Cristin

2024
1.	Zhao, Zhi; Zobolas, John; Zucknick, Manuela; Aittokallio, Tero Antero. Tutorial on survival modeling with applications to omics data. Bioinformatics 2024 ;Volum 40.(3) UiO Untitled
2023
2.	Alavi, Dena Treider; Henriksen, Hege Berg; Lauritzen, Peter Mæhre; Zucknick, Manuela; Bøhn, Siv Kjølsrud; Henriksen, Christine; Paur, Ingvild; Smeland, Sigbjørn; Blomhoff, Rune. Effect of a one-year personalized intensive dietary intervention on body composition in colorectal cancer patients: Results from a randomized controlled trial. Clinical Nutrition ESPEN 2023 ;Volum 57. s. 414-422 UiO OUS OSLOMET NMBU Untitled

3.	Brynjulvsen, Marit; Solli, Elise; Walewska, Maria; Zucknick, Manuela; Djirackor, Luna; Langmoen, Iver Arne; Mughal, Awais; Skaga, Erlend; Vik-Mo, Einar Osland; Sandberg, Cecilie. Functional and Molecular Heterogeneity in Glioma Stem Cells Derived from Multiregional Sampling. Cancers 2023 ;Volum 15.(24) s. - OUS UiO Untitled

4.	Frigessi, Arnoldo; Smajdor, Anna; Zucknick, Manuela. The Importance of Reward Functions in Machine Learning Algorithms and Why These Should be Regulated. VIROS Symposium: AI and Health Robotics; 2023-09-22 - 2023-09-22 UiO Untitled

5.	Hsieh, Ping-Han; Lopes-Ramos, Camila Miranda; Zucknick, Manuela; Sandve, Geir Kjetil Ferkingstad; Glass, Kimberly; Kuijjer, Marieke. Adjustment of spurious correlations in co-expression measurements from RNA-Sequencing data. Bioinformatics 2023 ;Volum 39.(10) s. - UiO Untitled

6.	Klevberg, Gunvor Lilleholt; Zucknick, Manuela; Jahnsen, Reidun Birgitta; Eliasson, Ann-Christin. Development of Hand Use with and Without Intensive Training Among Children with Unilateral Cerebral Palsy in Scandinavia. Developmental Neurorehabilitation 2023 ;Volum 26.(3) s. 163-171 OUS UiO Untitled

7.	Rønneberg, Leiv; Kirk, Paul D. W.; Zucknick, Manuela. Dose–response prediction for in-vitro drug combination datasets: a probabilistic approach. BMC Bioinformatics 2023 ;Volum 24. s. - UiO Untitled

8.	Schmutz, Maximilian; Zucknick, Manuela; Schlenk, Richard F.; Mertens, Daniel; Benner, Axel; Weichenhan, Dieter; Mücke, Oliver; Döhner, Konstanze; Plass, Christoph; Bullinger, Lars; Claus, Rainer. Predictive value of DNA methylation patterns in AML patients treated with an azacytidine containing induction regimen. Clinical Epigenetics 2023 ;Volum 15.(1) s. - UiO Untitled

9.	Vigeland, Maria Dehli; Flåm, Siri Tennebø; Vigeland, Magnus Dehli; Espeland, Ansgar; Zucknick, Manuela; Wigemyr, Monica; Bråten, Lars Christian Haugli; Gjefsen, Elisabeth; Zwart, John Anker Henrik; Storheim, Kjersti; Pedersen, Linda Margareth; Selmer, Kaja Kristine; Lie, Benedicte Alexandra; Gervin, Kristina. Long-Term Use of Amoxicillin Is Associated with Changes in Gene Expression and DNA Methylation in Patients with Low Back Pain and Modic Changes. Antibiotics 2023 ;Volum 12.(7) s. - UiO OUS UiB HAUKELAND OSLOMET Untitled

