; 2018-02-07
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42 Kusonmano, Kanthida; Halle, Mari Kyllesø; Wik, Elisabeth; Høivik, Erling Andre; Krakstad, Camilla; Mauland, Karen Klepsland; Tangen, Ingvild Løberg; Berg, Anna; Werner, Henrica Maria Johanna; Trovik, Jone; Øyan, Anne Margrete; Kalland, Karl-Henning; Jonassen, Inge; Salvesen, Helga; Petersen, Kjell.
Identification of highly connected and differentially expressed gene subnetworks in metastasizing endometrial cancer. PLOS ONE 2018 ;Volum 13:e0206665.(11) s. 1-21
HAUKELAND UiB Untitled
 
43 Lekang, Katrine; Hadziavdic, Kenan; Skaar, Katrine Sandnes; Jonassen, Inge; Thompson, Eric; Troedsson, Christofer.
Development and testing of an 18S rRNA phylogenetic microarray for marine sediments. Journal of Microbiological Methods 2018 ;Volum 154. s. 95-106
NORCE UiB Untitled
 
44 Ray, Jessica Louise; Larsen, Aud; Troedsson, Christofer; Thompson, Eric; Lanzén, Anders; Lekang, Katrine; Allan, Bridie Jean Marie; Jonassen, Inge; Hadziavdic, Kenan; Simonelli, Paolo; Nejstgaard, Jens Christian; Dahlgren, Thomas Gunnar; De Schepper, Stijn; Sazhin, Andrey; Jakobsen, Hans Henrik; Sadatzki, Henrik; Stenevik, Erling Kåre.
Ongoing activities with eDNA as a monitoring tool in high-latitude marine ecosystems. eDNA analyses – a tool for quantitative assessments of marine ecosystems; 2018-05-01 - 2018-05-02
HAVFORSK NORCE UiB UiO Untitled
 
45 Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš; Rye, Morten Beck; Hjerde, Erik; Antony Samy, Jeevan Karloss; Fornous, Ghislain; Azab, Abdulrahman; Våge, Dag Inge; Hovig, Eivind; Willassen, Nils Peder; Drabløs, Finn; Nygård, Ståle; Petersen, Kjell; Jonassen, Inge.
Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research 2018 ;Volum 7:968. s. -
NTNU UiB UiO UiT NMBU Untitled
 
46 Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Aranguren Abadía, Libe; Eide, Marta; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre.
RNA-seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol. The Norwegian Society of Pharmacology and Toxicology (NSFT), winter meeting at Beitostølen, Norway, January 25th-28th; 2018-01-25 - 2018-01-28
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47 Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Aranguren Abadía, Libe; Eide, Marta; Blaser, Nello; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre.
RNA-seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol. NETS 2018; 2018-03-14 - 2018-03-16
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48 Yadetie, Fekadu; Zhang, Xiaokang; Hanna, Eileen Marie; Aranguren-Abadía, Libe; Eide, Marta; Blaser, Nello; Brun, Morten; Jonassen, Inge; Goksøyr, Anders; Karlsen, Odd Andre.
RNA-Seq analysis of transcriptome responses in Atlantic cod (Gadus morhua) precision-cut liver slices exposed to benzo[a]pyrene and 17α-ethynylestradiol. Aquatic Toxicology 2018 ;Volum 201. s. 174-186
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49 Zamanzad Ghavidel, Fatemeh; Petersen, Kjell; Kleppe, Rune; Jonassen, Inge.
Implementing Data Management in Digital Life Norway. Data Management for Human Genomics; 2018-09-19
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50 Zhang, Xiaokang; Eide, Marta; Karlsen, Odd Andre; Hanna, Eileen Marie; Blaser, Nello; Puntervoll, Pål; Jonassen, Inge; Goksøyr, Anders.
Modelling the chemical defensome networks --- a dynamic visualisation of the involved genes and interactions in two fish species and human. The 2nd annual conference of Digital Life Norway Research School; 2018-05-30 - 2018-06-01
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