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For å registrere i Cristin må du være vitenskapelig eller administrativt ansatt.
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2019
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| 1. | Efstathiou, Sophia; Nydal, Rune; Lægreid, Astrid; Kuiper, Martin. Scientific knowledge in the age of computation: Explicated, computable and manageable?. Theoria. An international Journal of Theory, History and Foundations of Science 2019 NTNU |
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| 2. | The Gene Ontology, Consortium; that, includes; Acencio, Marcio Luis; Lægreid, Astrid; Kuiper, Martin; among, others. The Gene Ontology Resource: 20 years and still GOing strong.. Nucleic Acids Research 2019 (gky1055) NTNU |
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| 3. | Zobolas, John; Vázquez, Miguel; Kuiper, Martin; Flobak, Åsmund. Zobolas J, Vazquez M, Kuiper M and Flobak Å. DrugLogics: An ensemble model analysis related to drug prediction performance [version 1; not peer reviewed]. F1000Research 2019, 8:113 (poster). NBS 2019; 2019-01-24 - 2019-01-27 NTNU |
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2018
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| 4. | Kuiper, Martin. In Silico Clinical Trials. Invited seminar at the ERACoSysMed meeting in Paris, June 2018; 2018-06-15 - 2018-06-15 NTNU |
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| 5. | Kuiper, Martin; Holmås, Stian. Network building in Cytoscape using the BioGateway App: benefits of hiding the SPARQL from your eyes. Invited seminar at the European Bioinformatics Institute (EBI); 2018-11-20 - 2018-11-20 NTNU |
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| 6. | Niederdorfer, Barbara; Vázquez, Miguel; Thommesen, Liv; Kuiper, Martin; Lægreid, Astrid; Flobak, Åsmund. Logical model simulations predict drug synergies across different cancer cell lines. ISMB 2018; 2018-07-06 - 2018-07-10 NTNU |
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| 7. | Nydal, Rune; Lægreid, Astrid; Kuiper, Martin; Gabrielsen, Ane Møller. Introduction. Visions for Life Science Knowledge Commons. Visions for Life Science Knowledge Commons; 2018-05-23 - 2018-05-24 NTNU |
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| 8. | Touré, Vasundra; Flobak, Åsmund; Lægreid, Astrid; Kuiper, Martin. Knowledge management and standard representation of causal statements for systems modeling.. JOBIM 2018; 2018-07-03 - 2018-07-06 NTNU |
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| 9. | Vercruysse, Steven; Kuiper, Martin. The VSM-pages: How to Easily Plant Complex Ideas into Computers. NTNU |
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2017
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| 10. | Acencio, Marcio Luis; Lægreid, Astrid; Kuiper, Martin; Thommesen, Liv; Leitner, Florian; Krallinger, Martin; Lourenço, Analia; Vázquez, Miguel; Valencia, Alfonso. NTNU DbTF Curation: current status and Mining Transcription Regulation Information from Literature. Short Research Stay at the European Bioinformatics Institute (EBI); 2017-05-08 - 2017-05-10 NTNU |
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| 11. | Acencio, Marcio Luis; Vázquez, Miguel; Kuiper, Martin; Lægreid, Astrid. DbTF-TG interactions and regulatory relationships: a survey. Curation workshop on molecular and causal interactions; 2017-12-05 - 2017-12-07 NTNU |
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| 12. | Chawla, Konika. Discovering, analysing and taking care of knowledge. Trondheim, Norway: Norwegian University of Science and Technology 2017 (ISBN 978-82-326-2316-7) 182 s. NTNU |
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| 13. | Kuiper, Martin. The logical way to tackle cancer. Systems Medicine Conference in Slovenia; 2017-06-08 - 2017-06-09 NTNU |
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2016
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| 14. | Acencio, Marcio Luis; Lægreid, Astrid; Kuiper, Martin. Causal statements for Gene Regulation & Signal Transduction: what can be done in PSI-MI. HUPO-PSI meeting 2016; 2016-04-18 - 2016-04-20 NTNU |
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| 15. | Acencio, Marcio Luis; Lægreid, Astrid; Kuiper, Martin. Knowledge Commons digitalization - curation. Crossover Seminar; 2016-04-14 - 2016-04-15 NTNU |
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| 16. | Chawla, Konika; Kuiper, Martin. Genes2GO: A web application for querying gene sets for specific GO terms. Bioinformation 2016 ;Volum 12.(3) s. 231-232 NTNU |