10.	Vilming, Bente; Dahl, Jørgen Fallås; Bentzen, Anne Gry; Ingebrigtsen, Vibeke Anett; Nilsen, Elisabeth Berge; Vistad, Ingvild; Dørum, Anne; Solheim, Olesya; Bjørge, Line; Zucknick, Manuela; Aune, Guro; Lindemann, Kristina Yvonne Kathe. Real-world data on niraparib maintenance treatment in patients with non-gBRCA mutated platinum-sensitive recurrent ovarian cancer. International Journal of Gynecological Cancer 2023 ;Volum 33.(12) s. 1898-1905 OUS NTNU UNN SUS UiO SSHF UiB HAUKELAND STO Untitled

11.	Zhao, Zhi; Banterle, Marco; Lewin, Alex; Zucknick, Manuela. Multivariate Bayesian structured variable selection for pharmacogenomic studies. The Journal of the Royal Statistical Society, Series C (Applied Statistics) 2023 ;Volum 73.(2) s. 420-443 OUS UiO Untitled
2022
12.	Andresen, Ina Jungersen; Degnes, Maren-Helene Langeland; Zucknick, Manuela; Powell, Theresa L; Jansson, Thomas; Henriksen, Tore; Roland, Marie Cecilie; Michelsen, Trond Melbye. Protein biomarkers of late-onset preeclampsia. Society of Reproductive Investigation Annual Meeting; 2022-03-16 - 2022-03-19 UiO OUS Untitled

13.	Degnes, Maren-Helene Langeland; Westerberg, AC; Andresen, Ina Jungersen; Zucknick, Manuela; Powell, Theresa L; Jansson, Thomas; Henriksen, Tore; Roland, Marie Cecilie; Michelsen, Trond Melbye. Six placenta-derived proteins as markers of placental function. Society of Reproductive Investigation Annual Meeting; 2022-03-16 - 2022-03-19 UiO OUS Untitled

14.	Degnes, Maren-Helene Langeland; Westerberg, Ane Cecilie; Zucknick, Manuela; Powell, Theresa L.; Jansson, Thomas; Henriksen, Tore; Roland, Marie Cecilie; Michelsen, Trond Melbye. Placenta-derived proteins across gestation in healthy pregnancies—a novel approach to assess placental function?. BMC Medicine 2022 ;Volum 20. s. - UiO OUS Untitled

15.	Hanes, Robert; Ayuda-Duran, Maria del Pilar; Rønneberg, Leiv; Nakken, Sigve; Hovig, Eivind; Zucknick, Manuela; Enserink, Jorrit Martijn. screenwerk: a modular tool for the design and analysis of drug combination screens. Bioinformatics 2022 ;Volum 39.(1) s. - OUS UiO Untitled

16.	Kolan, Shrikant; Li, Gaoyang; Grimolizzi, Franco; Sexton, Joseph; Kvien, Tore Kristian; Goll, Guro Løvik; Sundlisæter, Nina Beate Paulshus; Zucknick, Manuela; Lillegraven, Siri; Haavardsholm, Espen; Skålhegg, Bjørn Steen. Identification of SNPs associated with methotrexate treatment outcomes in patients with early rheumatoid arthritis. Frontiers in Pharmacology 2022 ;Volum 13. s. - UiO DIAKON Untitled

17.	Kristiansen, Oddrun; Roland, Marie Cecilie; Zucknick, Manuela; Reine, Trine M.; Kolset, Svein Olav; Henriksen, Tore; Lekva, Tove; Michelsen, Trond Melbye. Maternal body mass index and placental weight: a role for fetal insulin, maternal insulin and leptin. Journal of Endocrinological Investigation 2022 ;Volum 45. s. 2105-2121 OUS UiO Untitled

18.	Leblanc, Marissa Erin; Rueegg, Corina Silvia; Bekiroğlu, Nural; Esterhuizen, Tonya M.; Fagerland, Morten Wang; Falk, Ragnhild Sørum; Frøslie, Kathrine Frey; Graf, Erika; Heinze, Georg; Held, Ulrike; Holst, Rene; Lange, Theis; Mazumdar, Madhu; Myrberg, Ida Hed; Posch, Martin; Sergeant, Jamie; Vach, Werner; Vance, Eric; Weedon-Fekjær, Harald; Zucknick, Manuela. Statistical advising: Professional development opportunities for the biostatistician. Statistics in Medicine 2022 ;Volum 41.(5) s. - OUS UiO NMBU Untitled

