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2019
1 Fjukstad, Bjørn; Angelvik, Nina; Grønnesby, Morten; Hauglann, maria wulff; Gunhildrud, Hedinn; Rasch, Fredrik Høisæther; Iversen, Julianne; Dalseng, Margaret; Bongo, Lars Ailo.
Teaching Electronics and Programming in Norwegian Schools Using the Air: Bit Sensor Kit. ITiCSE '19: 2019 ACM Conference on Innovation and Technology in Computer Science Education; 2019-07-15 - 2019-07-17
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2 Fjukstad, Bjørn; Angelvik, Nina; Grønnesby, Morten; Hauglann, maria wulff; Gunhildrud, Hedinn; Rasch, Fredrik Høisæther; Iversen, Julianne; Dalseng, Margaret; Bongo, Lars Ailo.
Teaching Electronics and Programming in Norwegian Schools Using the air:bit Sensor Kit. I: ITiCSE '19: Proceedings of the 2019 ACM Conference on Innovation and Technology in Computer Science Education. Association for Computing Machinery (ACM) 2019 ISBN 978-1-4503-6895-7. s. 374-380
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3 Jacome, Cristina; Ravn, Johan; Holsbø, Einar; Aviles Solis, Juan Carlos; Melbye, Hasse; Bongo, Lars Ailo.
Convolutional Neural Network for Breathing Phase Detection in Lung Sounds. Sensors 2019 ;Volum 19.(8) s. 1-10
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4 Voets, Mike; Møllersen, Kajsa; Bongo, Lars Ailo.
Reproduction study using public data of: Development and validation of a deep learning algorithm for detection of diabetic retinopathy in retinal fundus photographs. PLOS ONE 2019 ;Volum 14.(6) s. -
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2018
5 Agafonov, Aleksander; Mattila, Kimmo; Tuan, Cuong Duong; Tiede, Lars; Raknes, Inge Alexander; Bongo, Lars Ailo Aslaksen.
META-pipe cloud setup and execution. F1000 Research 2018
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6 Bongo, Lars Ailo; Raknes, Inge Alexander.
META-pipe Authorization service. F1000 2018 ;Volum 7.
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7 Fjukstad, Bjørn; Angelvik, Nina; Hauglann, maria wulff; Knutsen, Joachim Sveia; Grønnesby, Morten; Gunhildrud, Hedinn; Bongo, Lars Ailo.
Low-Cost Programmable Air Quality Sensor Kits in Science Education. I: Proceedings of the 49th ACM Technical Symposium on Computer Science Education. ACM Publications 2018 ISBN 978-1-4503-5103-4. s. 227-232
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8 Fjukstad, Bjørn; Angelvik, Nina; Hauglann, maria wulff; Knutsen, Joachim Sveia; Grønnesby, Morten; Gunhildrud, Hedinn; Bongo, Lars Ailo.
Low-Cost Programmable Air Quality Sensor Kits in Science Education. 49th ACM Technical Symposium on Computer Science Education; 2018-02-21 - 2018-02-24
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9 Tekle, Kidane M; Gundersen, Sveinung; Klepper, Kjetil; Bongo, Lars Ailo; Raknes, Inge Alexander; Li, Xiaxi; Zhang, Wei; Andreetta, Christian; Mulugeta, Teshome Dagne; Kalaš, Matúš; Rye, Morten Beck; Hjerde, Erik; Antony Samy, Jeevan Karloss; Fornous, Ghislain; Azab, Abdulrahman; Våge, Dag Inge; Hovig, Eivind; Willassen, Nils Peder; Drabløs, Finn; Nygård, Ståle; Petersen, Kjell; Jonassen, Inge.
Norwegian e-Infrastructure for Life Sciences (NeLS). F1000 Research 2018 ;Volum 7:968. s. -
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2017
10 Ravn, Johan; Solis, Juan Carlos Aviles; Grønnesby, Morten; Melbye, Hasse; Bongo, Lars Ailo.
Detection of Wheezes and Breathing Phases Using Deep Convolutional Neural Networks. I: Proceedings from the 42nd annual conference of the International Lung Sound Association, ILSA 2017. Tromsø: Institutt for samfunnsmedisin - ISM skriftserie 2017 ISBN 978-82-8378-003-1. s. 24-26
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11 Dumeaux, Vanessa; Fjukstad, Bjørn; Fjøsne, Hans Erikssønn; Frantzen, Jan Ole; Holmen, Marit Muri; Rodegerdts, Enno; Schlichting, Ellen; Børresen-Dale, Anne-Lise; Bongo, Lars Ailo; Lund, Eiliv; Hallett, Michael.
Interactions between the tumor and the blood systemic response of breast cancer patients. PLoS Computational Biology 2017 ;Volum 13.(9:e1005680) s. 1-27
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12 Fjukstad, Bjørn; Dumeaux, Vanessa; Olsen, Karina Standahl; Lund, Eiliv; Hallett, Michael; Bongo, Lars Ailo.
Building Applications For Interactive Data Exploration In Systems Biology. The 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics; 2017-08-20 - 2017-08-23
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13 Grønnesby, Morten; Solis, Juan Carlos Aviles; Holsbø, Einar; Melbye, Hasse; Bongo, Lars Ailo.
