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2018
1 Hoff, Siv Nam Khang; Baalsrud, Helle Tessand; Tooming-Klunderud, Ave; Skage, Morten; Richmond, Todd; Obernosterer, Gregor; Shirzadi, Reza; Tørresen, Ole K.; Jakobsen, Kjetill Sigurd; Jentoft, Sissel.
Long‐read sequence capture of the haemoglobin gene clusters across codfish species. Molecular Ecology Resources 2018 ;Volum 19.(1) s. 245-259
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2 Lie, Kai Kristoffer; Tørresen, Ole K.; Solbakken, Monica Hongrø; Rønnestad, Ivar; Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Jentoft, Sissel; Sæle, Øystein.
Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish. BMC Genomics 2018 ;Volum 19.(186) s. 1-17
HAVFORSK UiB UiO Untitled
 
3 Tedersoo, Leho; Tooming-Klunderud, Ave; Anslan, Sten.
PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives. New Phytologist 2018 ;Volum 217.(3) s. 1370-1385
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2017
4 Tørresen, Ole Kristian; Star, Bastiaan; Jentoft, Sissel; Reinar, William Brynildsen; Grove, Harald; Miller, Jason R.; Walenz, Brian; Knight, James; Ekholm, Jenny M.; Peluso, Paul; Edvardsen, Rolf; Tooming-Klunderud, Ave; Skage, Morten; Lien, Sigbjørn; Jakobsen, Kjetill Sigurd; Nederbragt, Alexander Johan.
An improved genome assembly uncovers prolific tandem repeats in Atlantic cod. BMC Genomics 2017 ;Volum 18. s. 1-23
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2016
5 Frank, Jeremy A.; Pan, Yao; Tooming-Klunderud, Ave; Eijsink, Vincent; McHardy, Alice C; Nederbragt, Alexander Johan; Pope, Phillip.
Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. Scientific Reports 2016 ;Volum 6. s. -
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6 Lien, Sigbjørn; Koop, Ben F; Sandve, Simen Rød; Miller, Jason R.; Kent, Matthew Peter; Nome, Torfinn; Hvidsten, Torgeir Rhoden; Leong, Jong; Minkley, David R.; Zimin, Aleksey; Grammes, Fabian; Grove, Harald; Gjuvsland, Arne Bjørke; Walenz, Brian; Hermansen, Russell A.; von Schalburg, Kristian R.; Rondeau, Eric; Genova, Alex Di; Antony Samy, Jeevan Karloss; Vik, Jon Olav; Vigeland, Magnus Dehli; Caler, Lis; Grimholt, Unni; Jentoft, Sissel; Våge, Dag Inge; de Jong, Pieter J.; Moen, Thomas; Baranski, Matthew; Palti, Yniv; Smith, Douglas W.; Yorke, James A.; Nederbragt, Alexander J.; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Jiang, Xuanting; Fan, Dingding; Hu, Yan; Liberles, David A.; Vidal, Rodrigo; Iturra, Patricia; Jones, Steven J.M.; Jonassen, Inge; Maass, Alejandro; Omholt, Stig William; Davidson, William S.
The Atlantic salmon genome provides insights into rediploidization. Nature 2016 ;Volum 533.(7602) s. 200-205
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2015
7 Baldo, Laura; Riera, Joan Lluis; Tooming-Klunderud, Ave; Alba, M. Mar; Salzburger, Walter.
Gut microbiota dynamics during dietary shift in eastern African cichlid fishes. PLOS ONE 2015 ;Volum 10.(5)
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8 Stokke, Runar; Dahle, Håkon; Roalkvam, Irene; Wissuwa, Juliane; Daae, Frida Lise; Tooming-Klunderud, Ave; Thorseth, Ingunn Hindenes; Pedersen, Rolf B.; Steen, Ida Helene.