19.	Madjar, Katrin; Zucknick, Manuela; Ickstadt, Katja; Rahnenführer, Jörg. Correction to: Combining heterogeneous subgroups with graph-structured variable selection priors for Cox regression (BMC Bioinformatics, (2021), 22, 1, (586), 10.1186/s12859-021-04483-z). BMC Bioinformatics 2022 ;Volum 23.(1) s. - UiO Untitled

20.	Mørk, Marianne; Hoksrud, Aasne Fenne; Søberg, Helene L.; Zucknick, Manuela; Heide, Marte; Groven, Karen Synne; Røe, Cecilie. “Psychometric properties of the Norwegian foot function index revised short form”. BMC Musculoskeletal Disorders 2022 ;Volum 23.(1) s. 1-10 OUS UiO OSLOMET Untitled

21.	Ross Raftemo, Anne Elisabeth; Jahnsen, Reidun Birgitta; Brandvik, Siri; Hollung, Sandra Julsen; Zucknick, Manuela; Andersen, Guro Lillemoen. Spasticity treatments and orthopedic surgeries in lower extremities in children with cerebral palsy – a longitudinal population based study. Combined 11th Australasian Academy of Cerebral Palsy and Developmental Medicine and the 3rd International Alliance of Academies of Childhood Disability 'Better Together' Conference 2022; 2022-03-01 - 2022-03-05 SIV SUNNAAS NTNU UiO OUS Untitled

22.	Vitelli, Valeria; Fleischer, Thomas; Ankill, Jørgen; Arjas, Elja; Frigessi, Arnoldo; Kristensen, Vessela N.; Zucknick, Manuela. Transcriptomic pan-cancer analysis using rank-based Bayesian inference. Molecular Oncology 2022 ;Volum 00.(0) s. 1-16 OUS UiO Untitled

23.	Westerberg, AC; Degnes, Maren-Helene Langeland; Andresen, Ina Jungersen; Zucknick, Manuela; Powell, Theresa L; Jansson, Thomas; Henriksen, Tore; Roland, Marie Cecilie; Michelsen, Trond Melbye. Pleiotrophin and Fatty-acid Amide Hydrolase 2 – Placenta-derived Biomarkers of Preeclampsia?. Society of Reproductive Investigation Annual Meeting; 2022-03-16 - 2022-03-19 UiO OUS Untitled

24.	Zhao, Zhi; Wang, Shixiong; Zucknick, Manuela; Aittokallio, Tero Antero. Tissue-specific identification of multi-omics features for pan-cancer drug response prediction. iScience 2022 ;Volum 25.(8) s. - OUS UiO Untitled

25.	Zhao, Zhi; Zucknick, Manuela; Aittokallio, Tero Antero. EnrichIntersect: an R package for custom set enrichment analysis and interactive visualization of intersecting sets. Bioinformatics Advances 2022 ;Volum 2.(1) s. - UiO OUS Untitled
2021
26.	Heinicke, Fatima; Zhong, Xiangfu; Flåm, Siri Tennebø; Breidenbach, Johannes; Leithaug, Magnus; Mæhlen, Marthe Thoresen; Lillegraven, Siri; Aga, Anna-Birgitte; Norli, Ellen Sauar; Mjaavatten, Maria Dahl; Haavardsholm, Espen Andre; Zucknick, Manuela; Rayner, Simon; Lie, Benedicte Alexandra. MicroRNA Expression Differences in Blood-Derived CD19+ B Cells of Methotrexate Treated Rheumatoid Arthritis Patients. Frontiers in Immunology 2021 ;Volum 12. s. - MHH OUS UiO DIAKON NIBIO Untitled

27.	Klevberg, Gunvor Lilleholt; Jahnsen, Reidun Birgitta; Elkjær, Sonja; Zucknick, Manuela. Hand use development in children with unilateral cerebral palsy. Developmental Medicine & Child Neurology 2021 ;Volum 63.(12) s. 1462-1468 UiO OUS Untitled