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| 17. | Nydal, Rune; Lægreid, Astrid; Kuiper, Martin. Curation strategeis of NTNU project. Workshop upstart crossover at EBI; 2016-04-22 - 2016-04-23 NTNU |
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| 18. | Tripathi, Sushil; Vercruysse, Steven; Chawla, Konika; Christie, Karen R.; Blake, Judith A; Huntley, Rachael P.; Orchard, Sandra; Hermjakob, Henning; Thommesen, Liv; Lægreid, Astrid; Kuiper, Martin. Gene regulation knowledge commons: community action takes care of DNA binding transcription factors. Database: The Journal of Biological Databases and Curation 2016 s. - NTNU |
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2015
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| 19. | Flobak, Åsmund; Baudot, Anaïs; Remy, Elisabeth; Thommesen, Liv; Thieffry, Denis; Kuiper, Martin; Lægreid, Astrid. Discovery of Drug Synergies in Gastric Cancer Cells Predicted by Logical Modeling. PloS Computational Biology 2015 ;Volum 11.(8) NTNU |
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| 20. | Kuiper, Martin. Keynote lecture: Taking care of knowledge to enable systems analysis. X-Meeting 2015 - 11th International Conference of th AB3C + Brazilian Symposium of Bioinformatics; 2015-11-03 - 2015-11-06 NTNU |
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| 21. | Lægreid, Astrid; Kuiper, Martin. Health and the information commons. NTNU |
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| 22. | Skancke, Jørgen; Bar, Nadav; Kuiper, Martin; Hsu, Lilian M. Sequence-Dependent Promoter Escape Efficiency Is Strongly Influenced by Bias for the Pretranslocated State during Initial Transcription. Biochemistry 2015 ;Volum 54.(28) s. 4267-4275 NTNU |
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2014
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| 23. | Blondé, Ward; Antezana, Erick; Mironov, Vladimir; Schulz, Stefan; Kuiper, Martin; De baets, Bernard. Using the relation ontology Metarel for modelling Linked Data as multi-digraphs. Semantic Web 2014 ;Volum 5.(2) s. 115-126 NTNU |
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| 24. | De Mulder, Wim; Zavareh, Zahra; Chawla, Konika; Kuiper, Martin. Experimental Verification of the Quality of Clusterings Produced by Hard Clustering Algorithms After the Removal of Unstable Data Elements. BIOTECHNO 2014, DBKDA 2014; 2014-04-20 - 2014-04-24 NTNU |
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| 25. | Flobak, Åsmund; Baudot, Anaïs; Remy, Elisabeth; Thommesen, Liv; Thieffry, Denis; Kuiper, Martin; Lægreid, Astrid. Drug synergies in a gastric cancer cell line discovered by signal transduction modeling. Virtual Physiological Human Conference 2014; 2014-09-09 - 2014-09-12 NTNU |
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| 26. | Gautam, Vinay Kumar; Czeizler, Eugen; Haddow, Pauline; Kuiper, Martin. Design of a Minimal System for Self-replication of Rectangular Patterns of DNA Tiles. Lecture Notes in Computer Science 2014 ;Volum 8890. s. 119-133 NTNU |
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| 27. | Kuiper, Martin. Augmenting the human brain. Knowledge management and the futures of our society, a Virtual Physiological Human 2014 Satellite Workshop; 2014-09-08 - 2014-09-09 NTNU |
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| 28. | Kuiper, Martin. Keynote lecture: Networks for Knowledge. IEEE International Conference Bioinformatics and Biomedicine 2014; 2014-11-02 - 2014-11-05 NTNU |
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| 29. | Kuiper, Martin; Lægreid, Astrid. The GRECO initiative: taking care of Gene Regulation knowledge. Virtual Physiological Human Conference 2014; 2014-09-09 - 2014-09-12 NTNU |
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| 30. | Kuiper, Martin; Mironov, Vladimir; Venkatesan, Aravind; Tripathi, Sushil; Blondé, Ward; Sanz de Galdeano, Alejandro; Lægreid, Astrid. The gene expression knowledge base. Virtual Physiological Human Conference 2014; 2014-09-09 - 2014-09-12 NTNU |
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| 31. | Lægreid, Astrid; Kuiper, Martin. Å ta seg av kunnskap. NTNU |
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| 32. | Mironov, Vladimir; Kuiper, Martin; Ekseth, Ole Kristian. OrthAgogue: An agile tool for the rapid prediction of orthology relations. Bioinformatics 2014 ;Volum 30.(5) s. 734-736 NTNU |
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| 33. | Nydal, Rune; Efstathiou, Sophia; Lægreid, Astrid; Kuiper, Martin. Setting the stage: Tragedy of the knowledge commons. Knowledge management and the futures of our society, a Virtual Physiological Human 2014 Satellite Workshop; 2014-09-08 - 2014-09-09 NTNU |
