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2023
1 Benarroch, Louise; Madsen-Østerbye, Julia-Kristina; Abdelhalim, Mohamed Ibrahim Mohamed; Mamchaoui, Kamel; Ohana, Jessica; Bigot, Anne; Mouly, Vincent; Bonne, Gisèle; Bertrand, Anne T.; Collas, Philippe.
Cellular and Genomic Features of Muscle Differentiation from Isogenic Fibroblasts and Myoblasts. Cells 2023 ;Volum 12.(15) s. -
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2 Fracassi, C; Ugge', M; Abdelhalim, Mohamed Ibrahim Mohamed; Zapparoli, E; Simoni, M; Magliulo, D; Mazza, D; Lazarevic, D; Morelli, MJ; Collas, Philippe; Bernardi, R.
PML modulates epigenetic composition of chromatin to regulate expression of pro-metastatic genes in triple-negative breast cancer. Nucleic Acids Research (NAR) 2023 ;Volum 51.(20) s. 11024-11039
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3 Madsen-Østerbye, Julia-Kristina; Abdelhalim, Mohamed Ibrahim Mohamed; Hazell Pickering, Sarah Jai; Collas, Philippe.
Gene Regulatory Interactions at Lamina-Associated Domains. Genes 2023 ;Volum 14.(2) s. 1-15
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4 Rossini, Roberto; Oshaghi, Mohammadsaleh; Nekrasov, Maxim; Bellanger, Aurelie Nathalie Pascale; Domaschenz, Renae; Dijkwel, Yasmin; Abdelhalim, Mohamed Ibrahim Mohamed; Collas, Philippe; Tremethick, David; Paulsen, Jonas.
Multi-level 3D genome organization deteriorates during breast cancer progression.. bioRxiv 2023 s. -
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5 Russ, Brendan E.; Barugahare, Adele; Dakle, Pushkar; Tsyganov, Kirril; Quon, Sara; Yu, Bingfei; Li, Jasmine; Lee, Jason K.C.; Olshansky, Moshe; He, Zhaohren; Harrison, Paul F.; See, Michael; Nussing, Simone; Morey, Alison E.; Udupa, Vibha A.; Bennett, Taylah J.; Kallies, Axel; Murre, Cornelis; Collas, Philippe; Powell, David; Goldrath, Ananda W.; Turner, Stephen J..
Active maintenance of CD8<sup>+</sup> T cell naivety through regulation of global genome architecture. Cell reports 2023 ;Volum 42.(10) s. -
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6 Voon, Hsiao P. J.; Hii, Linda; Garvie, Andrew; Udugama, Maheshi; Krug, Brian; Russo, Caterina; Chüeh, Anderly C.; Daly, Roger J.; Morey, Alison; Bell, Toby D. M.; Turner, Stephen J.; Rosenbluh, Joseph; Daniel, Paul; Firestein, Ron; Mann, Jeffrey R.; Collas, Philippe; Jabado, Nada; Wong, Lee H..
Pediatric glioma histone H3.3 K27M/G34R mutations drive abnormalities in PML nuclear bodies. Genome Biology 2023 ;Volum 24.(1) s. -
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2022
7 Bellanger, Aurelie Nathalie Pascale; Madsen-Østerbye, Julia-Kristina; Galigniana, Natalia; Collas, Philippe.
Restructuring of Lamina-Associated Domains in Senescence and Cancer. Cells 2022 ;Volum 11.(11) s. -
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8 Collas, Philippe; Mosbaha, Helena; Akinci, Baris; Araújo-Vilar, David; Tudela, Juan Carrion; Ceccarinif, Giovanni; Farooqi, Sadaf; Fernández-Pomboi, Antía; Jérub, Isabelle; Karpe, Fredrik; Krausel, Kerstin; Maffei, Margherita; Miehlel, Konstanze; Oral, Elif; de Tudela, Naca Perez; Prieur, Xavier; Rochford, Justin; Sanders, Rebecca; Santinif, Ferruccio; Savage, David B.; von Schnurbeinr, Julia; Semples, Robert; Stears, Anna; Sorkina, Ekaterina; Vantyghemv, Marie-Christine; Vatier, Camille; Vidal-Puig, Antonio; Vigourouxa, Corinne; Wabitsch, Martin.
