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2024
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1. |
Blixhavn, Camilla Hagen; Reiten, Ingrid; Kleven, Heidi; Øvsthus, Martin; Yates, Sharon Christine; Schlegel, Ulrike; Puchades, Maja; Schmid, Oliver; Bjaalie, Jan G.; Bjerke, Ingvild Elise; Leergaard, Trygve B.. The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases. Frontiers in Neuroinformatics 2024 ;Volum 18. s. - UiO
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2023
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2. |
Bjerke, Ingvild Elise; Yates, Sharon Christine; Carey, Harry; Bjaalie, Jan G.; Leergaard, Trygve B.. Scaling up cell-counting efforts in neuroscience through semi-automated methods. iScience 2023 ;Volum 26.(9) s. - UiO
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3. |
Blixhavn, Camilla Hagen; Haug, Finn-Mogens Smejda; Kleven, Heidi; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B.. A Timm-Nissl multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia. Scientific Data 2023 ;Volum 10.(150) Suppl. 1 s. - UiO
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4. |
Gurdon, Brianna; Yates, Sharon Christine; Csucs, Gergely; Groeneboom, Nicolaas; Hadad, Niran; Telpoukhovskaia, Maria; Ouellette, Andrew; Ouellette, Tionna; O’Connell, Kristen; Singh, Surjeet; Murdy, Tom; Merchant, Erin; Bjerke, Ingvild Elise; Kleven, Heidi; Schlegel, Ulrike; Leergaard, Trygve Brauns; Puchades, Maja Amedjkouh; Bjaalie, Jan G.; Kaczorowski, Catherine. Detecting the effect of genetic diversity on brain composition in an Alzheimer's disease mouse model. bioRxiv 2023 UiO
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5. |
Kleven, Heidi; Bjerke, Ingvild Elise; Clascá, Francisco; Groenewegen, Henk J.; Bjaalie, Jan G.; Leergaard, Trygve B.. Waxholm Space atlas of the rat brain: A 3D atlas supporting data analysis and integration. Nature Methods 2023 ;Volum 20. s. 1822-1829 UiO
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6. |
Kleven, Heidi; Gillespie, Thomas; Zehl, Lyuba; Dickscheid, Timo; Bjaalie, Jan G.; Maryann E., Martone; Leergaard, Trygve B.. AtOM, an ontology model to standardize use of brain atlases in tools, workflows, and data infrastructures. Scientific Data 2023 ;Volum 10.(1) s. - UiO
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7. |
Kleven, Heidi; Reiten, Ingrid; Blixhavn, Camilla Hagen; Schlegel, Ulrike; Øvsthus, Martin; Papp, Eszter Agnes; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B.; Bjerke, Ingvild Elise. A neuroscientist’s guide to using murine brain atlases for efficient analysis and transparent reporting. Frontiers in Neuroinformatics 2023 ;Volum 17. s. - UiO
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8. |
Reiten, Ingrid; Olsen, Grete; Bjaalie, Jan G.; Witter, Menno Peter; Leergaard, Trygve B.. The efferent connections of the orbitofrontal, posterior parietal and insular cortices in the rat: FAIR tract tracing data enabled by EBRAINS. Human Brain Project Summit; 2023-03-27 - 2023-03-31 UiO NTNU
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9. |
Reiten, Ingrid; Olsen, Grethe Mari; Bjaalie, Jan G.; Witter, Menno Peter; Leergaard, Trygve B.. The efferent connections of theorbitofrontal, posterior parietal,and insular cortex of the rat brain. Scientific Data 2023 ;Volum 10.(645) s. 1-17 NTNU UiO
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2022
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10. |
Bjerke, Ingvild Elise; Cullity, E. R.; Kjelsberg, Kasper; Charan, K M; Leergaard, Trygve B.; Kim, J. H.. DOPAMAP, high-resolution images of dopamine 1 and 2 receptor expression in developing and adult mouse brains. Scientific Data 2022 ;Volum 9. s. 1-11 UiO
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11. |