Functional interactions among filamentous Epsilonproteobacteria and Bacteroidetes in a deep-sea hydrothermal vent biofilm. Environmental Microbiology 2015 ;Volum 17.(10) s. 4063-4077
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2014
9 Brembu, Tore; Winge, Per; Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd; Bones, Atle M..
The chloroplast genome of the diatom Seminavis robusta: New features introduced through multiple mechanisms of horizontal gene transfer. Marine Genomics 2014 ;Volum 16.(1) s. 17-27
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10 de Been, Mark; Lanza, Val F.; de Toro, Maria; Scharringa, Jelle; Dohmen, Wietske; Du, Yu; Hu, Juan; Lei, Ying; Li, Ning; Tooming-Klunderud, Ave; Heederik, Dick J. J.; Fluit, Ad C; Bonten, Marc J M; Willems, Rob J.L.; de la Cruz, Fernando; van Schaik, Willem.
Dissemination of Cephalosporin Resistance Genes between Escherichia coli Strains from Farm Animals and Humans by Specific Plasmid Lineages. PLoS Genetics 2014 ;Volum 10.(12) s. -
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11 Tørresen, Ole Kristian; Jentoft, Sissel; Star, Bastiaan; Sandve, Geir Kjetil F.; Skage, Morten; Hansen, Marianne Helén Selander; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Nederbragt, Alexander Johan.
A new, high quality reference genome assembly for Atlantic cod. CEES Annual Student Conference; 2014-10-21 - 2014-10-22
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12 Xiao, Xi; Sogge, Hanne; Lagesen, Karin; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Rohrlack, Thomas.
Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment. PLOS ONE 2014 ;Volum 9.(8)
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2013
13 Sogge, Hanne; Rohrlack, Thomas; Rounge, Trine Ballestad; Sønstebø, Jørn Henrik; Tooming-Klunderud, Ave; Kristensen, Tom; Jakobsen, Kjetill Sigurd.
Gene flow, recombination, and selection in cyanobacteria: population structure of geographically related Planktothrix Freshwater Strains. Applied and Environmental Microbiology 2013 ;Volum 79.(2) s. 508-515
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14 Tooming-Klunderud, Ave; Sogge, Hanne; Rounge, Trine Ballestad; Nederbragt, Alexander Johan; Lagesen, Karin; Glöckner, Gernot; Hayes, Paul K; Rohrlack, Thomas; Jakobsen, Kjetill Sigurd.
From Green to Red: Horizontal Gene Transfer of the Phycoerythrin Gene Cluster between Planktothrix Strains. Applied and Environmental Microbiology 2013 ;Volum 79.(21) s. 6803-6812
KREFTREG NIVA UiO NMBU Untitled
 
2012
15 Nederbragt, Alexander Johan; Tørresen, Ole Kristian; Skage, Morten; Tooming-Klunderud, Ave; Hansen, Marianne Helén Selander; Jentoft, Sissel; Omholt, Stig W; Lien, Sigbjørn; Jakobsen, Kjetill Sigurd.
The long jump: Long distance mate pairs and long PacBio reads for the Salmon Genome Project. 1st International Conference on Integrative Salmonid Biology (ICISB); 2012-06-17 - 2012-06-20
NTNU UiO NMBU Untitled
 
2011
16 Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone Fredsvik; Rounge, Trine Ballestad; Paulsen, Jonas; Solbakken, Monica Hongrø; Sharma, Animesh; Wetten, Ola Frang; Lanzén, Anders; Winer, Roger; Knight, James; Vogel, Jan-Hinnerk; Aken, Bronwen; Andersen, Øivind; Lagesen, Karin; Tooming-Klunderud, Ave; Edvardsen, Rolf; Kirubakaran, G. Tina; Espelund, Mari; Nepal, Chirag; Previti, A. Christopher; Karlsen, Bård Ove; Moum, Truls; Skage, Morten; Berg, Paul Ragnar; Gjøen, Tor; Kuhl, Heiner; Thorsen, Jim; Malde, Ketil; Reinhardt, Richard; Du, Lei; Johansen, Steinar Daae; Searle, Steve; Lien, Sigbjørn; Nilsen, Frank; Jonassen, Inge; Omholt, Stig W; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd.
