Cristin

2021
1.	Lunde, Tracy Munthali; Hjerde, Erik; Al-Haroni, Mohammed. Prevalence, diversity and transferability of the Tn916-Tn1545 family ICE in oral streptococci. Journal of Oral Microbiology 2021 ;Volum 13.(1) s. 1-13 UiT Untitled

2.	Sanabria-Moreno, Adriana Maria; James Peter, Jessin Janice; Hjerde, Erik; Simonsen, Gunnar Skov; Hanssen, Anne Merethe. Shotgun-metagenomics based prediction of antibiotic resistance and virulence determinants in Staphylococcus aureus from periprosthetic tissue on blood culture bottles. Scientific Reports 2021 FHI UiT UNN Untitled
2020
3.	Bösl, Korbinian; Ghavidel, Fatemeh; Tekle, Kidane M; Kleppe, Rune; Hjerde, Erik; Drabløs, Finn; Hovig, Eivind; Våge, Dag Inge; Willassen, Nils Peder; Petersen, Kjell; Jonassen, Inge. End-to-End Data Management Toolkit for Norwegian Life Scientists. 56th Contact Meeting of the Norwegian Biochemical Society; 2020-01-23 - 2020-01-26 NTNU UiB UiO UiT NMBU Untitled

4.	Bösl, Korbinian; Hjerde, Erik; Figenschou, Lars; Vollan, erik axel; Willassen, Nils Peder. Workshop in Data Management for Life Science projects. Workshop in Data Management for Life Science projects; 2020-02-21 - 2020-02-21 UiB UiT Untitled

5.	Goll, Rasmus; Johnsen, Peter Holger; Hjerde, Erik; Diab, Joseph; Valle, Per Christian; Hilpüsch, Frank; Cavanagh, Jorunn Pauline. Effects of fecal microbiota transplantation in subjects with irritable bowel syndrome are mirrored by changes in gut microbiome. Gut microbes 2020 ;Volum 12:e1794263.(1) s. 1-15 UiT UNN Untitled

6.	Sanabria-Moreno, Adriana Maria; Hjerde, Erik; Johannessen, Mona; Sollid, Johanna U Ericson; Simonsen, Gunnar Skov; Hanssen, Anne Merethe. Shotgun-Metagenomics on Positive Blood Culture Bottles Inoculated With Prosthetic Joint Tissue: A Proof of Concept Study. Frontiers in Microbiology 2020 UiT UNN Untitled
2019
7.	Flygel, Trym Thune; Sovershaeva, Evgeniya; Classen-Weitz, Shantelle; Hjerde, Erik; Mwaikono, Kilaza S.; Odland, Jon Øyvind; Ferrand, Rashida A.; McHugh, Grace; Gutteberg, Tore Jarl; Nicol, Mark P.; Cavanagh, Jorunn Pauline; Flægstad, Trond. Composition of Gut Microbiota of Children and Adolescents With Perinatal Human Immunodeficiency Virus Infection Taking Antiretroviral Therapy in Zimbabwe. Journal of Infectious Diseases 2019 s. 1-10 NTNU UiT UNN Untitled

8.	Johansson Söderberg, Jenny; Grgic, Miriam; Hjerde, Erik; Haugen, Peik. Aliivibrio wodanis as a production host: development of genetic tools for expression of cold-active enzymes. Microbial Cell Factories 2019 ;Volum 18. s. - UiT Untitled

9.	Khider, Miriam; Hansen, Hilde; Hjerde, Erik; Johansen, Jostein a; Willassen, Nils Peder. Exploring the transcriptome of luxI- and ΔainS mutants and the impact of N-3-oxo-hexanoyl-L- and N-3-hydroxy- decanoyl-L-homoserine lactones on biofilm formation in Aliivibrio salmonicida. PeerJ 2019 ;Volum 2019. s. - UiT Untitled

