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2020
1 Allegra Mascaro, A. L.; Falotico, E.; Petkosi, S.; Pasquini, M.; Vannucci, L.; Tort-Colet, N.; Conti, E.; Resta, F.; Spalletti, C.; Ramalingasetty, S. T.; von Arnim, A.; Formento, E.; Angelidis, E.; Blixhavn, Camilla Hagen; Leergaard, Trygve B.; Caleo, M.; Destexhe, A.; Ijspeert, A.; Micera, S.; Laschi, C.; Jirsa, V.; Gewaltig, M-O.; Pavone, F. S..
Experimental and Computational Study on Motor Control and Recovery After Stroke: Toward a Constructive Loop Between Experimental and Virtual Embodied Neuroscience. Frontiers in Systems Neuroscience 2020 ;Volum 14.
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2 Bjerke, Ingvild Elise; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B..
Database of literature derived cellular measurements from the murine basal ganglia. Scientific Data 2020 ;Volum 7. s. -
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3 Bjerke, Ingvild Elise; Yates, Sharon Christine; Laja, Arthur; Witter, Menno; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B..
Densities and numbers of calbindin and parvalbumin positive neurons across the rat and mouse brain. iScience 2020 ;Volum 24:101906.(1) s. 1-52
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4 Reiten, Ingrid; Schlegel, Ulrike; Aasebø, Ida Elisabeth Jørgensen; Blixhavn, Camilla Hagen; Zehl, Lyuba; Kjelsberg, Kasper; Schmid, Oliver; Puchades, Maja; Weyers, Benjamin; Davison, Andrew P.; Dicksheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G..
Neuroscience community-gains from data sharing through the EBRAINS infrastructure. FENS 2020 Virtual Forum; 2020-06-11 - 2020-06-15
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5 Reiten, Ingrid; Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Aasebø, Ida Elisabeth Jørgensen; Yates, Sharon Christine; Kleven, Heidi; Øvsthus, Martin; Bjerke, Ingvild Elise; Puchades, Maja; Leergaard, Trygve B.; Bjaalie, Jan G..
Data sharing through the online EBRAINS platform: a new service for brain research. 4th HBP Student Conference on Interdisciplinary Brain Research; 2020-01-21 - 2020-01-22
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6 Schlegel, Ulrike; Reiten, Ingrid; Aasebø, Ida Elisabeth Jørgensen; Blixhavn, Camilla Hagen; Zehl, Lyuba; Kjelsberg, Kasper; Schmid, Oliver; Puchades, Maja; Weyers, Benjamin; Davison, Andrew P.; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G..
EBRAINS data sharing: benefits and workflow. FENS 2020 Virtual Forum; 2020-06-11 - 2020-06-15
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2019
7 Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Schlegel, Ulrike; Oliver, Schmid; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G..
EBRAINS fair data service: A novel infrastructure for making neuroscience data findable, accessible, interoperable, and reuseable. Sfn 2019; 2019-10-19 - 2019-10-24
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8 Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Zehl, Lyuba; Bjerke, Ingvild Elise; Schmid, Oliver; Øvsthus, Martin; Aasebø, Ida Elisabeth Jørgensen; Yates, Sharon Christine; Schlegel, Ulrike; Legouée, Elodie; Abrams, Mathew; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G..
Neuroinformatics platform for making neuroscience data Findable, Accessible, Interoperable, and Reuseable. INCF Conference 2019; 2019-08-31 - 2019-09-02
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9 Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Zarfarnia, Sara; Köhnen, Stefan; Hilverling, Anna; Kleven, Heidi; Bjerke, Ingvild Elise; Schmid, Oliver; Øvsthus, Martin; Yates, Sharon Christine; Schlegel, Ulrike; Legouée, Elodie; Abrams, Mathew; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G..
Resources for making neuroscience data FAIR. The Human Brain Project invites researchers to share, find, and use data via the new EBRAINS infrastructure. Nordic neuroscience 2019; 2019-06-12 - 2019-06-12
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10 Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Kleven, Heidi; Schlegel, Ulrike; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B..
Find and explore rodent brain data using 3D atlases in the new EBRAINS infrastructure. Neuroscience 2019; 2019-10-19 - 2019-10-23
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11 Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Kleven, Heidi; Schlegel, Ulrike; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B..
Infrastructure and workflow for integrating and navigating multi-scale and multi-modal murine neuroscience data using 3D digital brain reference atlases. Neuroinformatics 2019; 2019-09-01 - 2019-09-02
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12 Lillehaug, Sveinung; Yetman, Michael J.; Puchades, Maja; Checinska, Martyna; Kleven, Heidi; Jankowsky, Joanna L.; Bjaalie, Jan G.; Leergaard, Trygve B..
