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2021
1 Lunde, Tracy Munthali; Hjerde, Erik; Al-Haroni, Mohammed.
Prevalence, diversity and transferability of the Tn916-Tn1545 family ICE in oral streptococci. Journal of Oral Microbiology 2021 ;Volum 13.(1) s. 1-13
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2 Sanabria-Moreno, Adriana Maria; James Peter, Jessin Janice; Hjerde, Erik; Simonsen, Gunnar Skov; Hanssen, Anne Merethe.
Shotgun-metagenomics based prediction of antibiotic resistance and virulence determinants in Staphylococcus aureus from periprosthetic tissue on blood culture bottles. Scientific Reports 2021
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2020
3 Bösl, Korbinian; Ghavidel, Fatemeh; Tekle, Kidane M; Kleppe, Rune; Hjerde, Erik; Drabløs, Finn; Hovig, Eivind; Våge, Dag Inge; Willassen, Nils Peder; Petersen, Kjell; Jonassen, Inge.
End-to-End Data Management Toolkit for Norwegian Life Scientists. 56th Contact Meeting of the Norwegian Biochemical Society; 2020-01-23 - 2020-01-26
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4 Bösl, Korbinian; Hjerde, Erik; Figenschou, Lars; Vollan, erik axel; Willassen, Nils Peder.
Workshop in Data Management for Life Science projects. Workshop in Data Management for Life Science projects; 2020-02-21 - 2020-02-21
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5 Goll, Rasmus; Johnsen, Peter Holger; Hjerde, Erik; Diab, Joseph; Valle, Per Christian; Hilpüsch, Frank; Cavanagh, Jorunn Pauline.
Effects of fecal microbiota transplantation in subjects with irritable bowel syndrome are mirrored by changes in gut microbiome. Gut microbes 2020 ;Volum 12:e1794263.(1) s. 1-15
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6 Sanabria-Moreno, Adriana Maria; Hjerde, Erik; Johannessen, Mona; Sollid, Johanna U Ericson; Simonsen, Gunnar Skov; Hanssen, Anne Merethe.
Shotgun-Metagenomics on Positive Blood Culture Bottles Inoculated With Prosthetic Joint Tissue: A Proof of Concept Study. Frontiers in Microbiology 2020
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2019
7 Flygel, Trym Thune; Sovershaeva, Evgeniya; Classen-Weitz, Shantelle; Hjerde, Erik; Mwaikono, Kilaza S.; Odland, Jon Øyvind; Ferrand, Rashida A.; McHugh, Grace; Gutteberg, Tore Jarl; Nicol, Mark P.; Cavanagh, Jorunn Pauline; Flægstad, Trond.
Composition of Gut Microbiota of Children and Adolescents With Perinatal Human Immunodeficiency Virus Infection Taking Antiretroviral Therapy in Zimbabwe. Journal of Infectious Diseases 2019 s. 1-10
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8 Johansson Söderberg, Jenny; Grgic, Miriam; Hjerde, Erik; Haugen, Peik.
Aliivibrio wodanis as a production host: development of genetic tools for expression of cold-active enzymes. Microbial Cell Factories 2019 ;Volum 18. s. -
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9 Khider, Miriam; Hansen, Hilde; Hjerde, Erik; Johansen, Jostein a; Willassen, Nils Peder.
Exploring the transcriptome of luxI- and ΔainS mutants and the impact of N-3-oxo-hexanoyl-L- and N-3-hydroxy- decanoyl-L-homoserine lactones on biofilm formation in Aliivibrio salmonicida. PeerJ 2019 ;Volum 2019. s. -
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10 Khider, Miriam; Hjerde, Erik; Hansen, Hilde; Willassen, Nils Peder.
Differential expression profiling of ΔlitR and ΔrpoQ mutants reveals insight into QS regulation of motility, adhesion and biofilm formation in Aliivibrio salmonicida. BMC Genomics 2019 ;Volum 20. s. 1-18
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11 Le Doujet, Typhaine; De Santi, Concetta; Klemetsen, Terje; Hjerde, Erik; Willassen, Nils Peder; Haugen, Peik.
Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua). Microbiome 2019 ;Volum 7. s. -
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12 Pain, Maria; Hjerde, Erik; Klingenberg, Claus; Cavanagh, Jorunn Pauline.
Comparative Genomic Analysis of Staphylococcus haemolyticus Reveals Key to Hospital Adaptation and Pathogenicity. Frontiers in Microbiology 2019 ;Volum 10.
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13 Sanabria-Moreno, Adriana Maria; Simonsen, Gunnar Skov; Johannessen, Mona; Sollid, Johanna U Ericson; Hjerde, Erik; Hanssen, Anne Merethe.
