Cristin

2020
1.	Ting, Yi Tian; Dahal-Koirala, Shiva; Kim, Hui Shi Keshia; Qiao, Shuo Wang; Neumann, Ralf Stefan; Lundin, Knut Erik Aslaksen; Petersen, Jan; Reid, Hugh H.; Sollid, Ludvig Magne; Rossjohn, Jamie. A molecular basis for the T cell response in HLA-DQ2.2 mediated celiac disease. Proceedings of the National Academy of Sciences of the United States of America 2020 ;Volum 117.(6) s. 3063-3073 OUS UiO Untitled
2019
2.	Bartolomé Casado, Raquel; Landsverk, Ole J. B.; Chauhan, Sudhir Kumar; Richter, Lisa Maria; Phung, Danh; Greiff, Victor; Risnes, Louise Fremgaard; Yao, Ying; Neumann, Ralf Stefan; Yaqub, Sheraz; Øyen, Ole; Horneland, Rune; Aandahl, Einar Martin; Paulsen, Vemund; Sollid, Ludvig Magne; Qiao, Shuo Wang; Bækkevold, Espen Sønderaal; Jahnsen, Frode Lars. Resident memory CD8 T cells persist for years in human small intestine. Journal of Experimental Medicine 2019 ;Volum 216.(10) s. 2412-2426 OUS UiO Untitled

3.	Dahal-Koirala, Shiva; Neumann, Ralf Stefan; Jahnsen, Jørgen; Lundin, Knut Erik Aslaksen; Sollid, Ludvig Magne. On the immune response to barley in celiac disease: Biased and public T-cell receptor usage to a barley unique and immunodominant gluten epitope. European Journal of Immunology 2019 s. 1-14 AHUS OUS UiO Untitled

4.	Eggesbø, Linn Margrethe; Risnes, Louise Fremgaard; Neumann, Ralf Stefan; Lundin, Knut Erik Aslaksen; Christophersen, Asbjørn; Sollid, Ludvig Magne. Single-cell TCR sequencing of gut intraepithelial γδ T cells reveals a vast and diverse repertoire in celiac disease. Mucosal Immunology 2019 s. 1-9 OUS UiO Untitled

5.	Iversen, Rasmus; Roy, Bishnudeo; Stamnæs, Jorunn; Høydahl, Lene Støkken; Hnida, Kathrin; Neumann, Ralf Stefan; Korponay-Szabó, Ilma R.; Lundin, Knut Erik Aslaksen; Sollid, Ludvig Magne. Efficient T cell–B cell collaboration guides autoantibody epitope bias and onset of celiac disease. Proceedings of the National Academy of Sciences of the United States of America 2019 ;Volum 116.(30) s. 15134-15139 OUS UiO Untitled
2018
6.	Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Haraldsen, Arthur Alexander Blørstad; Tarver, James E.; Suga, Hiroshi; Donoghue, Philip C.J.; Peterson, Kevin J.; Ruiz-Trillo, Iñaki; Grini, Paul Eivind; Shalchian-Tabrizi, Kamran. Unicellular origin of the animal microRNA machinery. Current Biology 2018 ;Volum 28.(20) s. 3288-3295.e5 OUS UiO Untitled

7.	Dahal-Koirala, Shiva; Ciacchi, Laura; Petersen, Jan; Risnes, Louise Fremgaard; Neumann, Ralf Stefan; Christophersen, Asbjørn; Lundin, Knut Erik Aslaksen; Reid, Hugh H.; Qiao, Shuo Wang; Rossjohn, Jamie; Sollid, Ludvig Magne. Discriminative T-cell receptor recognition of highly homologous HLA-DQ2-bound gluten epitopes. Journal of Biological Chemistry 2018 ;Volum 294.(3) s. 941-952 OUS UiO Untitled

8.	Gunnarsen, Kristin Støen; Høydahl, Lene Støkken; Neumann, Ralf Stefan; Bjerregaard-Andersen, Kaare; Nilssen, Nicolay Rustad; Sollid, Ludvig Magne; Sandlie, Inger; Løset, Geir Åge. Soluble T-cell receptor design influences functional yield in an E. coli chaperone-assisted expression system. PLOS ONE 2018 ;Volum 13:e0195868.(4) s. 1-15 OUS UiO Untitled

