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2020
1 Khelik, Ksenia; Sandve, Geir Kjetil; Nederbragt, Alexander Johan; Rognes, Torbjørn.
NucBreak: location of structural errors in a genome assembly by using paired-end Illumina reads. BMC Bioinformatics 2020 ;Volum 21.(1) s. -
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2 Safavi, Shiva; Larouche, Ariane; Zahn, Astrid; Patenaude, Anne-Marie; Domanska, Diana Ewa; Dionne, Kiersten; Rognes, Torbjørn; Dingler, Felix; Kang, Seong-Kwi; Liu, Yan; Johnson, Nathalie; Hébert, Josée; Verdun, Ramiro E.; Rada, Cristina; Vega, Francisco; Nilsen, Hilde; Di Noia, Javier M..
The uracil-DNA glycosylase UNG protects the fitness of normal and cancer B cells expressing AID. NAR Cancer 2020 ;Volum 2.(3) s. -
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2017
3 Alsøe, Lene; Sarno, Antonio; Carracedo Huroz, Sergio; Domanska, Diana Ewa; Dingler, Felix; Lirussi, Lisa; Sengupta, Tanima; Tekin, Nuriye Basdag; Jobert, Laure; Alexandrov, Ludmil B.; Galashevskaya, Anastasia; Rada, Christina; Sandve, Geir Kjetil; Rognes, Torbjørn; Krokan, Hans Einar; Nilsen, Hilde Loge.
Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1. 6th EU-US Conference on Repair of endogenous DNA damage; 2017-09-24 - 2017-09-28
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4 Alsøe, Lene; Sarno, Antonio; Carracedo Huroz, Sergio; Domanska, Diana Ewa; Dingler, Felix; Lirussi, Lisa; Sengupta, Tanima; Tekin, Nuriye Basdag; Jobert, Laure; Alexandrov, Ludmil B.; Galashevskaya, Anastasia; Rada, Cristina; Sandve, Geir Kjetil; Rognes, Torbjørn; Krokan, Hans Einar; Nilsen, Hilde Loge.
Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1. Scientific Reports 2017 ;Volum 7.(1) s. -
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5 Khelik, Ksenia; Lagesen, Karin; Sandve, Geir Kjetil; Rognes, Torbjørn; Nederbragt, Alexander Johan.
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences. BMC Bioinformatics 2017 ;Volum 18.(1) s. 1-14
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2016
6 Kopylova, Evguenia; Navas-Molina, Jose A.; Mercier, Céline; Xu, Zhenjiang Zech; Mahé, Frédéric; He, Yan; Zhou, Hong-Wei; Rognes, Torbjørn; Caporaso, J. Gregory; Knight, Rob.
Open-source sequence clustering methods improve the state of the art. mSystems 2016 ;Volum 1.(1) s. -
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7 Namouchi, Amine; Gomez Munoz, Marta; Frye, Stephan Alfons; Moen, Line Victoria; Rognes, Torbjørn; Tonjum, Tone; Balasingham, Seetha.
The Mycobacterium tuberculosis transcriptional landscape under genotoxic stress. BMC Genomics 2016 ;Volum 17:791. s. 1-13
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8 Rognes, Torbjørn; Flouri, Tomáš; Nichols, Ben; Quince, Christopher; Mahé, Frédéric.
VSEARCH: A versatile open source tool for metagenomics. PeerJ 2016 ;Volum 4.(10) s. -
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9 Samarakoon, Pubudu Saneth; Sorte, Hanne Sørmo; Stray-Pedersen, Asbjørg; Rødningen, Olaug Kristin; Rognes, Torbjørn; Lyle, Robert.
cnvScan: A CNV screening and annotation tool to improve the clinical utility of computational CNV prediction from exome sequencing data. BMC Genomics 2016 ;Volum 17.(51) s. -
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2015
10 Dalhus, Bjørn; Backe, Paul Hoff; Lærdahl, Jon Kristen; Rowe, Alexander D.; Blicher, Pernille; Forstrøm, Rune Johansen; Rognes, Torbjørn; Bjørås, Magnar.
Helse Sør-Øst Core Facility for Structural Biology and Bioinformatics. Norsk Biokjemisk Selskap Kontaktmøte 2015; 2015-02-13 - 2015-02-17
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11 Hovig, Eivind; Rognes, Torbjørn.