Data Descriptor: Brain-wide distribution of reporter expression in five transgenic tetracyclinetransactivator mouse lines. Scientific Data 2019 ;Volum 6. s. 1-15
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13 Osen, Kirsten Kjelsberg; Imad, Jala; Wennberg, Arvind Eirik; Papp, Eszter Agnes; Leergaard, Trygve Brauns.
Waxholm Space atlas of the rat brain auditory system: Three-dimensional delineations based on structural and diffusion magnetic resonance imaging. NeuroImage 2019 ;Volum 199. s. 38-56
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14 Post, Joakim Iver; Leergaard, Trygve B.; Ratz, Veronika; Walaas, S. Ivar; von Hörsten, Stephan; Nissen-Meyer, Lise Sofie Haug.
Differential Levels and Phosphorylation of Type 1 Inositol 1,4,5-Trisphosphate Receptor in Four Different Murine Models of Huntington Disease. Journal of Huntington's Disease 2019 ;Volum 8.(3) s. 271-289
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15 Puchades, Maja; Csúcs, Gergely; Ledergerber, Debora; Leergaard, Trygve B.; Bjaalie, Jan G..
Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool. PLOS ONE 2019 ;Volum 14.(5)
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16 Puchades, Maja; Yates, Sharon Christine; Groeneboom, Nicolaas; Csúcs, Gergely; Leergaard, Trygve B.; Bjaalie, Jan G..
Workflow for quantification and spatial analysis of labeling in large series of histological images from murine brains. Society for Neurosciences annual meeting; 2019-10-19 - 2019-10-23
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17 Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Yates, Sharon Christine; Øvsthus, Martin; Bjerke, Ingvild Elise; Kleven, Heidi; Groeneboom, Nicolaas Ervik; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B..
Integrating and analysing heterogeneous rodent neuroscience data using three-dimensional brain reference atlases. Nordic Neuroscience; 2019-06-12
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18 Yates, Sharon Christine; Groeneboom, Nicolaas; Csúcs, Gergely; Leergaard, Trygve B.; Puchades, Maja; Bjaalie, Jan G..
Batch quantification and spatial analysis of labelling in microscopic rodent brain sections. Neuroinformatics 2019; 2019-09-01 - 2019-09-02
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19 Yates, Sharon Christine; Groeneboom, Nicolaas Ervik; Coello, Christopher; Lichtenthaler, Stefan F.; Kuhn, Peer-Hendrik; Demuth, Hans-Ulrich; Hartlage-Rübsamen, Maike; Rossner, Steffen; Leergaard, Trygve B.; Kreshuk, Anna; Puchades, Maja; Bjaalie, Jan G..
QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Frontiers in Neuroinformatics 2019 ;Volum 13.
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2018
20 Bjerke, Ingvild Elise; Øvsthus, Martin; Papp, Eszter Agnes; Yates, Sharon Christine; Silvestri, L; Fiorilli, J; Pennartz, CMA; Pavone, FS; Puchades, Maja; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Data integration through brain atlasing: Human Brain Project tools and strategies. European psychiatry 2018 ;Volum 50. s. 70-76
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21 Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Markovic, Milica; Kleven, Heidi; Zafarnia, Sara; Köhnen, Stefan; Legouée, Elodie; Puchades, Maja; Schmid, Oliver; Davison, Andrew P.; Muller, Jeff; Dicksheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G..
HBP Curation service: Share your data via the Neuroinformatics platform. Human Brain Project Summit; 2018-10-16 - 2018-10-18
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22 Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Bjaalie, Jan G.; Leergaard, Trygve B..
Best practices for determining and documenting neuroanatomical locations in the rodent brain. FENS forum 2018; 2018-07-07
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23 Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Yates, Sharon Christine; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B..
Navigating the Murine Brain: Toward Best Practices for Determining and Documenting Neuroanatomical Locations in Experimental Studies. Frontiers in Neuroanatomy 2018 ;Volum 12.
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24 Blixhavn, Camilla Hagen; Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Kleven, Heidi; Puchades, Maja; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Data integration through digital brain atlasing: Making diverse neuroscience data discoverable using Human Brain Project infrastructure. FENS Forum; 2018-07-07 - 2018-07-11
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25 Mughal, Awais; Zhang, Lili; Fayzullin, Artem; Server, Andrés; Li, Yuping; Wu, Yingxi; Glass, Rainer; Meling, Torstein Ragnar; Langmoen, Iver Arne; Leergaard, Trygve Brauns; Vik-Mo, Einar O..
Patterns of Invasive Growth in Malignant Gliomas - The Hippocampus Emerges as an Invasion-Spared Brain Region. Neoplasia 2018 ;Volum 20.(7) s. 643-656
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26 Papp, Eszter Agnes.
Volumetric atlasing in the rodent brain: connecting experimental image data to standard anatomical space. : Faculty of Medicine, University of Oslo 2018 (ISBN 978-82-8377-194-7) 147 s.