Proceedings of the annual meeting of the European Consortium of Lipodystrophies (ECLip) Cambridge, UK, 7–8 April 2022. Eclip Meeting Proceedings; 2022-04-07 - 2022-04-08
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9 Kuo, Feng-Chih; Neville, Matt J.; Sabaratnam, Rugivan; Wesolowska-Andersen, Agata; Phillips, Daniel; Wittemans, Laura B.L.; van Dam, Andrea D.; Loh, Nellie Y.; Todorcevic, Marijana; Denton, Nathan; Kentistou, Katherine A.; Joshi, Peter K.; Christodoulides, Constantinos; Langenberg, Claudia; Collas, Philippe; Karpe, Fredrik; Pinnick, Katherine E..
HOTAIR interacts with PRC2 complex regulating the regional preadipocyte transcriptome and human fat distribution. Cell reports 2022 ;Volum 40.(4) s. -
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10 Madsen-Østerbye, Julia-Kristina; Abdelhalim, Mohamed Ibrahim Mohamed; Baudement, Marie-Odile; Collas, Philippe.
Local euchromatin enrichment in lamina-associated domains anticipates their repositioning in the adipogenic lineage. Genome Biology 2022 ;Volum 23. s. 1-19
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11 Madsen-Østerbye, Julia-Kristina; Bellanger, Aurelie Nathalie Pascale; Galigniana, Natalia; Collas, Philippe.
Biology and Model Predictions of the Dynamics and Heterogeneity of Chromatin-Nuclear Lamina Interactions. Frontiers in Cell and Developmental Biology 2022 ;Volum 10. s. 1-13
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12 Mosbaha, Helena; Akinci, Baris; Araújo-Vilar, David; Tudela, Juan Carrion; Collas, Philippe; Ceccarinif, Giovanni; Farooqi, Sadaf; Fernández-Pomboi, Antía; Jérub, Isabelle; Karpe, Fredrik; Krausel, Kerstin; Maffei, Margherita; Miehlel, Konstanze; Oral, Elif; de Tudela, Naca Perez; Prieur, Xavier; Rochford, Justin; Sanders, Rebecca; Santinif, Ferruccio; Savage, David B.; von Schnurbeinr, Julia; Semples, Robert; Stears, Anna; Sorkina, Ekaterina; Vantyghemv, Marie-Christine; Vatier, Camille; Vidal-Puig, Antonio; Vigourouxa, Corinne; Wabitsch, Martin.
Proceedings of the annual meeting of the European Consortium of Lipodystrophies (ECLip) Cambridge, UK, 7–8 April 2022. Annales d'Endocrinologie 2022 ;Volum 83.(6) s. 461-468
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13 Paulsen, Jonas; Collas, Philippe.
Modeling the 3D Genome Using Hi-C and Nuclear Lamin-Genome Contacts. I: Hi-C Data Analysis Methods and Protocols. Humana Press 2022 ISBN 978-1-0716-1390-0. s. 337-352
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14 Potolitsyna, Evdokiia; Hazell Pickering, Sarah Jai; Germier, Thomas Lodewijk Guy; Collas, Philippe; Briand, Nolwenn.
Long non-coding RNA HOTAIR regulates cytoskeleton remodeling and lipid storage capacity during adipogenesis. Scientific Reports 2022 ;Volum 12.(1) s. -
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15 Potolitsyna, Evdokiia; Hazell Pickering, Sarah Jai; Tooming-Klunderud, Ave; Collas, Philippe; Briand, Nolwenn.
De novo annotation of lncRNA HOTAIR transcripts by long-read RNA capture-seq reveals a differentiation-driven isoform switch. BMC Genomics 2022 ;Volum 23.(1) s. -
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16 Udugama, Maheshi; Vinod, Benjamin; Chan, F. Lyn; Hii, Linda; Garvie, Andrew; Collas, Philippe; Kalitsis, Paul; Steer, David; Das, Partha P; Tripathi, Pratibha; Mann, Jeffrey R; Voon, Hsiao P. J; Wong, Lee H.
Histone H3.3 phosphorylation promotes heterochromatin formation by inhibiting H3K9/K36 histone demethylase. Nucleic Acids Research (NAR) 2022 ;Volum 50.(8) s. 4500-4514
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2021
17 Brunet, Annaëlle; Destainville, Nicolas; Collas, Philippe.
Physical constraints in polymer modeling of chromatin associations with the nuclear periphery at kilobase scale. Nucleus 2021 ;Volum 12.(1) s. 6-20
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18 Liyakat Ali, Tharvesh Moideen; Brunet, Annaëlle; Collas, Philippe; Paulsen, Jonas.
TAD cliques predict key features of chromatin organization. BMC Genomics 2021 ;Volum 22.(1) s. -
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19 Narud, Birgitte; Khezri, Abdolrahman; Zeremichael, Teklu Tewoldebrhan; Stenseth, Else-Berit; Heringstad, Bjørg; Johannisson, Anders; Morrell, Jane; Collas, Philippe; Myromslien, Frøydis Deinboll; Kommisrud, Elisabeth.