10.	Khider, Miriam; Hjerde, Erik; Hansen, Hilde; Willassen, Nils Peder. Differential expression profiling of ΔlitR and ΔrpoQ mutants reveals insight into QS regulation of motility, adhesion and biofilm formation in Aliivibrio salmonicida. BMC Genomics 2019 ;Volum 20. s. 1-18 UiT Untitled

11.	Le Doujet, Typhaine; De Santi, Concetta; Klemetsen, Terje; Hjerde, Erik; Willassen, Nils Peder; Haugen, Peik. Closely-related Photobacterium strains comprise the majority of bacteria in the gut of migrating Atlantic cod (Gadus morhua). Microbiome 2019 ;Volum 7. s. - UiT Untitled

12.	Pain, Maria; Hjerde, Erik; Klingenberg, Claus; Cavanagh, Jorunn Pauline. Comparative Genomic Analysis of Staphylococcus haemolyticus Reveals Key to Hospital Adaptation and Pathogenicity. Frontiers in Microbiology 2019 ;Volum 10. UiT UNN Untitled

13.	Sanabria-Moreno, Adriana Maria; Simonsen, Gunnar Skov; Johannessen, Mona; Sollid, Johanna U Ericson; Hjerde, Erik; Hanssen, Anne Merethe. Metagenomics on prosthetic joint tissue samples inoculated in blood culture bottles: a proof of concept study. 36th Annual meeting of the Nordic Society of Clinical Microbiology and Infectious Diseases (NSCMID); 2019-09-12 - 2019-09-15 UiT Untitled

14.	Sanabria-Moreno, Adriana Maria; Simonsen, Gunnar Skov; Sollid, Johanna U Ericson; Johannessen, Mona; Hanssen, Anne Merethe; Hjerde, Erik. Metagenomics on prosthetic joint tissue samples inoculated in blood culture bottles. Annual IBA meeting 2019; 2019-10-04 UiT Untitled
2018
15.	Dominguez Del Angel, Victoria; Hjerde, Erik; Sterck, Lieven; Capella-Gutiérrez, Salvador; Notredame, Cederic; Vinnere Pettersson, Olga; Amselem, Joelle; Bouri, Laurent; Bocs, Stephanie; Klopp, Christophe; Gibrat, Jean-Francois; Vlasova, Anna V; Leskosek, Brane L; Soler, Lucile; Binzer-Panchal, Mahesh; Lantz, Henrik. Ten steps to get started in Genome Assembly and Annotation. F1000 2018 ;Volum 7. UiT Untitled

16.	Esaiassen, Eirin; Hjerde, Erik; Cavanagh, Jorunn Pauline; Pedersen, Tanja; Andresen, Jannicke Hanne; Rettedal, Siren; Støen, Ragnhild; Nakstad, Britt; Willassen, Nils Peder; Klingenberg, Claus. Effects of Probiotic Supplementation on the Gut Microbiota and Antibiotic Resistome Development in Preterm Infants. Frontiers in pediatrics 2018 ;Volum 6.(November 2018) s. - AHUS HAUKELAND NTNU OUS STO SUS UiO UiT UNN Untitled

17.	Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš; Rye, Morten Beck; Hjerde, Erik; Antony Samy, Jeevan Karloss; Fornous, Ghislain; Azab, Abdulrahman; Våge, Dag Inge; Hovig, Eivind; Willassen, Nils Peder; Drabløs, Finn; Nygård, Ståle; Petersen, Kjell; Jonassen, Inge. Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research 2018 ;Volum 7:968. s. - NTNU UiB UiO UiT NMBU Untitled

18.	Vimberg, Vladimir; Cavanagh, Jorunn Pauline; Benada, Oldrich; Kofranova, Olga; Hjerde, Erik; Zieglerova, Leona; Balikova Novotna, Gabriela. Teicoplanin resistance in Staphylococcus haemolyticus is associated with mutations in histidine kinases VraS and WalK. Diagnostic microbiology and infectious disease 2018 ;Volum 90.(3) s. 233-240 UiT UNN Untitled