Bjerke, Ingvild Elise; Cullity, Ellen Rose; Kjelsberg, Kasper; Charan, Kristel; Leergaard, Trygve B.; Kim, Jee Hyun. Map of dopamine 1- and 2-receptor positive cells in the developing mouse forebrain. FENS Forum; 2022-07-09 - 2022-07-13 UiO UiT
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12. |
Bjerke, Ingvild Elise; Imad, Jala; Clascá, Francisco; Groenewegen, Henk J.; Bjaalie, Jan G.; Leergaard, Trygve Brauns. Waxholm Space atlas of the Sprague Dawley rat brain version 4: A volumetric atlas enabling data integration and analysis. FENS Forum 2022; 2022-07-09 - 2022-07-13 UiO
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13. |
Bjerke, Ingvild Elise; Leergaard, Trygve B.; Bjaalie, Jan G.; Kim, Jee Hyun. Quantitative map of dopamine 1- and 2-receptor positive cells in the developing mouse forebrain. Society for Neuroscience 2022; 2022-11-12 - 2022-11-16 UiO
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14. |
Blixhavn, Camilla Hagen; Finn-Mogens S., Haug; Kleven, Heidi; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B.. Multiplane microscopic atlas of rat brain zincergic terminal fields and metal-containing glia stained with Timm's sulphide silver method. FENS Forum 2022; 2022-07-09 - 2022-07-13 UiO
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15. |
Kim, Jeong-Yeon; Manna, Dipankar; Etscheid, Michael; Leergaard, Trygve Brauns; Kanse, Sandip. Factor VII activating protease (FSAP) inhibits the outcome of ischemic stroke in mouse models. The FASEB Journal 2022 ;Volum 36.(10) s. - UiO
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16. |
Leergaard, Trygve B.; Bjaalie, Jan G.. Atlas-based data integration for mapping the connections and architecture of the brain. Science 2022 ;Volum 378.(6619) s. 488-492 UiO
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17. |
Leergaard, Trygve B.; Bjerke, Ingvild Elise; Bjaalie, Jan G.; Palomero-Gallagher, Nicola; Puchades, Maja; Carey, Harry; Yates, Sharon Christine. Neuroscience data integration through use of digital brain atlases. Two day course; 2022-09-15 - 2022-09-16 UiO
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18. |
Leergaard, Trygve B.; Puchades, Maja; Kleven, Heidi; Bjerke, Ingvild Elise. HBP Brain Matters webinar #12 "Rodent Brain Atlasing". Webinar; 2022-11-23 - 2022-11-23 UiO
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19. |
Blackstad, Jan Sigurd Beddari; Osen, Kirsten Kjelsberg; Leergaard, Trygve Brauns. The fibro- and cyto-architecture demarcating the border between the dentate gyrus and CA3 in sheep (Ovis aries) and domestic pig (Sus scrofa domesticus). Hippocampus 2022 ;Volum 32.(9) s. 639-659 UiO NTNU
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20. |
Mehlum, Camilla Sivesind; Mahmood, Hanan; Ellingsen, Kristoffer Glenne; Øyen, Ole Morten; Leergaard, Trygve B.; Spurkland, Anne. Self-reported anatomy skills among Norwegian physicians - Need for improved postgraduate teaching provision. European Journal of Anatomy (EJA) 2022 ;Volum 26.(4) s. 465-476 SI UNN AHUS UiO
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21. |
Puchades, Maja; Reiten, Ingrid; Destexhe, Alain; Palomero-Gallagher, Nicola; Ruikes, Thijs; Leergaard, Trygve B.; Bjaalie, Jan G.. Workshop: Towards exploration of disease mechanisms in animal models: atlases, analysis, modelling and simulation.. Worshop during internal HBP meeting 2022; 2022-10-14 - 2022-10-14 UiO
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22. |
Puchades, Maja; Yates, Sharon Christine; Groeneboom, Nicolaas; Csucs, Gergely; Darine, Dmitri Aleksandrovitsj; Carey, Harry; Leergaard, Trygve B.; Bjaalie, Jan G.. EBRAINS tools for rodent brain atlasing. FENS 2022; 2022-07-09 - 2022-07-13 UiO
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23. |
Reiten, Ingrid; Leergaard, Trygve Brauns. Digitisation, sharing and atlas registration of tract tracing histological sections. HBP Summit; 2022-10-13 - 2022-10-14 UiO