Sperm chromatin integrity and DNA methylation in Norwegian Red bulls of contrasting fertility. Molecular Reproduction and Development 2021 ;Volum 88.(3) s. 187-200
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20 Udugama, Maheshi; Hii, Linda; Garvie, A.; Cervini, M.; Vinod, B.; Chan, F. Lyn; Das, P.P.; Mann, Jeffrey R.; Collas, P.; Voon, Hsiao P.J.; Wong, Lee H..
Mutations inhibiting KDM4B drive ALT activation in ATRX-mutated glioblastomas. Nature Communications 2021 ;Volum 12.(1) s. 1-11
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2020
21 Briand, Nolwenn; Collas, Philippe.
Lamina-associated domains: Peripheral matters and internal affairs. Genome Biology 2020 ;Volum 21:85. s. 1-25
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22 Vietri, Marina; Schultz, Sebastian; Bellanger, Aurélie Nathalie Pascale; Jones, Carl; Petersen, Louise I; Raiborg, Camilla; Skarpen, Ellen; Pedurupillay Jesuthasan, Christeen Ramane; Kjos, Ingrid; Kip, Eline; Timmer, Ronny; Jain, Ashish; Collas, Philippe; Knorr, Roland; Grellscheid, Sushma; Kusumaatmaja, Halim; Brech, Andreas; Micci, Francesca; Stenmark, Harald Alfred; Campsteijn, Coen.
Unrestrained ESCRT-III drives micronuclear catastrophe and chromosome fragmention. Nature Cell Biology 2020 ;Volum 22. s. 856-867
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2019
23 Brunet, Annaëlle; Forsberg, Anna Frida; Fan, Qiong; Sæther, Thomas; Collas, Philippe.
Nuclear lamin B1 interactions with chromatin during the circadian cycle are uncoupled from periodic gene expression. Frontiers in Genetics 2019 ;Volum 10.
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24 Collas, Philippe; Liyakat Ali, Tharvesh Moideen; Brunet, Annaëlle; Germier, Thomas.
Finding friends in the crowd: Three-dimensional cliques of topological genomic domains. Frontiers in Genetics 2019 ;Volum 10:602. s. 1-11
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25 Forsberg, Frida; Brunet, Annaëlle; Liyakat Ali, Tharvesh Moideen; Collas, Philippe.
Interplay of lamin A and lamin B LADs on the radial positioning of chromatin. Nucleus 2019 ;Volum 10.(1) s. 7-20
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26 Ménard, C; Dulong, J; Roulois, D; Hébraud, B; Verdière, L; Pangault, C; Sibut, V; Bezier, I; Bescher, N; Monvoisin, C; Gardelorge, M; Bertheuil, N; Flécher, E; Casteilla, Louis; Collas, Philippe; Sensebé, Luc; Bourin, P; Espagnolle, N; Tarte, K.
Integrated Transcriptomic, Phenotypic, and Functional Study Reveals Tissue-Spesific Immune Properties of Mesenchymal Stromal Cells.. Stem Cells 2019 ;Volum 38. s. 146-159
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27 Paulsen, Jonas; Liyakat Ali, Tharvesh Moideen; Nekrasov, Maxim; Delbarre, Erwan; Baudement, Marie-Odile; Kurscheid, Sebastian; Tremethick, David; Collas, Philippe.
Long-range interactions between topologically associating domains shape the four-dimensional genome during differentiation. Nature Genetics 2019 ;Volum 51.(5) s. 835-843
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28 Spirkoski, Jane; Shah, Akshay; Reiner, Andrew Henry; Collas, Philippe; Delbarre, Erwan.
PML modulates H3.3 targeting to telomeric and centromeric repeats in mouse fibroblasts. Biochemical and Biophysical Research Communications - BBRC 2019 ;Volum 511.(4) s. 882-888
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29 Toribio-Fernández, R; Herrero-Fernandez, B; Zorita, V; López, JA; Vázquez, J; Criado, G; Pablos, JL; Collas, Philippe; Sanchez-Madrid, F; Andrés, V; Gonzalez-Granado, JM.
Lamin A/C deficiency in CD4+ T-cells enhances regulatory T-cells and prevents inflammatory bowel disease.. Journal of Pathology 2019 ;Volum 249.(4) s. 509-522
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2018
30 Briand, Nolwenn; Cahyani, Inswasti; Madsen-Østerbye, Julia-Kristina Jensen; Paulsen, Jonas; Rønningen, Torunn; Sørensen, Anita Løvstad; Collas, Philippe.