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27 Stahl, Katja; Rahmani, Soulmaz; Prydz, Agnete; Skauli, Nadia; MacAulay, Nanna; Mylonakou, Maria-Niki; Torp, Reidun; Skare, Øivind; Berg, Torill; Leergaard, Trygve Brauns; Paulsen, Ragnhild Elisabeth; Ottersen, Ole Petter; Amiry-Moghaddam, Mahmood.
Targeted deletion of the aquaglyceroporin AQP9 is protective in a mouse model of Parkinson's disease. PLOS ONE 2018 ;Volum 13.(3)
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28 von Linstow, Christian Ulrich; Yates, Sharon Christine; Leergaard, Trygve B.; Plank, A-C; von Hörsten, S.; Puchades, Maja; Bjaalie, Jan G..
Whole brain analysis of Huntingtin aggregates in the F344 transgenic rat model of Huntington’s disease. FENS forum 2018; 2018-07-07 - 2018-07-11
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29 Yates, Sharon Christine; Puchades, Maja; kreshuk, anna; Kutra, Dominik; Leergaard, Trygve B.; Bjaalie, Jan G.; Groeneboom, Nicolaas.
HBP Analytic Workflow: from Microscopic Image Data to Extracted Features in Atlas Space. Human Brain Project annual summit; 2018-10-15 - 2018-10-18
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30 Zehl, Lyuba; Zafarnia, Sara; Köhnen, Stefan; Andersson, Krister Andreas; Markovic, Milica; Legouée, Elodie; Blixhavn, Camilla Hagen; Kleven, Heidi; Gui, Xiaoyun; Chervakov, Pavel; Schmid, Oliver; Bell, Simon; Gillespie, Tom; Abrams, Matthew; Davison, Andrew P.; Muller, Jeff; Leergaard, Trygve B.; Amunts, K; Bjaalie, Jan G.; Dicksheid, Timo.
Integrating neuroscientific data into a unified database: from individual experiments to a standardized metadata collection using the Human Brain Project Neuroinformatics Platform. Bernstein Conference; 2018-09-26 - 2018-09-28
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31 Zehl, Lyuba; Zafarnia, Sara; Köhnen, Stefan; Andersson, Krister Andreas; Markovic, Milica; Legouée, Elodie; Blixhavn, Camilla Hagen; Kleven, Heidi; Gui, Xiaoyun; Chervakov, Pavel; Schmid, Oliver; Bell, Simon; Gillespie, Tom; Abrams, Matthew; Davison, Andrew P.; Muller, Jeff; Leergaard, Trygve B.; Amunts, K; Bjaalie, Jan G.; Dicksheid, Timo.
Integrating neuroscientific data into a unified database: from individual experiments to a standardized metadata collection using the Human Brain Project Neuroinformatics Platform. Human Brain Project Summit; 2018-10-16 - 2018-10-18
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32 Øvsthus, Martin; Bjerke, Ingvild Elise; Yates, Sharon Christine; Bjaalie, Jan G.; Leergaard, Trygve Brauns.
Mapping topographical organization in mouse brain subcortical axonal projections using Human Brain Project infrastructure. FENS forum 2018; 2018-07-07 - 2018-07-11
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2017
33 Imad, Jala; Kleven, Heidi; Clascá, Francisco; Wennberg, Arvind Eirik; Osen, Kirsten Kjelsberg; Coello, Sebastian Christopher; Csúcs, Gergely; Papp, Eszter Agnes; Witter, Menno; Bjaalie, Jan G.; Leergaard, Trygve B..
Enriching and adding detail to the Waxholm Space rat brain reference atlas. Human Brain Project annual summit; 2017-10-17 - 2017-10-20
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34 Andersson, Krister Andreas; Bell, Simon; Bjerke, Ingvild Elise; Øvsthus, Martin; Blixhavn, Camilla Hagen; Kleven, Heidi; Puchades, Maja; Suzen, M; Denker, Michael; Davison, A.; Grün, Sonja; Leprince, Y; Dickscheid, Timo; McMurtrie, C; Telefont, Martin; Muller, Jeff; Leergaard, Trygve B.; Bjaalie, Jan G..
Submitting data and metadata through the HBP Data Workbench: Concepts, data flows, policies, and best practices. Human Brain Project annual summit; 2017-10-17 - 2017-10-20
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35 Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Puchades, Maja; Telefont, Martin; Jeff, Muller; Dickscheid, Timo; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Data integration through digital brain atlasing: Human Brain Project infrastructure. Society for Neuroscience annual meeting; 2017-11-11 - 2017-11-16
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36 Bjerke, Ingvild Elise; Andersson, Krister Andreas; Øvsthus, Martin; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B..