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24. |
Reiten, Ingrid; Schlegel, Ulrike; Aasebø, Ida; Davison, Andrew P.; Zehl, Lyuba; Schmid, Oliver; Dicksheid, Timo; Papp, Eszter Agnes; Leergaard, Trygve Brauns; Bjaalie, Jan G.. Share FAIR neuroscience data using the EBRAINS curation services. Norwegian Research School in Neuroscience PhD conference; 2022-09-28 - 2022-09-30 UiO
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25. |
Reiten, Ingrid; Schlegel, Ulrike; Aasebø, Ida; van Swieten, Maaike M. H.; Davison, Andrew P.; Zehl, Lyuba; Schmid, Oliver; Dickscheid, Timo; Papp, Eszter Agnes; Leergaard, Trygve B.; Bjaalie, Jan G.. Share FAIR neuroscience data using the EBRAINS curation services. NRSN PhD conference; 2022-10-28 - 2022-10-30 UiO
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26. |
Schlegel, Ulrike; Hjallar, Viktor A.; Lensjø, Kristian; Uggerud, Ida Margrethe; Bjaalie, Jan G.; Hvoslef-Eide, Martha; Leergaard, Trygve B.; Fyhn, Marianne. Mapping of parahippocampal and visual neural networks in mice: Preliminary evidence for feedback projections from perirhinal cortex to visual areas. FENS Forum 2022; 2022-07-09 - 2022-07-13 UiO
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27. |
Schlegel, Ulrike; Köhnen, Stefan; Davison, Andrew; Najafi, Peyman; Weyers, Benjamin; Gründling, Jan; Abrams, Mathew; Gillespie, Tom; Muraleedharan, Vishak; Kleven, Heidi; Leergaard, Trygve B.; Amunts, Katrin; Bjaalie, Jan G.; Dickscheid, Timo; Schmid, Oliver; Zehl, Lyuba. openMINDS - flexible metadata models for neuroscience. PhD conference of NRSN; 2022-09-28 - 2022-09-30 UiO
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28. |
Tocco, Chiara; Øvsthus, Martin; Bjaalie, Jan G.; Leergaard, Trygve B.; Studer, Michèle. The topography of corticopontine projections is controlled by postmitotic expression of the area-mapping gene Nr2f1. Development 2022 ;Volum 149.(5) s. - UiO
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29. |
Øyen, Ole Morten; Spurkland, Anne; Leergaard, Trygve B.. Bedre etterutdanning i anatomi for norske klinikere. Tidsskrift for Den norske legeforening 2022 ;Volum 142.(11) s. - UiO
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2021
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30. |
Abrams, Mathew Birdsall; Bjaalie, Jan G.; Das, Samir; Egan, Gary F.; Ghosh, Satrajit S.; Goscinski, Wojtek J.; Grethe, Jeffrey S.; Kotaleski, Jeanette Hellgren; Ho, Eric Tatt Wei; Kennedy, David N.; Lanyon, Linda; Leergaard, Trygve B.; Mayberg, Helen S.; Milanesi, Luciano; Mouček, Roman; Poline, Jean-Baptiste; Roy, Prasun K.; Strother, Stephen C.; Tang, Tong Boon; Tiesinga, Paul; Wachtler, Thomas; Wójcik, Daniel K.; Martone, Maryann E.. A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility. Neuroinformatics 2021 s. - UiO
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31. |
Abrams, Mathew Birdsall; Bjaalie, Jan G.; Das, Samir; Egan, Gary F.; Ghosh, Satrajit S.; Goscinski, Wojtek J.; Grethe, Jeffrey S.; Kotaleski, Jeanette Hellgren; Ho, Eric Tatt Wei; Kennedy, David N.; Lanyon, Linda; Leergaard, Trygve B.; Mayberg, Helen S.; Milanesi, Luciano; Mouček, Roman; Poline, Jean-Baptiste; Roy, Prasun K.; Strother, Stephen C.; Tang, Tong Boon; Tiesinga, Paul; Wachtler, Thomas; Wójcik, Daniel K.; Martone, Maryann E.. Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility (Neuroinformatics, (2021), 10.1007/s12021-020-09509-0). Neuroinformatics 2021 s. - UiO
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32. |
Leergaard, Trygve B.; Bjerke, Ingvild Elise; Palomero-Gallagher, Nicola; Witter, Menno; Dickscheid, Timo; Puchades, Maja; Yates, Sharon Christine. Neuroscience data integration through use of digital brain atlases. Two day course; 2021-09-01 - 2021-09-02 NTNU UiO