28.	Kristiansen, Oddrun; Zucknick, Manuela; Reine, Trine M.; Kolset, Svein Olav; Jansson, Thomas; Powell, Theresa L.; Haugen, Guttorm; Henriksen, Tore; Michelsen, Trond Melbye. Mediators linking maternal weight to birthweight and neonatal fat mass in healthy pregnancies. Journal of Clinical Endocrinology and Metabolism (JCEM) 2021 ;Volum 106.(7) s. 1977-1993 OUS UiO Untitled

29.	Madjar, Katrin; Zucknick, Manuela; Ickstadt, Katja; Rahnenführer, Jörg. Combining heterogeneous subgroups with graph-structured variable selection priors for Cox regression. BMC Bioinformatics 2021 ;Volum 22.(1) s. 1-29 UiO Untitled

30.	Rønneberg, Leiv; Cremaschi, Andrea; Hanes, Robert; Enserink, Jorrit; Zucknick, Manuela. bayesynergy: flexible Bayesian modelling of synergistic interaction effects in in vitro drug combination experiments. Briefings in Bioinformatics 2021 ;Volum 22.(6) s. 1-12 UiO OUS Untitled

31.	Schellhorn, Till; Zucknick, Manuela; Askim, Torunn; Munthe-Kaas, Ragnhild; Ihle-Hansen, Hege; Seljeseth, Yngve Müller; Knapskog, Anne Brita; Næss, Halvor; Ellekjær, Hanne; Thingstad, Pernille; Wyller, Torgeir Bruun; Saltvedt, Ingvild; Beyer, Mona Kristiansen. Pre-stroke cognitive impairment is associated with vascular imaging pathology: a prospective observational study. BMC Geriatrics 2021 ;Volum 21:362. s. 1-10 VV NTNU UiB STO HMR OUS HAUKELAND UiO Untitled

32.	Zhao, Zhi; Banterle, Marco; Bottolo, Leonardo; Richardson, Sylvia; Lewin, Alexandra; Zucknick, Manuela. BayesSUR: An R package for high-dimensional multivariate Bayesian variable and covariance selection in linear regression. Journal of Statistical Software 2021 ;Volum 100.(11) s. 1-32 UiO Untitled
2020
33.	Bragstad, Line Kildal; Hjelle, Ellen Gabrielsen; Zucknick, Manuela; Sveen, Unni; Thommessen, Bente; Bronken, Berit Arnesveen; Martinsen, Randi; Kitzmüller, Gabriele; Mangset, Margrete; Kvigne, Kari Johanne; Hilari, Katerina; Lightbody, C. Elizabeth; Kirkevold, Marit. The effects of a dialogue-based intervention to promote psychosocial well-being after stroke: a randomized controlled trial. Clinical Rehabilitation 2020 ;Volum 34.(8) s. 1056-1071 AHUS OSLOMET OUS HINN UiT UiO Untitled

34.	Epting, Daniel; Senaratne, Lokuliyanage Dona Samudita; Ott, Elisabeth; Holmgren, Asbjørn; Sumathipala, Dulika Sanjeewani; Larsen, Selma Mujezinovic; Wallmeier, Julia; Bracht, Diana; Frikstad, Kari-Anne; Crowley, Suzanne; SIKIRIC, ALMA; Barøy, Tuva; Käsmann‐Kellner, Barbara; Decker, Eva; Decker, Christian; Bachmann, Nadine; Patzke, Sebastian; Phelps, Ian G.; Katsanis, Nicholas; Giles, Rachel; Schmidts, Miriam; Zucknick, Manuela; Lienkamp, Soeren S.; Omran, Heymut; Davis, Erica E.; Doherty, Dan; Strømme, Petter; Frengen, Eirik; Bergmann, Carsten; Misceo, Doriana. Loss of CBY1 results in a ciliopathy characterized by features of Joubert syndrome.. Human Mutation 2020 s. 1-16 OUS UiO Untitled

35.	Guldvik, Ingrid Jenny; Zuber, Verena; Braadland, Peder Rustøen; Grytli, Helene Hartvedt; Ramberg, Håkon Andre; Lilleby, Wolfgang; Thiede, Bernd; Zucknick, Manuela; Saatcioglu, Fahri; Gislefoss, Randi Elin; Kvåle, Rune; George, Anne; Grönberg, Henrik; Wiklund, Fredrik; Neal, David E.; Gnanapragasam, Vincent J.; Tasken, Kristin Austlid; Mills, Ian Geoffrey. Identification and Validation of Leucine-rich alpha-2-glycoprotein 1 as a Noninvasive Biomarker for Improved Precision in Prostate Cancer Risk Stratification.. European Urology Open Science 2020 ;Volum 21. s. 51-61 UiO FHI KREFTREG HAUKELAND OUS Untitled