19.	Williamson, Adele Kim; Hjerde, Erik; Sarre, Aili; Leiros, Ingar; Berg, Kristel; Leiros, Hanna-Kirsti S.. Discovery and design of novel DNA ligases for biotechnology. 6th International Conference on Novel Enzymes 2018; 2018-10-09 - 2018-10-12 UiT Untitled
2017
20.	Esaiassen, Eirin; Hjerde, Erik; Cavanagh, Jorunn Pauline; Simonsen, Gunnar Skov; Klingenberg, Claus. Bifidobacterium bacteremia: Clinical characteristics and a genomic approach to assess pathogenicity. Journal of Clinical Microbiology 2017 ;Volum 55.(7) s. 2234-2248 UiT UNN Untitled

21.	Karlsen, Christian; Hjerde, Erik; Klemetsen, Terje; Willassen, Nils Peder. Pan genome and CRISPR analyses of the bacterial fish pathogen Moritella viscosa. BMC Genomics 2017 ;Volum 18:313. UiT NMBU Untitled

22.	Thode, Sunniva Katharina; Bækkedal, Cecilie; Johansson Söderberg, Jenny; Hjerde, Erik; Hansen, Hilde; Haugen, Peik. Construction of a fur null mutant and RNA-sequencing provide deeper global understanding of the Aliivibrio salmonicida Fur regulon. PeerJ 2017 s. 1-24 UiT Untitled

23.	Williamson, Adele Kim; Hjerde, Erik; Leiros, Hanna-Kirsti S.; Lian, Kjersti; Ramirez, Miguel A.; Patrick, Wayne M.. Beyond T4: discovery and design of DNA ligases for use in biotechnological applications. Cryo-EM Symposium; 2017-07-06 - 2017-07-07 UiT Untitled
2016
24.	Esaiassen, Eirin; Cavanagh, Pauline; Hjerde, Erik; Simonsen, Gunnar Skov; Støen, Ragnhild; Klingenberg, Claus. Bifidobacterium longum subspecies infantis bacteremia in 3 extremely preterm infants receiving probiotics. Emerging Infectious Diseases 2016 ;Volum 22.(9) s. 1664-1666 NTNU STO UiT UNN Untitled

25.	Williamson, Adele Kim; De Santi, Concetta; Altermark, Bjørn; Karlsen, Christian; Hjerde, Erik. Complete genome sequence of Halomonas sp. R5-57. Standards in Genomic Sciences 2016 ;Volum 11:62. s. 1-9 NOFIMA UiT Untitled

26.	Williamson, Adele Kim; Hjerde, Erik; Kahlke, Tim. Analysis of the distribution and evolution of the ATP-dependent DNA ligases of bacteria delineates a distinct phylogenetic group 'Lig E'. Molecular Microbiology 2016 ;Volum 99.(2) s. 274-290 UiT Untitled

27.	Williamson, Adele Kim; Kahlke, Tim; Hjerde, Erik; Leiros, Hanna-Kirsti S.. Structural and Bioinformatic Studies of the ‘Lig E’Group of Bacterial ATP-Dependent DNA Ligases. The 52nd NBS contact meeting; 2016-01-21 - 2016-01-24 UiT Untitled

28.	Williamson, Adele Kim; Leiros, Hanna-Kirsti S.; Hjerde, Erik; Lian, Kjersti; Ramirez, Miguel A.; Patrick, Wayne M.. Beyond T4: discovery and design of DNA ligases for use in biotechnological applications. EMBO Conference Series: The biochemistry and chemistry of biocatalysis: From understanding to design; 2016-06-12 - 2016-06-15 UiT Untitled
2015
29.	Hjerde, Erik; Karlsen, Christian; Sørum, Henning; Parkhill, Julian; Willassen, Nils Peder; Thomson, Nicholas R.. Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis. BMC Genomics 2015 ;Volum 16.(447) s. 1-13 UiT NMBU Untitled

30.	Holm, Kåre Olav; Nilsson, Kristina; Hjerde, Erik; Willassen, Nils Peder; Milton, Debra L. Complete genome sequence of Vibrio anguillarum strain NB10, a virulent isolate from the Gulf of Bothnia. Standards in Genomic Sciences 2015 ;Volum 10.(60) s. - UiT Untitled