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33. |
Puchades, Maja; Dickscheid, Timo; Leergaard, Trygve B.. Hands-on Session V: Brain Atlases. EBRAINS & IBRO First Virtual Master Class on Brain Atlasing and Simulation Services; 2021-07-28 - 2021-07-29 UiO
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34. |
Puchades, Maja; Yates, Sharon Christine; Bjerke, Ingvild Elise; Groeneboom, Nicolaas; Csucs, Gergely; Leergaard, Trygve B.; Bjaalie, Jan G.. Implementing the QUINT workflow for spatial quantitative analysis of labelling in mice and rats. Human brain project Summit 2021; 2021-10-12 - 2021-10-15 UiO
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35. |
Reiten, Ingrid; Schlegel, Ulrike; Aasebø, Ida; Zehl, Lyuba; Blixhavn, Camilla Hagen; Davison, Andrew; Hilverling, Anna; Kvello, Anne Marte Sjursen; Köhnen, Stefan; Papp, Eszter Agnes; Schmid, Oliver; van Swieten, Maaike M. H.; Weyers, Benjamin; Zafarnia, Sara; Dicksheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G.. Data sharing via EBRAINS: why and how. HBP Summit; 2021-10-12 - 2021-10-15 UiO
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36. |
Schlegel, Ulrike; Köhnen, Stefan; Davison, Andrew P.; Najafi, Peyman; Weyers, Benjamin; Gründling, Jan; Abrams, Mathew; Gillespie, Tom; Muraleedharan, Vishak; Kleven, Heidi; Aasebø, Ida; Leergaard, Trygve B.; Amunts, Katrin; Bjaalie, Jan G.; Dickscheid, Timo; Schmid, Oliver; Zehl, Lyuba. openMINDS - flexible metadata models for neuroscience. Human Brain Project Summit 2021; 2021-10-12 - 2021-10-15 UiO
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37. |
Syverstad, Gry-Helen Enger; Melbye, Christoffer; Puchades, Maja; Leung, Siu Yi Doreen; Jacobsen, Øyvind; Shreyas, Rao; Ottersen, Ole Petter; Leergaard, Trygve B.; Torp, Reidun. Cerebral Amyloid Angiopathy in a Mouse Model of Alzheimer’s Disease Associates with Upregulated Angiopoietin and Downregulated Hypoxia-Inducible Factor. Journal of Alzheimer's Disease 2021 ;Volum 83.(4) s. 1651-1663 UiO
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2020
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38. |
Allegra Mascaro, A. L.; Falotico, E.; Petkosi, S.; Pasquini, M.; Vannucci, L.; Tort-Colet, N.; Conti, E.; Resta, F.; Spalletti, C.; Ramalingasetty, S. T.; von Arnim, A.; Formento, E.; Angelidis, E.; Blixhavn, Camilla Hagen; Leergaard, Trygve B.; Caleo, M.; Destexhe, A.; Ijspeert, A.; Micera, S.; Laschi, C.; Jirsa, V.; Gewaltig, M-O.; Pavone, F. S.. Experimental and Computational Study on Motor Control and Recovery After Stroke: Toward a Constructive Loop Between Experimental and Virtual Embodied Neuroscience. Frontiers in Systems Neuroscience 2020 ;Volum 14. UiO
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39. |
Bjerke, Ingvild Elise; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B.. Database of literature derived cellular measurements from the murine basal ganglia. Scientific Data 2020 ;Volum 7. s. - UiO
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40. |
Bjerke, Ingvild Elise; Yates, Sharon Christine; Laja, Arthur; Witter, Menno; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B.. Densities and numbers of calbindin and parvalbumin positive neurons across the rat and mouse brain. iScience 2020 ;Volum 24:101906.(1) s. 1-52 UiO NTNU
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41. |
Reiten, Ingrid; Schlegel, Ulrike; Aasebø, Ida Elisabeth Jørgensen; Blixhavn, Camilla Hagen; Zehl, Lyuba; Kjelsberg, Kasper; Schmid, Oliver; Puchades, Maja; Weyers, Benjamin; Davison, Andrew P.; Dicksheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G.. Neuroscience community-gains from data sharing through the EBRAINS infrastructure. FENS 2020 Virtual Forum; 2020-06-11 - 2020-06-15 UiO
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42. |