36.	Heinicke, Fatima; Zhong, Xiangfu; Zucknick, Karola Manuela; Breidenbach, Johannes; Sundaram, Arvind Yegambaram Meenakshi; Flåm, Siri Tennebø; Leithaug, Magnus; Dalland, Marianne; Rayner, Simon; Lie, Benedicte Alexandra; Gilfillan, Gregor. An extension to: Systematic assessment of commercially available low-input miRNA library preparation kits. RNA Biology 2020 ;Volum 17.(9) s. 1284-1292 NIBIO UiO OUS Untitled

37.	Helset, Elin; Nordøy, Ingvild; Sporsem, Hilde Margrete; Bakke, Victoria Desiree; Bugge, Jan F; Gammelsrud, Karianne Wiger; Zucknick, Karola Manuela; Lippe, Elisabeth von der. Factors increasing the risk of inappropriate vancomycin therapy in ICU patients: A prospective observational study. Acta Anaesthesiologica Scandinavica 2020 ;Volum 64.(9) s. 1295-1304 OUS UiO APOTEKSØ NLSH Untitled

38.	Joshi, Sarita; De Angelis, Paula; Zucknick, Manuela; Schjølberg, Aasa Rambæk; Andersen, Solveig Norheim; Clausen, Ole Petter Fraas. Role of the Wnt signaling pathway in keratoacanthoma. Cancer Reports 2020 ;Volum 3.(2) s. 1-11 AHUS OUS UiO Untitled

39.	Langseth, Miriam Sjåstad; Andersen, Geir Øystein; Husebye, Trygve Guttorm; Arnesen, Harald; Zucknick, Manuela; Solheim, Svein; Eritsland, Jan; Seljeflot, Ingebjørg; Opstad, Trine Baur; Helseth, Ragnhild. Neutrophil extracellular trap components and myocardial recovery in post-ischemic acute heart failure. PLOS ONE 2020 ;Volum 15:e0241333.(10) s. 1-14 UiO OUS VV Untitled

40.	Mai, The Tien; Rønneberg, Leiv; Zhao, Zhi; Zucknick, Manuela; Corander, Jukka. Learning Cancer Drug Sensitivities in Large-Scale Screens from Multi-omics Data with Local Low-Rank Structure. Lecture Notes in Computer Science (LNCS) 2020 ;Volum 12313. s. 67-79 NTNU UiO Untitled

41.	Maros, Máté E.; Capper, David; Jones, David T.; Hovestadt, Volker; von Deimling, Andreas; Pfister, Stefan M; Benner, Axel; Zucknick, Karola Manuela; Sill, Martin. Machine learning workflows to estimate class probabilities for precision cancer diagnostics on DNA methylation microarray data. Nature Protocols 2020 ;Volum 15. s. 479-512 UiO Untitled

42.	Pietka, Wojciech; Sundnes, Olav; Hammarström, Clara Louise; Zucknick, Manuela; Khnykin, Denis; Haraldsen, Guttorm. Lack of interleukin-33 and its receptor does not prevent calcipotriol-induced atopic dermatitis-like inflammation in mice. Scientific Reports 2020 ;Volum 10:6451. s. 1-8 OUS UiO Untitled

43.	Zhao, Zhi; Zucknick, Manuela. Structured penalized regression for drug sensitivity prediction. The Journal of the Royal Statistical Society, Series C (Applied Statistics) 2020 ;Volum 69.(3) s. 525-545 UiO Untitled
2019
44.	Nguyen, Chinh BKrong; Kumar, Surendra; Zucknick, Manuela; Kristensen, Vessela N.; Gjerstad, Johannes; Nilsen, Hilde Loge; Wyller, Vegard Bruun Bratholm. Associations between clinical symptoms, plasma norepinephrine and deregulated immune gene networks in subgroups of adolescent with Chronic Fatigue Syndrome. Brain, Behavior, and Immunity 2019 ;Volum 76. s. 82-96 STAMI OUS UiO AHUS Untitled