Metagenomics on prosthetic joint tissue samples inoculated in blood culture bottles: a proof of concept study. 36th Annual meeting of the Nordic Society of Clinical Microbiology and Infectious Diseases (NSCMID); 2019-09-12 - 2019-09-15
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14 Sanabria-Moreno, Adriana Maria; Simonsen, Gunnar Skov; Sollid, Johanna U Ericson; Johannessen, Mona; Hanssen, Anne Merethe; Hjerde, Erik.
Metagenomics on prosthetic joint tissue samples inoculated in blood culture bottles. Annual IBA meeting 2019; 2019-10-04
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2018
15 Dominguez Del Angel, Victoria; Hjerde, Erik; Sterck, Lieven; Capella-Gutiérrez, Salvador; Notredame, Cederic; Vinnere Pettersson, Olga; Amselem, Joelle; Bouri, Laurent; Bocs, Stephanie; Klopp, Christophe; Gibrat, Jean-Francois; Vlasova, Anna V; Leskosek, Brane L; Soler, Lucile; Binzer-Panchal, Mahesh; Lantz, Henrik.
Ten steps to get started in Genome Assembly and Annotation. F1000 2018 ;Volum 7.
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16 Esaiassen, Eirin; Hjerde, Erik; Cavanagh, Jorunn Pauline; Pedersen, Tanja; Andresen, Jannicke Hanne; Rettedal, Siren; Støen, Ragnhild; Nakstad, Britt; Willassen, Nils Peder; Klingenberg, Claus.
Effects of Probiotic Supplementation on the Gut Microbiota and Antibiotic Resistome Development in Preterm Infants. Frontiers in pediatrics 2018 ;Volum 6.(November 2018) s. -
AHUS HAUKELAND NTNU OUS STO SUS UiO UiT UNN Untitled
 
17 Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš; Rye, Morten Beck; Hjerde, Erik; Antony Samy, Jeevan Karloss; Fornous, Ghislain; Azab, Abdulrahman; Våge, Dag Inge; Hovig, Eivind; Willassen, Nils Peder; Drabløs, Finn; Nygård, Ståle; Petersen, Kjell; Jonassen, Inge.
Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research 2018 ;Volum 7:968. s. -
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18 Vimberg, Vladimir; Cavanagh, Jorunn Pauline; Benada, Oldrich; Kofranova, Olga; Hjerde, Erik; Zieglerova, Leona; Balikova Novotna, Gabriela.
Teicoplanin resistance in Staphylococcus haemolyticus is associated with mutations in histidine kinases VraS and WalK. Diagnostic microbiology and infectious disease 2018 ;Volum 90.(3) s. 233-240
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19 Williamson, Adele Kim; Hjerde, Erik; Sarre, Aili; Leiros, Ingar; Berg, Kristel; Leiros, Hanna-Kirsti S..
Discovery and design of novel DNA ligases for biotechnology. 6th International Conference on Novel Enzymes 2018; 2018-10-09 - 2018-10-12
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2017
20 Esaiassen, Eirin; Hjerde, Erik; Cavanagh, Jorunn Pauline; Simonsen, Gunnar Skov; Klingenberg, Claus.
Bifidobacterium bacteremia: Clinical characteristics and a genomic approach to assess pathogenicity. Journal of Clinical Microbiology 2017 ;Volum 55.(7) s. 2234-2248
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21 Karlsen, Christian; Hjerde, Erik; Klemetsen, Terje; Willassen, Nils Peder.
Pan genome and CRISPR analyses of the bacterial fish pathogen Moritella viscosa. BMC Genomics 2017 ;Volum 18:313.
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22 Thode, Sunniva Katharina; Bækkedal, Cecilie; Johansson Söderberg, Jenny; Hjerde, Erik; Hansen, Hilde; Haugen, Peik.
Construction of a fur null mutant and RNA-sequencing provide deeper global understanding of the Aliivibrio salmonicida Fur regulon. PeerJ 2017 s. 1-24
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23 Williamson, Adele Kim; Hjerde, Erik; Leiros, Hanna-Kirsti S.; Lian, Kjersti; Ramirez, Miguel A.; Patrick, Wayne M..
Beyond T4: discovery and design of DNA ligases for use in biotechnological applications. Cryo-EM Symposium; 2017-07-06 - 2017-07-07
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2016
24 Esaiassen, Eirin; Cavanagh, Pauline; Hjerde, Erik; Simonsen, Gunnar Skov; Støen, Ragnhild; Klingenberg, Claus.
Bifidobacterium longum subspecies infantis bacteremia in 3 extremely preterm infants receiving probiotics. Emerging Infectious Diseases 2016 ;Volum 22.(9) s. 1664-1666
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25 Williamson, Adele Kim; De Santi, Concetta; Altermark, Bjørn; Karlsen, Christian; Hjerde, Erik.