Reiten, Ingrid; Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Aasebø, Ida Elisabeth Jørgensen; Yates, Sharon Christine; Kleven, Heidi; Øvsthus, Martin; Bjerke, Ingvild Elise; Puchades, Maja; Leergaard, Trygve B.; Bjaalie, Jan G.. Data sharing through the online EBRAINS platform: a new service for brain research. 4th HBP Student Conference on Interdisciplinary Brain Research; 2020-01-21 - 2020-01-22 UiO
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43. |
Schlegel, Ulrike; Reiten, Ingrid; Aasebø, Ida Elisabeth Jørgensen; Blixhavn, Camilla Hagen; Zehl, Lyuba; Kjelsberg, Kasper; Schmid, Oliver; Puchades, Maja; Weyers, Benjamin; Davison, Andrew P.; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G.. EBRAINS data sharing: benefits and workflow. FENS 2020 Virtual Forum; 2020-06-11 - 2020-06-15 UiO
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44. |
Yates, Sharon Christine; Groeneboom, Nicolaas; Csucs, Gergely; Leergaard, Trygve B.; Kreshuk, Anna; Kutra, Dominik; Puchades, Maja; Bjaalie, Jan G.. New functionalities i the QUINT workflow for brain atlas based image analysis. Human brain project Summit 2020; 2020-02-03 - 2020-02-06 UiO
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2019
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45. |
Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Schlegel, Ulrike; Oliver, Schmid; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G.. EBRAINS fair data service: A novel infrastructure for making neuroscience data findable, accessible, interoperable, and reuseable. Sfn 2019; 2019-10-19 - 2019-10-24 UiO
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46. |
Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Zehl, Lyuba; Bjerke, Ingvild Elise; Schmid, Oliver; Øvsthus, Martin; Aasebø, Ida Elisabeth Jørgensen; Yates, Sharon Christine; Schlegel, Ulrike; Legouée, Elodie; Abrams, Mathew; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G.. Neuroinformatics platform for making neuroscience data Findable, Accessible, Interoperable, and Reuseable. INCF Conference 2019; 2019-08-31 - 2019-09-02 UiO
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47. |
Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Zarfarnia, Sara; Köhnen, Stefan; Hilverling, Anna; Kleven, Heidi; Bjerke, Ingvild Elise; Schmid, Oliver; Øvsthus, Martin; Yates, Sharon Christine; Schlegel, Ulrike; Legouée, Elodie; Abrams, Mathew; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G.. Resources for making neuroscience data FAIR. The Human Brain Project invites researchers to share, find, and use data via the new EBRAINS infrastructure. Nordic neuroscience 2019; 2019-06-12 - 2019-06-12 UiO
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48. |
Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Kleven, Heidi; Schlegel, Ulrike; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B.. Find and explore rodent brain data using 3D atlases in the new EBRAINS infrastructure. Neuroscience 2019; 2019-10-19 - 2019-10-23 UiO
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49. |
Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Kleven, Heidi; Schlegel, Ulrike; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B.. Infrastructure and workflow for integrating and navigating multi-scale and multi-modal murine neuroscience data using 3D digital brain reference atlases. Neuroinformatics 2019; 2019-09-01 - 2019-09-02 UiO
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50. |
Lillehaug, Sveinung; Yetman, Michael J.; Puchades, Maja; Checinska, Martyna; Kleven, Heidi; Jankowsky, Joanna L.; Bjaalie, Jan G.; Leergaard, Trygve B.. Data Descriptor: Brain-wide distribution of reporter expression in five transgenic tetracyclinetransactivator mouse lines. Scientific Data 2019 ;Volum 6. s. 1-15 UiO
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