Bioinformatikk - å forstå teksten. I: Mendels arv - Genetikkens æra. Gyldendal Norsk Forlag A/S 2015 ISBN 978-82-05-45818-5. s. 329-354
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12 Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban; Dunthorn, Micah.
Swarm v2: highly-scalable and high-resolution amplicon clustering. PeerJ Preprints 2015 ;Volum 3. s. -
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13 Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban; Dunthorn, Micah.
Swarm v2: highly-scalable and high-resolution amplicon clustering. PeerJ 2015 ;Volum 3. s. -
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14 Ougland, Rune; Rognes, Torbjørn; Klungland, Arne; Larsen, Elisabeth.
Non-homologous functions of the AlkB homologs. Journal of Molecular Cell Biology 2015 ;Volum 7.(6) s. 494-504
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15 Yang, Mingyi; Lin, Xiaolin; Rowe, Alexander D.; Rognes, Torbjørn; Eide, Lars; Bjørås, Magnar.
Transcriptome analysis of human OXR1 depleted cells reveals its role in regulating the p53 signaling pathway. Scientific Reports 2015 ;Volum 5.
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2014
16 Aanes, Håvard; Winata, Cecilia L.; Moen, Lars Fredrik; Østrup, Olga; Mathavan, Sinnakaruppan; Collas, Philippe; Rognes, Torbjørn; Alestrøm, Peter.
Normalization of RNA-Sequencing Data from Samples with Varying mRNA Levels. PLOS ONE 2014 ;Volum 9.(2)
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17 Andersen, Pernille Strøm; Backe, Paul Hoff; Lærdahl, Jon Kristen; Rowe, Alexander; Forstrøm, Rune Johansen; Rognes, Torbjørn; Bjørås, Magnar; Dalhus, Bjørn.
Helse Sør-Øst Core Facility for Structural Biology and Bioinformatics. NBS Contact meeting 2014; 2014-02-23 - 2014-02-26
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18 Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban; Dunthorn, Micah.
Swarm: robust and fast clustering method for amplicon-based studies. PeerJ 2014 ;Volum 2014.(1) s. -
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19 Mahé, Frédéric; Rognes, Torbjørn; Quince, Christopher; de Vargas, Colomban; Dunthorn, Micah.
Swarm: robust and fast clustering method for amplicon-based studies. PeerJ Preprints 2014 ;Volum 2. s. -
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20 Rognes, Torbjørn.
Open access from a researcher’s perspective. Open up your research and kick-start your research career - Open Access Week; 2014-10-23 - 2014-10-23
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2013
21 Backe, Paul Hoff; Simm, Roger; Lærdahl, Jon Kristen; Dalhus, Bjørn; Fagerlund, Annette; Økstad, Ole Andreas Løchen; Rognes, Torbjørn; Alseth, Ingrun; Kolstø, Anne-Brit; Bjørås, Magnar.
A new family of proteins related to the HEAT-like repeat DNA glycosylases with affinity for branched DNA structures. Journal of Structural Biology 2013 ;Volum 183.(1) s. 66-75
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22 Booth, James A.; Thomassen, Gard O Sundby; Rowe, Alexander D.; Weel-Sneve, Ragnhild; Lagesen, Karin; Kristiansen, Knut Ivan; Bjørås, Magnar; Rognes, Torbjørn; Lindvall, Jessica Margareta.
Tiling array study of MNNG treated Escherichia coli reveals a widespread transcriptional response. Scientific Reports 2013 ;Volum 3. s. -
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23 Søberg, Kristoffer; Jahnsen, Tore; Rognes, Torbjørn; Skålhegg, Bjørn Steen; Lærdahl, Jon Kristen.
Evolutionary Paths of the cAMP-Dependent Protein Kinase (PKA) Catalytic Subunits. PLOS ONE 2013 ;Volum 8.(4) s. -
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24 Weel-Sneve, Ragnhild; Kristiansen, Knut Ivan; Odsbu, Ingvild; Dalhus, Bjørn; Booth, James; Rognes, Torbjørn; Skarstad, Kirsten; Bjørås, Magnar.
Single Transmembrane Peptide DinQ Modulates Membrane-Dependent Activities. PLoS Genetics 2013 ;Volum 9.(2) s. -
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2012
25 Nederbragt, Alexander Johan; Tørresen, Ole Kristian; Khelik, Ksenia; Lagesen, Karin; Rounge, Trine Ballestad; Star, Bastiaan; Tina, Kirubakaran G.; Berg, Paul Ragnar; Rognes, Torbjørn; Jentoft, Sissel; Winer, Roger; Dewar, Ken; Jakobsen, Kjetill Sigurd.