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| 34. | Venkatesan, Aravind; Tripathi, Sushil; Sanz de Galdeano, Alejandro; Blondé, Ward; Lægreid, Astrid; Mironov, Vladimir; Kuiper, Martin. Finding gene regulatory network candidates using the gene expression knowledge base. BMC Bioinformatics 2014 ;Volum 15.(1) NTNU |
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2013
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| 35. | Antezana, Erick; Mironov, Vladimir; Kuiper, Martin. The emergence of Semantic Systems Biology. New Biotechnology 2013 ;Volum 30.(3) s. 286-290 NTNU |
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| 36. | Chawla, Konika; Tripathi, Sushil; Thommesen, Liv; Lægreid, Astrid; Kuiper, Martin. TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors. Bioinformatics 2013 ;Volum 29.(19) s. 2519-2520 NTNU |
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| 37. | Gautam, Vinay Kumar; Haddow, Pauline; Kuiper, Martin. Reliable Self-assembly by Self-triggered Activation of Enveloped DNA Tiles. 2nd International Conference on the Theory and Practice of Natural Computing; 2013-12-03 - 2013-12-05 NTNU |
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| 38. | Kuiper, Martin. It's all semantics for the user. LBM 2013 – International Symposium on Languages in Biology and Medicine; 2013-12-12 - 2013-12-13 NTNU |
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| 39. | Kuiper, Martin; Antezana, Erick; Mironov, Vladimir. Cell Cycle Ontology (CCO). NTNU |
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| 40. | Niehl, A; Zhang, Z.J.; Kuiper, Martin; Peck, SC; Heinlein, M. Label-Free Quantitative Proteomic Analysis of Systemic Responses to Local Wounding and Virus Infection in Arabidopsis thaliana. Journal of Proteome Research 2013 ;Volum 12.(6) s. 2491-2503 NTNU |
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| 41. | Tripathi, Sushil; Christie, KR; Balakrishnan, Ravin; Huntley, R; Hill, DP; Thommesen, Liv; Blake, JA; Kuiper, Martin; Lægreid, Astrid. Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort. Database: The Journal of Biological Databases and Curation 2013 s. - NTNU |
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| 42. | Vercruysse, Steven; Kuiper, Martin. WordVis: JavaScript and Animation to Visualize the WordNet Relational Dictionary. Advances in Intelligent Systems and Computing 2013 ;Volum 179. s. 137-145 NTNU |
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2012
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| 43. | Efstathiou, Sophia; Carusi, Annamaria; Kuiper, Martin; Lægreid, Astrid; Nydal, Rune. Research Systems for Systems Biology. European Meetings on Cybernetics and Systems Research; 2012-04-10 - 2012-04-13 NTNU |
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| 44. | Efstathiou, Sophia; Nydal, Rune; Carusi, Annamaria; Kuiper, Martin; Lægreid, Astrid. Well-constructed systems biology: Integrating socio-humanist research. European Meetings on Cybernetics and Systems Research; 2012-04-12 - 2012-04-14 NTNU |
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| 45. | Efstathiou, Sophia; Nydal, Rune; Kuiper, Martin; Lægreid, Astrid; Carusi, Annamaria. When ‘Knowledge’ Becomes Something to Manage. Society for the Study of Nanoscience and Emerging Technologies; 2012-10-23 - 2012-10-25 NTNU |
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| 46. | Hollunder, Jens; Mironov, Vladimir; Antezana, Erick; Hoehndorf, Robert; Kuiper, Martin. Profiling of Semantically Annotated Proteins. Semantic Web Applications and Tools for Life Sciences 2012; 2012-11-28 - 2012-11-30 NTNU |
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| 47. | Kuiper, Martin. The Emergence of Semantic Systems Biology. The Ethos of Integrative Research:The case of systems biology; 2012-11-26 - 2012-11-27 NTNU |
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| 48. | Kuiper, Martin; Venkatesan, Aravind; Antezana, Erick; Vercruysse, Steven; Mironov, Vladimir; Blondé, Ward. Putting Semantics in Systems Biology. META 2012 ;Volum 2012.(3) s. 22-30 NTNU |
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| 49. | Mironov, Vladimir; Seethappan, Nirmala; Blondé, Ward; Antezana, Erick; Splendiani, Andrea; Kuiper, Martin. Gauging triple stores with actual biological data. BMC Bioinformatics 2012 ;Volum 13. s. - NTNU |
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| 50. | Venkatesan, Aravind; Antezana, Erick; Blondé, Ward; Vercruysse, Steven; Mironov, Vladimir; Kuiper, Martin. Putting Semantics in Systems Biology. NTNU Bioinformatics Network Seminar 2012 Norwegian Bioinformatics Forum 2012; 2012-10-18 - 2012-10-19 NTNU |
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