The genome sequence of Atlantic cod reveals a unique immune system. Nature 2011 ;Volum 477.(7363) s. 207-210
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17 Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone Fredsvik; Rounge, Trine Ballestad; Solbakken, Monica Hongrø; Paulsen, Jonas; Lagesen, Karin; Tooming-Klunderud, Ave; Tina, Kirubakaran G.; Espelund, Mari; Skage, Morten; Berg, Paul Ragnar; Omholt, Stig W; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd.
The genome of Atlantic cod reveals a unique immune system. ESEB; 2011-09-20 - 2011-09-25
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18 Andersen, Øivind; De Rosa, Maria Cristina; Pirolli, Davide; Tooming-Klunderud, Ave; Petersen, Petra E; André, Carl.
Polymorphism, selection and tandem duplication of transferrin genes in Atlantic cod (Gadus morhua) - Conserved synteny between fish monolobal and tetrapod bilobal transferrin loci. BMC Genetics 2011 ;Volum 12.(51) s. -
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19 Gabrielsen, Tove M; Minge, Marianne Aastebøl; Espelund, Mari; Tooming-Klunderud, Ave; Patil, Viswanath; Nederbragt, Alexander Johan; Otis, Christian; Turmel, Monique; Shalchian-Tabrizi, Kamran; Lemieux, Claude; Jakobsen, Kjetill Sigurd.
Genome Evolution of a Tertiary Dinoflagellate Plastid. PLOS ONE 2011 ;Volum 6.(4) s. e19132-
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2010
20 Dahle, Håkon; Roalkvam, Irene; Jørgensen, Steffen Leth; Hoem, Solveig; Mitra, Suparna; Huson, Daniel; Tooming-Klunderud, Ave; Thorseth, Ingunn Hindenes; Pedersen, Rolf-Birger; Steen, Ida Helene.
Microbial community structure of biomats and chimney walls of the Loki’s Castle hydrothermal field at 73°N. 8th International conference on extremophiles; 2010-09-12 - 2010-09-16
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21 Nederbragt, Alexander Johan; Tooming-Klunderud, Ave.
From next generation reads to genomes: experiences gained from different genome projects. Nordic GS FLX User meeting 2010; 2010-11-24 - 2010-11-24
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22 Tooming-Klunderud, Ave.
From next generation reads to genomes: experiences gained from different genome projects. Seminar i mikrobiell genetikk; 2010-09-22 - 2010-09-22
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23 Tooming-Klunderud, Ave.
HIgh throughput sequencing at the Norwegian Sequencing Centre: possibilities and procedures. seminar i mikrobiell genomikk; 2010-09-22 - 2010-09-22
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24 Tooming-Klunderud, Ave.
Planktothrix genome project - from 454 reads to interesting results. MicroMatNat Work in Progress; 2010-11-10 - 2010-11-10
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25 Tooming-Klunderud, Ave.
454 sequencing at the Norwegian Sequencing Centre: possibilities, procedures and projects. Seminar; 2010-05-20 - 2010-05-20
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2009
26 Andersen, Øivind; Dahle, Stine Veronica Wiborg; van Nes, Solveig; Bardal, Tora; Tooming-Klunderud, Ave; Kjørsvik, Elin; Galloway, Trine Falck.
Differential spatio-temporal expression and functional diversification of the myogenic regulatory factors MyoD1 and MyoD2 in Atlantic halibut (Hippoglossus hippoglossus). Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology 2009 ;Volum 154.(1) s. 93-101
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27 Grimholt, Unni; Malmstrøm, Martin; Nederbragt, Alexander Johan; Rounge, Trine Ballestad; Jentoft, Sissel; Tooming-Klunderud, Ave; Star, Bastiaan; Skage, Morten; Gaup, Hege Junita; Jakobsen, Kjetill Sigurd.