Challenges and Opportunities for Improving the Atlantic Cod Genome Assembly and Annotation. Plant and Animal Genomes XX; 2012-01-14 - 2012-01-18
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26 Nordstrand, Line Mari; Furu, Kari; Paulsen, Jonas; Rognes, Torbjørn; Klungland, Arne.
Alkbh1 and Tzfp repress a non-repeat piRNA cluster in pachytene spermatocytes. Nucleic Acids Research 2012 ;Volum 40.(21) s. 10950-10963
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27 Ougland, Rune; Lando, David; Jonson, Ida; Dahl, John Arne; Moen, Marivi; Nordstrand, Line Mari; Rognes, Torbjørn; Lee, Jeannie T; Klungland, Arne; Kouzarides, Tony; Larsen, Elisabeth.
ALKBH1 Is a Histone H2A Dioxygenase Involved in Neural Differentiation. Stem Cells 2012 ;Volum 30.(12) s. 2672-2682
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28 Søberg, Kristoffer; Larsen, Anja C V; Diskar, Mandy; Backe, Paul Hoff; Bjørås, Magnar; Jahnsen, Tore; Lærdahl, Jon Kristen; Rognes, Torbjørn; Herberg, Friedrich W.; Skålhegg, Bjørn Steen.
Identification and Characterization of Novel Mutations in the Human Gene Encoding the Catalytic Subunit Calpha of Protein Kinase A (PKA). PLOS ONE 2012 ;Volum 7.(4) s. -
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29 Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Lagesen, Karin; Khelik, Ksenia; Rognes, Torbjørn; Jentoft, Sissel; Jakobsen, Kjetill Sigurd.
Improving the cod genome with the use of multi-platform sequencing data. Genome Informatics; 2012-09-06 - 2012-09-09
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2011
30 Lærdahl, Jon Kristen; Korvald, Hanne; Nilsen, Line; Dahl-Michelsen, Kristin; Rognes, Torbjørn; Bjørås, Magnar; Alseth, Ingrun.
Schizosaccharomyces pombe encodes a mutated AP endonuclease 1. DNA Repair 2011 ;Volum 10.(3) s. 296-305
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31 Rognes, Torbjørn.
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation. BMC Bioinformatics 2011 ;Volum 12. s. -
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32 Yang, Mingyi; Aamodt, Randi; Dalhus, Bjørn; Balasingham, Seetha; Helle, Ina Høydal; Andersen, Pernille Strøm; Tønjum, Tone; Alseth, Ingrun; Rognes, Torbjørn; Bjørås, Magnar.
The ada operon of Mycobacterium tuberculosis encodes two DNA methyltransferases for inducible repair of DNA alkylation damage. DNA Repair 2011 ;Volum 10.(6) s. 595-602
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2010
33 Ambur, Ole Herman; Alfsnes, Kristian; Hovland, Eirik; Homberset, Håvard; Lærdahl, Jon Kristen; Frye, Stephan Alfons; Rognes, Torbjørn; Støen, Mari; Tønjum, Tone.
Mechanisms of neisserial transformation and the evolution of sexual reproduction. IPNC 2010; 2010-09-11 - 2010-09-17
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34 Fensgård, Øyvind; Kassahun, Henok; Izabela Agnieszka, Bombik; Rognes, Torbjørn; Lindvall, Jessica Margareta; Nilsen, Hilde.
A Two-tiered compensatory response to loss of DNA repair modulates aging and stress response pathways. Aging 2010
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35 Møllersen, Linda; Rowe, Alexander D.; Larsen, Elisabeth; Rognes, Torbjørn; Klungland, Arne.
Continuous and Periodic Expansion of CAG Repeats in Huntington's Disease R6/1 Mice. PLoS Genetics 2010 ;Volum 6.(12)
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36 Nakken, Sigve.
Inference of molecular mechanisms from sequence patterns in human DNA variation. Unipub forlag 2010
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37 Nordstrand, Line Mari; Svärd, Jessica; Larsen, Elisabeth; Nilsen, Anja; Ougland, Rune; Furu, Kari; Lien, Guro Flor; Rognes, Torbjørn; Namekawa, Satoshi H; Lee, Jeannie T; Klungland, Arne.