Lamin A, Chromatin and FPLD2:Not ust a Peripheral Ménage-à-Trois.. Frontiers in Cell and Developmental Biology 2018 ;Volum 6. s. -
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31 Briand, Nolwenn; Collas, Philippe.
Laminopathy-causing lamin A mutations reconfigure lamina-associated domains and local spatial chromatin conformation. Nucleus 2018 ;Volum 9.(1) s. 216-226
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32 Briand, Nolwenn; Guénantin, Anne-Claire; Jeziorowska, Dorota; Shah, Akshay; Mantecon, Matthieu; Capel, Emilie; Garcia, Maria; Oldenburg, Anja; Paulsen, Jonas; Hulot, Jean-Sébastien; Vigouroux, Corinne; Collas, Philippe.
The lipodystrophic hotspot lamin A p.R482W mutation deregulates the mesodermal inducer T/Brachyury and early vascular differentiation gene networks. Human Molecular Genetics 2018 ;Volum 27.(8) s. 1447-1459
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33 La Cour Poulsen, Lars; Edelmann, Reidunn Jetne; Krüger, Stig; Diéguez-Hurtado, Rodrigo; Shah, Akshay; Stav-Noraas, Tor Espen; Renzi, Anastasia; Szymanska, Monika; Wang, Junbai; Ehling, Manuel; Benedito, Rui; Kasprzycka, Monika; Bækkevold, Espen Sønderaal; Sundnes, Olav; Midwood, Kim S.; Scott, Helge; Collas, Philippe; Siebel, Christian W.; Adams, Ralf H.; Haraldsen, Guttorm; Sundlisæter, Eirik; Hol, Johanna.
Inhibition of endothelial NOTCH1 signaling attenuates inflammation by reducing cytokine-mediated histone acetylation at inflammatory enhancers. Arteriosclerosis, Thrombosis and Vascular Biology 2018 ;Volum 38.(4) s. 854-869
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34 Meier, Michael; Grant, Jenny; Dowdle, Amy; Thomas, Armarni; Gerton, Jennifer; Collas, Philippe; O`Sullivan, Justin M; Horsfield, Julia A.
Cohesin facilitates zygotic genome activation in zebrafish. Development 2018 ;Volum 145.(1)
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35 Paulsen, Jonas; Liyakat Ali, Tharvesh Moideen; Collas, Philippe.
Computational 3D genome modeling using Chrom3D. Nature Protocols 2018 ;Volum 13.(5) s. 1137-1152
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36 Rogne, Marie; Chu, Dinh Toi; Küntziger, Thomas M.; Mylonakou, Maria-Niki; Collas, Philippe; Tasken, Kjetil.
OPA1-anchored PKA phosphorylates perilipin 1 on S522 and S497 in adipocytes differentiated from human adipose stem cells. Molecular Biology of the Cell 2018 ;Volum 29.(12) s. 1487-1501
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37 Udugama, Maheshi; Sanij, Elaine; Voon, Hsiao P.J.; Son, Jinbae; Hii, Linda; Henson, Jeremy D.; Lyn Chan, F.; Chang, Fiona T.M.; Liu, Yumei; Pearson, Richard B.; Kalitsis, Paul; Mann, Jeffrey R.; Collas, Philippe; Hannan, Ross D.; Wong, Lee H..
Ribosomal DNA copy loss and repeat instability in ATRX-mutated cancers. Proceedings of the National Academy of Sciences of the United States of America 2018 ;Volum 115.(18) s. 4737-4742
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2017
38 Delbarre, Erwan; Ivanauskiene, Kristina; Spirkoski, Jane; Shah, Akshay; Vekterud, Kristin; Moskaug, Jan Øivind; Bøe, Stig Ove; Wong, Lee H.; Küntziger, Thomas M.; Collas, Philippe.
PML protein organizes heterochromatin domains where it regulates histone H3.3 deposition by ATRX/DAXX. Genome Research 2017 ;Volum 27.(6) s. 913-921
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39 Garcia-Nieto, Pablo E; Schwartz, Erin K; King, Devin A; Paulsen, Jonas; Collas, Philippe; Herrera, Rafael E; Morrison, Ashby J.
Carcinogen susceptibility is regulated by genome architecture and predicts cancer mutagenesis. EMBO Journal 2017 ;Volum 36.(19) s. 2829-2843
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40 Guénantin, Anne-Claire; Briand, Nolwenn; Capel, Emilie; Dumont, Florent; Morichon, Romain; Provost, Claire; Stillitano, Francesca; Jeziorowska, Dorota; Siffroi, Jean-Pierre; Hajjar, Roger J.; Fève, Bruno; Hulot, Jean-Sébastien; Collas, Philippe; Capeau, Jacqueline; Vigouroux, Corinne.