Machine Learning Based Crackle Detection. I: Proceedings from the 42nd annual conference of the International Lung Sound Association, ILSA 2017. Tromsø: Institutt for samfunnsmedisin - ISM skriftserie 2017 ISBN 978-82-8378-003-1. s. 27-27
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14 Pedersen, Edvard; Bongo, Lars Ailo.
Large-scale biological meta-database management. Future generations computer systems 2017 ;Volum 67. s. 481-489
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15 Raknes, Inge Alexander; Fjukstad, Bjørn; Bongo, Lars Ailo Aslaksen.
nsroot: Minimalist process isolation tool implemented with Linux namespaces. Norsk Informatikkonferanse 2017; 2017-11-27 - 2017-11-29
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16 Raknes, Inge Alexander; Fjukstad, Bjørn; Bongo, Lars Ailo Aslaksen.
nsroot: Minimalist process isolation tool implemented with Linux namespaces. NIK: Norsk Informatikkonferanse 2017 s. -
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17 Robertsen, Espen Mikal; Denise, Hubert; Mitchell, Alex; Finn, Robert D; Bongo, Lars Ailo Aslaksen; Willassen, Nils Peder.
ELIXIR pilot action: Marine metagenomics - towards a domain specific set of sustainable services. F1000 2017 ;Volum 6.
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18 ten Hoopen, Petra; Finn, Robert D.; Bongo, Lars Ailo; Corre, Erwan; Fosso, Bruno; Meyer, Folker; Mitchell, Alex; Pelletier, Eric; Pesole, Graziano; Santamaria, Monica; Willassen, Nils Peder; Cochrane, Guy.
The metagenomic data life-cycle: standards and best practices.. GigaScience 2017 ;Volum 6.(8) s. 1-11
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2016
19 Agafonov, Aleksander; Bongo, Lars Ailo; Raknes, Inge Alexander.
ELIXIR Compute platform. Webinar, Elixir; 2016-11-16 - 2016-11-16
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20 Bongo, Lars Ailo.
Center for Bioinformatics (SfB). Presentasjon ved IFI, UiT; 2016-02-10 - 2016-02-10
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21 Bongo, Lars Ailo.
Compute and storage requirements for META-pipe. Flash talk. ELIXIR all-hands meeting; 2016-03-08 - 2016-03-08
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22 Bongo, Lars Ailo.
Machine learning. NOTCH seminar, University of Tromsø; 2016-03-18 - 2016-03-18
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23 Bongo, Lars Ailo.
META-pipe: marine metagenomics service. ELIXIR Innovation and SME Forum: Data-driven innovation in the aquaculture and marine industries; 2016-05-13 - 2016-05-13
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24 Bongo, Lars Ailo.
NELS - Overview and recent developments. NBS contact meeting; 2016-01-23 - 2016-01-23
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25 Bongo, Lars Ailo.
Our cloud usage - and not. Uninett Faggruppe for skyteknologi; 2016-11-16 - 2016-11-16
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26 Bongo, Lars Ailo.
Virtual reality. Norstruct seminar; 2016-10-05 - 2016-10-05
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27 Bongo, Lars Ailo.
WP6: Marine metagenomics. Elixir WP4 meeting; 2016-01-26 - 2016-01-26
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28 Pedersen, Edvard; Bongo, Lars Ailo.
Big Biological Data Management. I: Resource Management for Big Data Platforms. Springer 2016 ISBN 978-3-319-44881-7. s. 265-278
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2015
29 Bongo, Lars Ailo.
Big Biological Data. Nettverksmøte Tromsø: Store Biologiske Datasett; 2015-09-08 - 2015-09-08
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30 Bongo, Lars Ailo.
Marine metagenomic infrastructure services as driver for research and industrial innovation. Elixir Compute Platforms Workshop; 2015-03-18 - 2015-03-18
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31 Bongo, Lars Ailo.
META-pipe. WP6 - Elixir-Excelerate Kick-Off Meeting; 2015-08-01 - 2015-08-01
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32 Bongo, Lars Ailo; Pedersen, Edvard; Ernstsen, Martin.
Data-intensive computing infrastructure systems for unmodified biological data analysis pipelines. Lecture Notes in Computer Science (LNCS) 2015 ;Volum 8623. s. 259-272
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33 Fjukstad, Bjørn; Olsen, Karina Standahl; Jareid, Mie; Lund, Eiliv; Bongo, Lars Ailo.
Interactive omics data exploration in epidemiological studies. The 7th Conference on Epidemiology and Registry-Based Health Research - NordicEpi 2015; 2015-09-21 - 2015-09-23
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34 Fjukstad, Bjørn; Olsen, Karina Standahl; Jareid, Mie; Lund, Eiliv; Bongo, Lars Ailo.
Interactive omics data exploration in epidemiological studies. Norsk Epidemiologi, Supplement 2015 ;Volum 25. Suppl. 1 s. 109-109
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35 Fjukstad, Bjørn; Olsen, Karina Standahl; Jareid, Mie; Lund, Eiliv; Bongo, Lars Ailo.