Mice Lacking Alkbh1 Display Sex-Ratio Distortion and Unilateral Eye Defects. PLOS ONE 2010 ;Volum 5.(11)
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38 Thomassen, Gard O Sundby.
Design, analysis and applications of custom high-density oligonucleotide microarrays. Unipub forlag 2010 (ISBN 978-82-8072-495-3) 69 s. Series of dissertations submitted to the Faculty of Medicine, University of Oslo(965)
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39 Thomassen, Gard O Sundby; Sneve, Ragnhild; Rowe, Alexander D.; Booth, James; Lindvall, Jessica M.; Lagesen, Karin; Kristiansen, Knut Ivan; Bjørås, Magnar; Rognes, Torbjørn.
Tiling Array Analysis of UV Treated Escherichia coli Predicts Novel Differentially Expressed Small Peptides. PLOS ONE 2010 ;Volum 5.(12)
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2009
40 Ambur, Ole Herman; Davidsen, Tonje; Frye, Stephan Alfons; Balasingham, Seetha; Lagesen, Karin; Rognes, Torbjørn; Tønjum, Tone.
Genome dynamics in major bacterial pathogens. FEMS Microbiology Reviews 2009 ;Volum 33.(3) s. 453-470
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41 Fensgård, Øyvind; Lindvall, Jessica; Kassahun, Henok; Rognes, Torbjørn; Nilsen, Hilde.
Microarray analysis of BER mutants. 3rd US-EU Workshp "Systems level understanding of DNA damage responses"; 2009-03-30 - 2009-04-01
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42 Fensgård, Øyvind; Lindvall, Jessica Margareta; Kassahun, Henok; Rognes, Torbjørn; Nilsen, Hilde.
Microarray analysis of BER mutants. 2nd Nordic C. elegans Network Meeting; 2009-03-13 - 2009-03-15
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43 Nakken, Sigve; Rognes, Torbjørn; Hovig, Eivind.
The disruptive positions in human G-quadruplex motifs are less polymorphic and more conserved than their neutral counterparts. Nucleic Acids Research 2009 ;Volum 37.(17) s. 5749-5756
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44 Nakken, Sigve; Rødland, Einar Andreas; Rognes, Torbjørn; Hovig, Eivind.
Large-scale inference of the point mutational spectrum in human segmental duplications. BMC Genomics 2009 ;Volum 10. s. -
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45 Robertson, AB; Klungland, A; Rognes, T; Leiros, Ingar.
DNA Repair in Mammalian Cells. Cellular and Molecular Life Sciences (CMLS) 2009 ;Volum 66.(6) s. 981-993
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46 Skotheim, Rolf Inge; Thomassen, Gard O Sundby; Eken, Marthe; Lind, Guro Elisabeth; Micci, Francesca; Ribeiro, FR; Cerveira, N; Teixeira, MR; Heim, Sverre; Rognes, Torbjørn; Lothe, Ragnhild A.
A universal assay for detection of oncogenic fusion transcripts by oligo microarray analysis. Molecular Cancer 2009 ;Volum 8. s. -
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47 Thomassen, Gard O Sundby; Rowe, Alexander D.; Lagesen, Karin; Lindvall, Jessica Margareta; Rognes, Torbjørn.
Custom Design and Analysis of High-Density Oligonucleotide Bacterial Tiling Microarrays. PLOS ONE 2009 ;Volum 4.(6)
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2008
48 Cameron, J; Holla, OL; Laerdahl, JK; Kulseth, MA; Ranheim, T; Rognes, Torbjørn; Berge, KE; Leren, TP.
Characterization of novel mutations in the catalytic domain of the PCSK9 gene. Journal of Internal Medicine 2008 ;Volum 263.(4) s. 420-431
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49 Cameron, Jamie; Holla, Øystein Lunde; Lærdahl, Jon Kristen; Kulseth, Mari Ann; Ranheim, Trine; Rognes, Torbjørn; Berge, Knut Erik; Leren, Trond Paul.
Characterization of novel mutations in the catalytic domain of the PCSK9 gene. Journal of Internal Medicine 2008 ;Volum 263.(4) s. 420-431
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50 Lagesen, Karin.
Computational characterization of ribosomal RNAs in prokaryotes. Unipub forlag 2008 (ISBN 978-82-8072-773-2) Dissertation for the degree of Dr.Med.(709)
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