31.	Kashulin, Alexander; Sørum, Henning; Hjerde, Erik; Willassen, Nils Peder. IS elements in Aliivibrio salmonicida LFI1238: Occurrence, variability and impact on adaptability. Gene 2015 ;Volum 554.(1) s. 40-49 UiT NMBU Untitled
2014
32.	Bjerga, Gro Elin Kjæreng; Hjerde, Erik; De Santi, Concetta; Williamson, Adele Kim; Smalås, Arne O.; Willassen, Nils Peder; Altermark, Bjørn. High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway. Standards in Genomic Sciences 2014 ;Volum 9.(3) UiT Untitled

33.	Cavanagh, Jorunn Pauline; Hjerde, Erik; Holden, Matthew T.G.; Kahlke, Tim; Klingenberg, Claus; Flægstad, Trond; Parkhill, J; Bentley, Stephen D; Sollid, Johanna U Ericson. Whole-genome sequencing reveals clonal expansion of multiresistant Staphylococcus heamolyticus in European hopsitals. Journal of Antimicrobial Chemotherapy 2014 ;Volum 69.(11) s. 2920-2927 UiT Untitled
2013
34.	Bjørkeng, Eva katrin; Hjerde, Erik; Pedersen, Torunn; Sundsfjord, Arnfinn; Hegstad, Kristin. ICESluvan, a 94-Kilobase Mosaic Integrative Conjugative Element Conferring Interspecies Transfer of VanB-Type Glycopeptide Resistance, a Novel Bacitracin Resistance Locus, and a ToxinAntitoxin Stabilization System. Journal of Bacteriology 2013 ;Volum 195.(23) s. 5381-5390 UiT UNN Untitled

35.	Hjerde, Erik; Pierechod, Marcin Miroslaw; Williamson, Adele Kim; Bjerga, Gro Elin Kjæreng; Willassen, Nils Peder; Smalås, Arne O.; Altermark, Bjørn. Draft Genome Sequence of the Actinomycete Rhodococcus sp. Strain AW25M09, Isolated from the Hadsel Fjord, Northern Norway. Microbiology Resource Announcements (MRA) 2013 ;Volum 1.(2) UiT Untitled

36.	Pedersen, hege lynum; Altermark, Bjørn; Hjerde, Erik; Williamson, Adele Kim; Pierechod, Marcin Miroslaw; Bjerga, Gro Elin Kjæreng; De Santi, Concetta; Willassen, Nils Peder; Smalås, Arne O.. Genome Sequencing of Bacteria Isolated from the Arctic Marine Environment. The 6th international BIOPROSP Conference; 2013-02-20 - 2013-02-22 UiT Untitled
2012
37.	Ahmad, Rafi; Hansen, Geir Åsmund; Hansen, Hilde; Hjerde, Erik; Pedersen, hege lynum; Paulsen, steinar; Nyrud, May Liss Julianne; Strauss, Anja; Willassen, Nils Peder; Haugen, Peik. Prediction, microarray and northern blot analyses identify new intergenic small RNAs in aliivibrio salmonicida. Journal of Molecular Microbiology and Biotechnology 2012 ;Volum 22.(6) s. 352-360 UiT Untitled

38.	Bjornsdottir, Bryndis; Hjerde, Erik; Bragason, Birkir Th.; Gudmundsdottir, Thorunn; Willassen, Nils Peder; Gudmundsdottir, Bjarnheidur. Identification of type VI secretion systems in Moritella viscosa. Veterinary Microbiology 2012 ;Volum 158.(3-4) s. 436-442 UiT Untitled

39.	Hansen, Geir Åsmund; Ahmad, Rafi; Hjerde, erik; Fenton, Christopher Graham; Willassen, Nils Peder; Haugen, Peik. Expression profiling reveals Spot 42 small RNA as a key regulator in the central metabolism of Aliivibrio salmonicida. BMC Genomics 2012 ;Volum 13. s. - UiT Untitled