Navigating the rodent brain: Best practice recommendations for determining and documenting spatial location for neuroscience data. Nordic Neuroscience meeting; 2017-06-07 - 2017-07-09
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37 Bjerke, Ingvild Elise; Andersson, Krister; Øvsthus, Martin; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve Brauns.
Determining and documenting the anatomical location of experimental neuroscience data: Best practice recommendations. Society for Neuroscience annual meeting; 2017-11-11 - 2017-11-16
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38 Coello, Sebastian Christopher; Leergaard, Trygve B.; Bjaalie, Jan G..
Tackling the normalization of 2-D rodent histology sections in a 3-D coordinate space. Neuroinformatics 2017; 2017-08-20 - 2017-08-21
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39 Coello, Sebastian Christopher; Leergaard, Trygve B.; Bjaalie, Jan G..
Tackling the normalization of 2-D rodent histology sections in a 3-D coordinate space. Society for Neuroscience annual meeting; 2017-11-11 - 2017-11-16
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40 Imad, Jala; Osen, Kirsten Kjelsberg; Clascá, Francisco; Wennberg, Arvind E.; Coello, Sebastian Christopher; Csúcs, Gergely; Papp, Eszter Agnes; Bjaalie, Jan G.; Leergaard, Trygve Brauns.
Enriching and Adding Detail to the Waxholm Space Rat Brain Reference Atlas. Neuroscience 2017; 2017-11-13
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41 Leergaard, Trygve B..
Building and using rodent brain reference atlases for integration of experimental data. Human Brain Project Workshop: Understanding the Brain: Neurobiology for Non-Specialists; 2017-07-03 - 2017-07-05
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42 Leprince, Y; Coello, Sebastian Christopher; Csúcs, Gergely; Chervakov, P; Darine, Dmitri Aleksandrovitsj; Øvsthus, Martin; Bjerke, Ingvild Elise; Yates, Sharon Christine; Puchades, Maja; Leergaard, Trygve B.; Dickscheid, Timo; Bjaalie, Jan G..
Interactive tools for registering of 2D and 3D images to reference atlases. Human Brain Project annual summit; 2017-10-17 - 2017-10-20
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43 Puchades, Maja; Csúcs, Gergely; Checinska, Martyna; Øvsthus, Martin; Bjerke, Ingvild Elise; Andersson, Krister; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Neuroinformatics tool and workflow for anchoring of serial histological images in rodent brain 3D space. Society for Neuroscience annual meeting; 2017-11-11 - 2017-11-16
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44 Puchades, Maja; Øvsthus, Martin; Bjerke, Ingvild Elise; Andersson, Krister; Csúcs, Gergely; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Data integration through digital brain atlasing: semiautomatic spatial registration of serial histological images to rodent brain 3D reference atlases. Nordic Neuroscience meeting; 2017-06-07 - 2017-06-09
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45 Timonidis, Nestor; Bakker, Rembrandt; Øvsthus, Martin; Garcia-Amado, M; Porrero, C; Leergaard, Trygve B.; Clascá, Francisco; Tiesinga, Paul.
Towards predicting the full mesoconnectome based on data fusion. Human Brain Project annual summit; 2017-10-17 - 2017-10-20
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46 Yates, Sharon Christine; Puchades, Maja; Coello, Sebastian Christopher; Kreshuk, Anna; Hartlage-Rübsamen, Maike; Rossner, Steffen; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Workflow for automated quantification and spatial analysis of labeling in microscoping rodent brain sections. Society for Neuroscience annual meeting; 2017-11-11 - 2017-11-16
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47 Yates, Sharon Christine; Puchades, Maja; Coello, Sebastian Christopher; Kreshuk, Anna; Hartlage-Rübsamen, Maike; Rossner, Steffen; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Workflow for automated quantification and spatial analysis of labelling in microscoping rodent brain sections. HBP annual meeting 2017; 2017-10-16 - 2017-10-22
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2016
48 Blackstad, Jan Sigurd Beddari; Osen, Kirsten Kjelsberg; Scharfman, Helen E.; Storm-Mathisen, Jon; Blackstad, Theodor; Leergaard, Trygve Brauns.
Observations on hippocampal mossy cells in mink (Neovison vison) with special reference to dendrites ascending to the granular and molecular layers. Hippocampus 2016 ;Volum 26.(2) s. 229-245
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49 Leergaard, Trygve B..
Navigating the rodent brain: An anatomist’s guide to assigning location to brain image data. European Molecular Imaging Meeting; 2016-03-08 - 2016-03-10
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50 Papp, Eszter Agnes; Leergaard, Trygve Brauns; Csúcs, Gergely; Bjaalie, Jan G..
Brain-wide mapping of axonal connections: Workflow for automated detection and spatial analysis of labeling in microscopic sections. Frontiers in Neuroinformatics 2016 ;Volum 10.(11)
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