Functional human beige adipocytes from induced pluripotent stem cells. Diabetes 2017 ;Volum 66.(6) s. 1470-1478
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41 Holm, Kristine Lillebø; Syljuåsen, Randi G.; Hasvold, Grete; Alsøe, Lene; Nilsen, Hilde Loge; Ivanauskiene, Kristina; Collas, Philippe; Shaposhnikov, Sergey; Collins, Andrew Richard; Indrevær, Randi Larsen; Aukrust, Pål; Fevang, Børre; Blomhoff, Heidi Kiil.
TLR9 stimulation of B-cells induces transcription of p53 and prevents spontaneous and irradiation-induced cell death independent of DNA damage responses. Implications for Common variable immunodeficiency. PLOS ONE 2017 ;Volum 12.(10)
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42 Lopez Soop, Graciela; Rønningen, Torunn; Rogala, Agnieszka; Richartz, Nina; Blomhoff, Heidi Kiil; Thiede, Bernd; Collas, Philippe; Küntziger, Thomas M..
AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint. Cell Cycle 2017 ;Volum 16.(10) s. 947-956
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43 López-Soop, Graciela; Rønningen, Torunn; Rogala, Agnieszka; Richartz, Nina; Blomhoff, Heidi Kiil; Thiede, Bernd; Collas, Philippe; Küntziger, Thomas M..
AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint.. Cell Cycle 2017 ;Volum 16.(10) s. 947-956
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44 Oldenburg, Anja; Briand, Nolwenn; Sørensen, Anita Løvstad; Cahyani, Inswasti; Shah, Akshay; Moskaug, Jan Øivind; Collas, Philippe.
A lipodystrophy-causing lamin A mutant alters conformation and epigenetic regulation of the anti-adipogenic MIR335 locus. Journal of Cell Biology 2017 ;Volum 216.(9) s. 2731-2743
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45 Paulsen, Jonas; Sekelja, Monika; Oldenburg, Anja; Barateau, Alice; Briand, Nolwenn; Delbarre, Erwan; Shah, Akshay; Sørensen, Anita Løvstad; Vigouroux, Corinne; Buendia, Brigitte; Collas, Philippe.
Chrom3D: Three-dimensional genome modeling from Hi-C and nuclear lamin-genome contacts. Genome Biology 2017 ;Volum 18:21. s. 1-15
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46 Zink, Lisa-Maria; Delbarre, Erwan; Eberl, H Christian; Keilhauer, Eva C; Bonisch, Clemens; Punzeler, Sebastian; Bartkuhn, Marek; Collas, Philippe; Mann, Matthias; Hake, Sandra B..
H3.Y discriminates between HIRA and DAXX chaperone complexes and reveals unexpected insights into human DAXX-H3.3-H4 binding and deposition requirements. Nucleic Acids Research (NAR) 2017 ;Volum 45.(10) s. 5691-5706
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2016
47 Buemo, Carla; Gambini, Andres; Moro, Lucia Natalia; Hiriart, Maria Ines; Fernandez-Martin, Rafael; Collas, Philippe; Salamone, Daniel Felipe.
Embryo aggregation in pig improves cloning efficiency and embryo quality. PLOS ONE 2016 ;Volum 11.(2)
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48 Collas, Philippe; Oldenburg, Anja.
Mapping Nuclear Lamin-Genome Interactions by Chromatin Immunoprecipitation of Nuclear Lamins. Methods in molecular biology 2016 s. 315-324
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49 Legartová, Soña; Sehnalová, Petra; Malyšková, Barbora; Küntziger, Thomas M.; Collas, Philippe; Cmarko, Dušan; Raška, Ivan; Sorokin, Dmitry; Kozubek, Stanislav; Bártová, Eva.
Localized Movement and Levels of 53BP1 Protein Are Changed by g-irradiation in PML Deficient Cells. Journal of Cellular Biochemistry 2016 ;Volum 117.(11) s. 2583-2596
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50 Lindstad, Torstein; Qu, Su; Sikkeland, Jørgen; Jin, Yang; Kristian, Alexandr; Mælandsmo, Gunhild; Collas, Philippe; Saatcioglu, Fahri.
STAMP2 is required for human adipose-derived stem cell differentiation and adiposite-facilitated prostrate cancer grown in vivo.. OncoTarget 2016 ;Volum 8.(54) s. 91817-91827
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