40.	Kahlke, Tim; Goesmann, Alexander; Hjerde, Erik; Willassen, Nils Peder; Haugen, Peik. Unique core genomes of the bacterial family vibrionaceae: insights into niche adaptation and speciation. BMC Genomics 2012 ;Volum 13. s. - UiT Untitled

41.	Lindell, Kristoffer; Fahlgren, Anna; Hjerde, Erik; Willassen, Nils Peder; Fällman, Maria; Milton, Debra L. Lipopolysaccharide O-Antigen Prevents Phagocytosis of Vibrio anguillarum by Rainbow Trout (Oncorhynchus mykiss) Skin Epithelial Cells. PLOS ONE 2012 ;Volum 7.(5) s. - UiT Untitled
2011
42.	Weber, Barbara; Lindell, Kristoffer; El Qaidi, Samir; Hjerde, erik; Willassen, Nils P; Milton, Debra L. The phosphotransferase VanU represses expression of four qrr genes antagonizing VanO-mediated quorum-sensing regulation in Vibrio anguillarum. Microbiology (Reading) 2011 ;Volum 157. s. 3324-3339 UiT Untitled
2010
43.	Pedersen, hege lynum; Hjerde, erik; Paulsen, steinar; Hansen, Hilde; Olsen, Lotte; Thode, Sunniva Katharina; Dos Santos, Marcos Tadeu; Paulssen, Ruth H; Willassen, Nils P; Haugen, Peik. Global responses of Aliivibrio salmonicida to hydrogen peroxide as revealed by microarray analysis. Marine Genomics 2010 ;Volum 3. s. 193-200 UiT Untitled
2009
44.	Ahmad, Rafi; Hjerde, erik; Hansen, Geir Åsmund; Haugen, Peik; Willassen, Nils Peder. Prediction and Experimental Testing of Ferric Uptake Regulator Regulons in Vibrios. Journal of Molecular Microbiology and Biotechnology 2009 ;Volum 16.(3-4) s. 159-168 UiT Untitled
2008
45.	Ahmad, Rafi; Hjerde, erik; Hansen, Geir Åsmund; Haugen, Peik; Willassen, Nils Peder. Prediction and Experimental Testing of Ferric Uptake Regulator Regulons in Vibrios. Journal of Molecular Microbiology and Biotechnology 2008 s. - UiT Untitled

46.	Hjerde, erik; Lorentzen, marit sjo; Holden, MT; Seeger, K; Paulsen, steinar; Bason, N; Churcher, C; Harris, D; Norbertczak, H; Quail, MA; Sanders, S; Thurston, S; Parkhill, J; Willassen, Nils Peder; Thomson, NR. The Genome Sequence Of The Fish Pathogen Aliivibrio salmonicida Strain LFI1238 shows extensive evidence of gene decay. BMC Genomics 2008 ;Volum 9. s. 616- UiT Untitled
2007
47.	Hjerde, erik. The Complete Genome Sequence Of The Fish Pathogen Vibrio salmonicida. Tromsø: Universitetet i Tromsø 2007 212 s. UiT Untitled

48.	Thorvaldsen, Steinar; Hjerde, Erik; Fenton, Christopher Graham; Willassen, Nils Peder. Molecular characterization of cold adaptation based on ortholog protein sequences from Vibrionaceae species. Extremophiles 2007 ;Volum 11.(5) s. 719-732 UiT Untitled
2005
49.	Lorentzen, marit sjo; Hjerde, erik; Fenton, Chris; Willassen, Nils Peder. Sequencing and annotation of two cryptic plasmids from the fish pathogen Vibrio salmonicida. The Norwegian Biochemical Society 41st Contact meeting; 2005-01-13 - 2005-01-16 UiT Untitled

50.	Hjerde, Erik; Dahl, Svein G.; Sylte, Ingebrigt. Atypical and typical antipsychotic drug interactions with the dopamine D2 receptor. European Journal of Medicinal Chemistry 2005 ;Volum 40. UiT Untitled

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