The lack of cod MHC class II. Genofisk meeting; 2009-10-14 - 2009-10-14
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28 Grimholt, Unni; Nederbragt, Alexander Johan; Rounge, Trine Ballestad; Malmstrøm, Martin; Star, Bastiaan; Tooming-Klunderud, Ave; Skage, Morten; Jentoft, Sissel; Gaup, Hege Junita; Bakke, Hege; Solbakken, Monica Hongrø; Jakobsen, Kjetill Sigurd.
The cod genome project. Third International Workshop on Fish Genomes; 2009-03-13 - 2009-03-14
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29 Tooming-Klunderud, Ave.
Cod genome project. Roche Nordic User Meeting; 2009-11-09 - 2009-11-09
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30 Tooming-Klunderud, Ave.
Library preparation for pyrosequencing. Metagenome meeting; 2009-05-25 - 2009-05-25
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31 Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Skage, Morten; Jakobsen, Kjetill Sigurd.
The Ultra-high Throughput Sequencing Platform at the University of Oslo. The Norwegian Biochemical Society Contact Meeting 2009; 2009-01-29 - 2009-02-01
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2008
32 Fewer, DP; Tooming-Klunderud, Ave; Jokela, J; Wahsten, M; Rouhiainen, L; Kristensen, Tom; Rohrlack, T; Jakobsen, Kjetill Sigurd; Sivonen, K.
Natural occurrence of microcystin synthetase deletion mutants capable of producing microcystins in strains of the genus Anabaena (Cyanobacteria). Microbiology 2008 ;Volum 154. s. 1007-1014
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33 Tooming-Klunderud, Ave; Fewer, DP; Rohrlack, Thomas; Jokela, J; Rouhiainen, L; Sivonen, K; Kristensen, Tom; Jakobsen, Kjetill Sigurd.
Evidence for positive selection acting on microcystin synthetase adenylation domains in three cyanobacterial genera. BMC Evolutionary Biology 2008 ;Volum 8. s. -
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34 Tooming-Klunderud, Ave; Mikalsen, Bjørg; Kristensen, Tom; Jakobsen, Kjetill Sigurd.
The mosaic structure of the mcyABC operon in Microcystis. Microbiology 2008 ;Volum 154. s. 1886-1899
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2007
35 Rounge, Trine Ballestad; Rohrlack, Thomas; Tooming-Klunderud, Ave; Kristensen, Tom; Jakobsen, Kjetill Sigurd.
Comparison of cyanopeptolin genes in Planktothrix, Microcystis, and Anabaena strains: Evidence for independent evolution within each genus. Applied and Environmental Microbiology 2007 ;Volum 73. s. 7322-7330
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36 Tooming-Klunderud, Ave; Rohrlack, Thomas; Shalchian-Tabrizi, Kamran; Kristensen, Tom; Jakobsen, Kjetill Sigurd.
Structural analysis of a non-ribosomal halogenated cyclic peptide and its putative operon from Microcystis: implications for evolution of cyanopeptolins. Microbiology 2007 ;Volum 153.(5) s. 1382-1393
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37 Østbye, Tone-Kari K; Andersen, Øivind; Frang, Ola T; Tooming-Klunderud, Ave; Jakobsen, Kjetill S.; Yafe, Anat; Etzioni, Shulamit; Moen, Thomas.
Molecular cloning of the Atlantic salmon activin receptor IIB cDNA - Localization of the receptor and myostatin in vivo and in vitro in muscle cells. Gene 2007 ;Volum 403.(01.feb) s. 159-169
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38 Østbye, Tone-Kari K; Wetten, Ola F.; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Yafe, Anat; Etzioni, Shulamit; Moen, Thomas; Andersen, Øivind.
Myostatin (MSTN) gene duplications in Atlantic salmon (Salmo salar): Evidence for different selective pressure on teleost MSTN-1 and -2. Gene 2007 ;Volum 403. s. 159-169
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