45.	Heinicke, Fatima; Zhong, Xiangfu; Zucknick, Manuela; Breidenbach, Johannes; Sundaram, Arvind Yegambaram Meenakshi; Flåm, Siri Tennebø; Leithaug, Magnus; Dalland, Marianne; Farmer, Andrew; Henderson, Jordana M.; Hussong, Melanie A.; Moll, Pamela; Nguyen, Loan; McNulty, Amanda; Shaffer, Jonathan M.; Shore, Sabrina; Yip, Hoichong Karen; Vitkovska, Jana; Rayner, Simon; Lie, Benedicte Alexandra; Gilfillan, Gregor Duncan. Systematic assessment of commercially available low-input miRNA library preparation kits. RNA Biology 2019 ;Volum 17.(1) s. 75-86 NIBIO OUS UiO Untitled

46.	Hjelle, Ellen Gabrielsen; Bragstad, Line Kildal; Kirkevold, Marit; Zucknick, Manuela; Bronken, Berit Arnesveen; Martinsen, Randi; Kvigne, Kari Johanne; Kitzmüller, Gabriele; Mangset, Margrete; Thommessen, Bente; Sveen, Unni. Effect of a dialogue-based intervention on psychosocial well-being 6 months after stroke in Norway: A randomized controlled trial. Journal of Rehabilitation Medicine 2019 ;Volum 51.(8) s. 557-565 HINN OUS OSLOMET AHUS UiO UiT Untitled

47.	Hjelle, Ellen Gabrielsen; Bragstad, Line Kildal; Kirkevold, Marit; Zucknick, Manuela; Bronken, Berit Arnesveen; Martinsen, Randi; Kvigne, Kari Johanne; Kitzmüller, Gabriele; Mangset, Margrete; Thommessen, Bente; Sveen, Unni. The effect of a psychosocial intervention on well-being 6 months after stroke – a multicentre prospective randomized controlled trial. The 13th World Congress on Brain Injury; 2019-02-13 - 2019-02-15 AHUS HVL HINN OSLOMET OUS UiO Untitled

48.	Hjelle, Ellen Gabrielsen; Bragstad, Line Kildal; Zucknick, Manuela; Kirkevold, Marit; Thommessen, Bente; Sveen, Unni. The General Health Questionnaire-28 (GHQ-28) as an outcome measurement in a randomized controlled trial in a Norwegian stroke population. BMC Psychology 2019 ;Volum 7.(18) s. - OUS OSLOMET AHUS UiO Untitled

49.	Hjelle, Ellen Gabrielsen Hjelle; Bragstad, Line Kildal; Kirkevold, Marit; Zucknick, Manuela; Bronken, Berit Arnesveen; Martinsen, Randi; Kvigne, Kari Johanne; Kitzmüller, Gabriele; Mangset, Margrete; Thommessen, Bente; Sveen, Unni. The complexities of an intervention to promote psychosocial well-being after stroke: Implications for trial outcome. European stroke congress; 2019-09-22 - 2019-09-24 AHUS HVL HINN OSLOMET OUS UiO Untitled

50.	Menden, Michael P.; Wang, Dennis; Mason, Mike J.; Szalai, Bence; Bulusu, Krishna C.; Guan, Yuanfang; Yu, Thomas; Kang, Jaewoo; Jeon, Minji; Wolfinger, Russ; Nguyen, Tin; Zaslavskiy, Mikhail; Jang, In Sock; Ghazoui, Zara; Ahsen, Mehmet Eren; Vogel, Robert; Neto, Elias Chaibub; Norman, Thea; Tang, Eric K.Y.; Garnett, Mathew J.; Di Veroli, Giovanni Y.; Fawell, Stephen; Stolovitzky, Gustavo; Zucknick, Manuela; Guinney, Justin; Dry, Jonathan R.; Saez-Rodriguez, Julio. Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen. Nature Communications 2019 ;Volum 10:2674. s. 1-17 UiO Untitled

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