Complete genome sequence of Halomonas sp. R5-57. Standards in Genomic Sciences 2016 ;Volum 11:62. s. 1-9
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26 Williamson, Adele Kim; Hjerde, Erik; Kahlke, Tim.
Analysis of the distribution and evolution of the ATP-dependent DNA ligases of bacteria delineates a distinct phylogenetic group 'Lig E'. Molecular Microbiology 2016 ;Volum 99.(2) s. 274-290
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27 Williamson, Adele Kim; Kahlke, Tim; Hjerde, Erik; Leiros, Hanna-Kirsti S..
Structural and Bioinformatic Studies of the ‘Lig E’Group of Bacterial ATP-Dependent DNA Ligases. The 52nd NBS contact meeting; 2016-01-21 - 2016-01-24
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28 Williamson, Adele Kim; Leiros, Hanna-Kirsti S.; Hjerde, Erik; Lian, Kjersti; Ramirez, Miguel A.; Patrick, Wayne M..
Beyond T4: discovery and design of DNA ligases for use in biotechnological applications. EMBO Conference Series: The biochemistry and chemistry of biocatalysis: From understanding to design; 2016-06-12 - 2016-06-15
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2015
29 Hjerde, Erik; Karlsen, Christian; Sørum, Henning; Parkhill, Julian; Willassen, Nils Peder; Thomson, Nicholas R..
Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis. BMC Genomics 2015 ;Volum 16.(447) s. 1-13
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30 Holm, Kåre Olav; Nilsson, Kristina; Hjerde, Erik; Willassen, Nils Peder; Milton, Debra L.
Complete genome sequence of Vibrio anguillarum strain NB10, a virulent isolate from the Gulf of Bothnia. Standards in Genomic Sciences 2015 ;Volum 10.(60) s. -
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31 Kashulin, Alexander; Sørum, Henning; Hjerde, Erik; Willassen, Nils Peder.
IS elements in Aliivibrio salmonicida LFI1238: Occurrence, variability and impact on adaptability. Gene 2015 ;Volum 554.(1) s. 40-49
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2014
32 Bjerga, Gro Elin Kjæreng; Hjerde, Erik; De Santi, Concetta; Williamson, Adele Kim; Smalås, Arne O.; Willassen, Nils Peder; Altermark, Bjørn.
High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway. Standards in Genomic Sciences 2014 ;Volum 9.(3)
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33 Cavanagh, Jorunn Pauline; Hjerde, Erik; Holden, Matthew T.G.; Kahlke, Tim; Klingenberg, Claus; Flægstad, Trond; Parkhill, J; Bentley, Stephen D; Sollid, Johanna U Ericson.
Whole-genome sequencing reveals clonal expansion of multiresistant Staphylococcus heamolyticus in European hopsitals. Journal of Antimicrobial Chemotherapy 2014 ;Volum 69.(11) s. 2920-2927
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2013
34 Bjørkeng, Eva katrin; Hjerde, Erik; Pedersen, Torunn; Sundsfjord, Arnfinn; Hegstad, Kristin.
ICESluvan, a 94-Kilobase Mosaic Integrative Conjugative Element Conferring Interspecies Transfer of VanB-Type Glycopeptide Resistance, a Novel Bacitracin Resistance Locus, and a ToxinAntitoxin Stabilization System. Journal of Bacteriology 2013 ;Volum 195.(23) s. 5381-5390
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35 Hjerde, Erik; Pierechod, Marcin Miroslaw; Williamson, Adele Kim; Bjerga, Gro Elin Kjæreng; Willassen, Nils Peder; Smalås, Arne O.; Altermark, Bjørn.
Draft Genome Sequence of the Actinomycete Rhodococcus sp. Strain AW25M09, Isolated from the Hadsel Fjord, Northern Norway. Microbiology Resource Announcements (MRA) 2013 ;Volum 1.(2)
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36 Pedersen, hege lynum; Altermark, Bjørn; Hjerde, Erik; Williamson, Adele Kim; Pierechod, Marcin Miroslaw; Bjerga, Gro Elin Kjæreng; De Santi, Concetta; Willassen, Nils Peder; Smalås, Arne O..
Genome Sequencing of Bacteria Isolated from the Arctic Marine Environment. The 6th international BIOPROSP Conference; 2013-02-20 - 2013-02-22
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2012
37 Ahmad, Rafi; Hansen, Geir Åsmund; Hansen, Hilde; Hjerde, Erik; Pedersen, hege lynum; Paulsen, steinar; Nyrud, May Liss Julianne; Strauss, Anja; Willassen, Nils Peder; Haugen, Peik.