Kvik: three-tier data exploration tools for flexible analysis of genomic data in epidemiological studies. F1000 Research 2015 ;Volum 4:81.
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36 Kåven, Ove Henrik; Bongo, Lars Ailo.
MORTAL - Multiparadigm Optimizing Retargetable Transdisciplinary Abstraction Language. NIK 2015 - Norsk Informatikkonferanse; 2015-11-23 - 2015-11-25
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37 Kåven, Ove Henrik; Bongo, Lars Ailo.
MORTAL - Multiparadigm Optimizing Retargetable Transdisciplinary Abstraction Language. NIK: Norsk Informatikkonferanse 2015 s. -
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38 Mihajlovic, Milan; Bongo, Lars Ailo; Ciegis, Raimondas; Frasheri, Neki; Kimovski, Dragi; Kropf, Peter; Margenov, Svetozar; Neytcheva, Maya; Rauber, Thomas; Runger, Gudula; Trobec, Roman; Wuyts, Roel; Wyrzykowski, Roman; Gong, Jing.
Applications for Ultrascale Computing. Supercomputing frontiers and innovations 2015 ;Volum 2.(1) s. 19-48
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39 Pedersen, Edvard; Bongo, Lars Ailo.
Large-scale Biological Meta-database Management. : Technical report, arXiv: 1503.07759, ArXiv. Cornell University 2015 10 s.
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40 Pedersen, Edvard; Raknes, Inge Alexander; Ernstsen, Martin; Bongo, Lars Ailo.
Integrating Data-Intensive Computing Systems with Biological Data Analysis Frameworks. I: Proceedings of 23rd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP 2015). IEEE 2015 ISBN 978-1-4799-8490-9. s. 733-740
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41 Pedersen, Edvard; Raknes, Inge Alexander; Ernstsen, Martin; Bongo, Lars Ailo.
Integrating Data-Intensive Computing Systems with Biological Data Analysis Frameworks. 23rd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing; 2015-03-04 - 2015-03-06
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42 Zhu, Qian; Wong, Aaron K.; Krishnan, Arjun S.; Aure, Miriam Ragle; Tadych, Alicja; Zhang, Ran; Corney, David C.; Greene, Casey S.; Bongo, Lars Ailo; Kristensen, Vessela N.; Charikar, Moses; Li, Kai; Troyanskaya, Olga G..
Targeted exploration and analysis of large cross-platform human transcriptomic compendia. Nature Methods 2015 ;Volum 12.(3) s. 211-214
AHUS OUS UiO UiT Untitled
 
2014
43 Bongo, Lars Ailo; Pedersen, Edvard; Ernstsen, Martin.
Data-intensive computing infrastructure systems for unmodified biological data analysis pipelines. I: Proceeding of the Eleventh international meeting on Computational Intelligence methods for Bioinformatics and Biostatistics CIBB 2014. : Department of Informatics, University of Salerno 2014 ISBN 9788890643743. s. -
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44 Bongo, Lars Ailo; Pedersen, Edvard; Ernstsen, Martin.
Data-intensive computing infrastructure systems for unmodified biological data analysis pipelines. Eleventh International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics CIBB 2014; 2014-06-26 - 2014-06-28
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45 Ernstsen, Martin; Kjærner-Semb, Erik Nordtorp; Willassen, Nils Peder; Bongo, Lars Ailo.
Mario: Interactive Tuning of Biological Analysis Pipelines Using Iterative Processing. I: Euro-Par 2014: Parallel Processing Workshops. Springer 2014 ISBN 978-3-319-14324-8. s. 263-274
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46 Ernstsen, Martin; Kjærner-Semb, Erik Nordtorp; Willassen, Nils Peder; Bongo, Lars Ailo.
Mario: Interactive Tuning of Biological Analysis Pipelines Using Iterative Processing. Euro-Par 2014 Parallel Processing 20th International Conference; 2014-08-25 - 2014-08-29
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47 Fjukstad, Bjørn.
Kvik: Interactive exploration of genomic data from the NOWAC postgenome biobank. Tromsø: Masteroppgave. Institutt for informatikk (trykkeri: Tromsprodukt) Tromsø 2014 89 s.
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48 Fjukstad, Bjørn; Olsen, Karina Standahl; Jareid, Mie; Lund, Eiliv; Bongo, Lars Ailo.
Kvik: Interactive exploration of genomic data from the NOWAC postgenome biobank. Norsk Informatikkonferanse 2014; 2014-11-17 - 2014-11-19
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49 Fjukstad, Bjørn; Olsen, Karina Standahl; Jareid, Mie; Lund, Eiliv; Bongo, Lars Ailo.
Kvik: Interactive exploration of genomic data from the NOWAC postgenome biobank. NIK: Norsk Informatikkonferanse 2014 s. -
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50 Pedersen, Edvard; Willassen, Nils Peder; Bongo, Lars Ailo.
Transparent Incremental Updates for Genomics Data Analysis Pipelines. I: Euro-Par 2013: Parallel Processing Workshops. Springer 2014 ISBN 978-3-642-54419-4. s. 311-320
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