9.	Risnes, Louise Fremgaard; Christophersen, Asbjørn; Dahal-Koirala, Shiva; Neumann, Ralf Stefan; Sandve, Geir Kjetil; Sarna, Vikas Kumar; Lundin, Knut Erik Aslaksen; Qiao, Shuo Wang; Sollid, Ludvig Magne. Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease. Journal of Clinical Investigation 2018 ;Volum 128.(6) s. 2642-2650 OUS UiO Untitled
2017
10.	Gunnarsen, Kristin Støen; Høydahl, Lene Støkken; Risnes, Louise Fremgaard; Dahal-Koirala, Shiva; Neumann, Ralf Stefan; Bergseng, Elin; Frigstad, Terje; Frick, Rahel; du Pré, Marie Fleur; Dalhus, Bjørn; Lundin, Knut Erik Aslaksen; Qiao, Shuo Wang; Sollid, Ludvig Magne; Sandlie, Inger; Løset, Geir Åge. A TCRα framework–centered codon shapes a biased T cell repertoire through direct MHC and CDR3β interactions. JCI Insight 2017 ;Volum 2.(17) OUS UiO Untitled

11.	Roy, Bishnudeo; Neumann, Ralf Stefan; Snir, Omri; Iversen, Rasmus; Sandve, Geir Kjetil; Lundin, Knut Erik Aslaksen; Sollid, Ludvig Magne. High-Throughput Single-Cell Analysis of B Cell Receptor Usage among Autoantigen-Specific Plasma Cells in Celiac Disease. Journal of Immunology 2017 ;Volum 199.((2)) s. 782-791 OUS UiO Untitled
2016
12.	Haraldsen, Arthur Alexander Blørstad; Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Grini, Paul Eivind; Shalchian-Tabrizi, Kamran. Pre-metazoan origin of animal microRNAs. European Society of Evolutionary Developmental Biology; 2016-07-26 - 2016-07-29 UiO Untitled
2015
13.	Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad; Shalchian-Tabrizi, Kamran. Expanding our knowledge about parasites using PATHOS-DB (The PArasiTe–HOSt-DataBase). VII European Congress of Protistology; 2015-09-05 - 2015-09-10 UiO Untitled

14.	Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad; Shalchian-Tabrizi, Kamran. HIDDEN PROTIST PARASITES: HOW CAN THEY BE DETECTED?. 2015 Aquatic Sciences Meeting - Aquatic Sciences: Global And Regional Perspectives — North Meets South;; 2015-02-22 - 2015-02-27 UiO Untitled

15.	Bråte, Jon; Adamski, Marcin; Neumann, Ralf Stefan; Shalchian-Tabrizi, Kamran; Adamska, Maja. Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum. Proceedings of the Royal Society of London. Biological Sciences 2015 ;Volum 282.(1821) s. 1-9 UiB UiO Untitled

16.	Kumar, Surendra; Krabberød, Anders Kristian; Neumann, Ralf Stefan; Michalickova, Katerina; Zhao, Sen; Zhang, Xiaoli; Shalchian-Tabrizi, Kamran. BIR pipeline for preparation of phylogenomic data. Evolutionary Bioinformatics 2015 ;Volum 11. s. 79-83 OUS UiO Untitled
2014
17.	Neumann, Ralf Stefan; Kumar, Surendra; Haverkamp, Thomas Hendricus Augustus; Shalchian-Tabrizi, Kamran. BLASTGrabber: A bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data. BMC Bioinformatics 2014 ;Volum 15.(128) s. - AHUS UiO Untitled

18.	Neumann, Ralf Stefan; Kumar, Surendra; Shalchian-Tabrizi, Kamran. BLAST output visualization in the new sequencing era. Briefings in Bioinformatics 2014 ;Volum 15.(4) s. 484-503 UiO Untitled
2011
19.	Høydahl, Lene Støkken; Neumann, Ralf Stefan; Qiao, Shuo Wang; Sollid, Ludvig Magne; Sandlie, Inger; Løset, Geir Åge. Development of a High Affinity TCR Reagent by Phage Display to Study Antigen Presentation in Celiac Disease. Scandinavian Journal of Immunology 2011 ;Volum 73.(4) s. 372-372 UiO Untitled