Prediction, microarray and northern blot analyses identify new intergenic small RNAs in aliivibrio salmonicida. Journal of Molecular Microbiology and Biotechnology 2012 ;Volum 22.(6) s. 352-360
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38 Bjornsdottir, Bryndis; Hjerde, Erik; Bragason, Birkir Th.; Gudmundsdottir, Thorunn; Willassen, Nils Peder; Gudmundsdottir, Bjarnheidur.
Identification of type VI secretion systems in Moritella viscosa. Veterinary Microbiology 2012 ;Volum 158.(3-4) s. 436-442
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39 Hansen, Geir Åsmund; Ahmad, Rafi; Hjerde, erik; Fenton, Christopher Graham; Willassen, Nils Peder; Haugen, Peik.
Expression profiling reveals Spot 42 small RNA as a key regulator in the central metabolism of Aliivibrio salmonicida. BMC Genomics 2012 ;Volum 13. s. -
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40 Kahlke, Tim; Goesmann, Alexander; Hjerde, Erik; Willassen, Nils Peder; Haugen, Peik.
Unique core genomes of the bacterial family vibrionaceae: insights into niche adaptation and speciation. BMC Genomics 2012 ;Volum 13. s. -
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41 Lindell, Kristoffer; Fahlgren, Anna; Hjerde, Erik; Willassen, Nils Peder; Fällman, Maria; Milton, Debra L.
Lipopolysaccharide O-Antigen Prevents Phagocytosis of Vibrio anguillarum by Rainbow Trout (Oncorhynchus mykiss) Skin Epithelial Cells. PLOS ONE 2012 ;Volum 7.(5) s. -
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2011
42 Weber, Barbara; Lindell, Kristoffer; El Qaidi, Samir; Hjerde, erik; Willassen, Nils P; Milton, Debra L.
The phosphotransferase VanU represses expression of four qrr genes antagonizing VanO-mediated quorum-sensing regulation in Vibrio anguillarum. Microbiology (Reading) 2011 ;Volum 157. s. 3324-3339
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2010
43 Pedersen, hege lynum; Hjerde, erik; Paulsen, steinar; Hansen, Hilde; Olsen, Lotte; Thode, Sunniva Katharina; Dos Santos, Marcos Tadeu; Paulssen, Ruth H; Willassen, Nils P; Haugen, Peik.
Global responses of Aliivibrio salmonicida to hydrogen peroxide as revealed by microarray analysis. Marine Genomics 2010 ;Volum 3. s. 193-200
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2009
44 Ahmad, Rafi; Hjerde, erik; Hansen, Geir Åsmund; Haugen, Peik; Willassen, Nils Peder.
Prediction and Experimental Testing of Ferric Uptake Regulator Regulons in Vibrios. Journal of Molecular Microbiology and Biotechnology 2009 ;Volum 16.(3-4) s. 159-168
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2008
45 Ahmad, Rafi; Hjerde, erik; Hansen, Geir Åsmund; Haugen, Peik; Willassen, Nils Peder.
Prediction and Experimental Testing of Ferric Uptake Regulator Regulons in Vibrios. Journal of Molecular Microbiology and Biotechnology 2008 s. -
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46 Hjerde, erik; Lorentzen, marit sjo; Holden, MT; Seeger, K; Paulsen, steinar; Bason, N; Churcher, C; Harris, D; Norbertczak, H; Quail, MA; Sanders, S; Thurston, S; Parkhill, J; Willassen, Nils Peder; Thomson, NR.
The Genome Sequence Of The Fish Pathogen Aliivibrio salmonicida Strain LFI1238 shows extensive evidence of gene decay. BMC Genomics 2008 ;Volum 9. s. 616-
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2007
47 Hjerde, erik.
The Complete Genome Sequence Of The Fish Pathogen Vibrio salmonicida. Tromsø: Universitetet i Tromsø 2007 212 s.
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48 Thorvaldsen, Steinar; Hjerde, Erik; Fenton, Christopher Graham; Willassen, Nils Peder.
Molecular characterization of cold adaptation based on ortholog protein sequences from Vibrionaceae species. Extremophiles 2007 ;Volum 11.(5) s. 719-732
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2005
49 Lorentzen, marit sjo; Hjerde, erik; Fenton, Chris; Willassen, Nils Peder.
Sequencing and annotation of two cryptic plasmids from the fish pathogen Vibrio salmonicida. The Norwegian Biochemical Society 41st Contact meeting; 2005-01-13 - 2005-01-16
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50 Hjerde, Erik; Dahl, Svein G.; Sylte, Ingebrigt.
Atypical and typical antipsychotic drug interactions with the dopamine D2 receptor. European Journal of Medicinal Chemistry 2005 ;Volum 40.
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