Current Research Information SysTem In Norway
 
 

 Norsk versjon


 
Mainpage
Research results/NVI
Researchers
Projects
Research units
Log in
About Cristin
 
 
   
Back to search     Short format     Full format    
Export to


Showing results 1-50 of 53 << Previous 1 2    Next >>

2023
1 Fornes, Oriol; Av-Shalom, Tamar V; Korecki, Andrea J; Farkas, Rachelle A; Arenillas, David J; Mathelier, Anthony; Simpson, Elizabeth M; Wasserman, Wyeth W.
OnTarget: In silico design of MiniPromoters for targeted delivery of expression. Nucleic Acids Research (NAR) 2023 ;Volume 51.(W1) p. W379-W386
UiO OUS Untitled
 
2 Mathelier, Anthony.
Insights into the disruption of gene regulatory programs in cancers. Centre de Recherches en Cancérologie de Toulouse seminar; 2023-10-20
UiO Untitled
 
3 Mathelier, Anthony.
Insights into the disruption of gene regulatory programs in cancers. NORDIC EMBL PARTNERSHIP MEETING 2023; 2023-09-12 - 2023-09-14
UiO Untitled
 
4 Rauluseviciute, Ieva; Launay, Timothée; Barzaghi, Guido; Nikumbh, Sarvesh; Lenhard, Boris; Krebs, Arnaud Regis; Castro Mondragon, Jaime Abraham; Mathelier, Anthony.
Identification of transcription factor co-binding patterns with non-negative matrix factorization. bioRxiv 2023
UiO Untitled
 
5 Rauluseviciute, Ieva; Riudavets-Puig, Rafael; Blanc-Mathieu, Romain; Castro Mondragon, Jaime Abraham; Ferenc, Katalin Terezia; Kumar, Vipin; Lemma, Roza Berhanu; Lucas, Jeremy; Cheneby, Jeanne; Baranasic, Damir; Khan, Aziz; Fornes, Oriol; Gundersen, Sveinung; Johansen, Morten; Hovig, Eivind; Lenhard, Boris; Sandelin, Albin; Wasserman, Wyeth W.; Parcy, François; Mathelier, Anthony.
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Research (NAR) 2023 ;Volume 52.(D1) p. D174-D182
OUS UiO Untitled
 
2022
6 Bjørklund, Sunniva; Aure, Miriam Ragle; Häkkinen, Jari; Vallon-Christersson, Johan; Kumar, Surendra; Bull Evensen, Katrine; Fleischer, Thomas; Tost, Jörg; Sahlberg, Kristine Kleivi; Mathelier, Anthony; Bhanot, Gyan; Ganesan, Shridar; Tekpli, Xavier; Kristensen, Vessela N.; Bathen, Tone Frost; Borgen, Elin; Børresen-Dale, Anne-Lise; Engebråten, Olav; Fritzman, Britt; Hartmann-Johnsen, Olaf Johan; Garred, Øystein; Geisler, Jürgen; Geitvik, Gry; Hofvind, Solveig Sand-Hanssen; Kåresen, Rolf; Langerød, Anita; Lingjærde, Ole Christian; Mælandsmo, Gunhild Mari; Naume, Bjørn; Russnes, Hege Elisabeth Giercksky; Sauer, Torill; Skjerven, Helle; Schlichting, Ellen; Sørlie, Therese.
Subtype and cell type specific expression of lncRNAs provide insight into breast cancer. Communications Biology 2022 ;Volume 5.(1) p. 1-14
VV UiT NTNU OSTFSYK KREFTREG AHUS OUS UiO Untitled
 
7 Castro Mondragon, Jaime Abraham; Aure, Miriam Ragle; Lingjærde, Ole Christian; Langerød, Anita; Martens, John WM; Børresen-Dale, Anne-Lise; Kristensen, Vessela N.; Mathelier, Anthony.
Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers. Nucleic Acids Research (NAR) 2022 ;Volume 50.(21) p. 12131-12148
UiO OUS Untitled
 
8 Ferenc, Katalin Terezia; Hsieh, Ping-Han; Mathelier, Anthony; Sandve, Geir Kjetil Ferkingstad.
Method development for the identiļ¬cation of cis-regulatory signatures of cell types. Events Norwegian Bioinformatics Days 2022; 2022-09-28 - 2022-09-30
UiO Untitled
 
9 Ferenc, Katalin Terezia; Hsieh, Ping-Han; Mathelier, Anthony; Sandve, Geir Kjetil Ferkingstad.
Method development for the identification of cis-regulatory signatures of cell types. Nordic AI Meet 2022, Nordic Young Researchers Symposium; 2022-11-14 - 2022-11-15
UiO Untitled
 
10 Ferenc, Katalin Terezia; Mathelier, Anthony; Hsieh, Ping-Han; Sandve, Geir Kjetil Ferkingstad.
Method development for the identiļ¬cation of cis-regulatory signatures of cell types. EMBL Partnership Conference; 2022-09-21 - 2022-09-23
UiO Untitled
 
11 Lemma, Roza Berhanu; Castro-Mondragon, Jaime Abraham; Mathelier, Anthony.
Large-scale investigation of noncoding elements associated with transcriptional deregulation involved in carcinogenesis. Norwegian Bioinformatics Days (NDB22); 2022-09-28 - 2022-09-30
UiO Untitled
 
12 Lemma, Roza Berhanu; Fleischer, Thomas; Martinsen, Emily; Ledsaak, Marit; Kristensen, Vessela N.; Eskeland, Ragnhild; Gabrielsen, Odd Stokke; Mathelier, Anthony.
Pioneer transcription factors are associated with the modulation of DNA methylation patterns across cancers. Epigenetics & Chromatin 2022 ;Volume 15. p. -
UiO OUS Untitled
 
13 Mathelier, Anthony.
Cis-regulatory mutations associate with transcriptional and post-transcriptional deregulation of gene regulatory programs in cancers. Cancer Genomics and Epitranscriptomics: from the bench to the clinic; 2022-11-29 - 2022-12-02
UiO Untitled
 
14 Rauluseviciute, Ieva; Castro-Mondragon, Jaime A.; Mathelier, Anthony.
Identification of transcription factor co-binding partners with non-negative matrix factorization. 4th EMBL partnership conference; 2022-09-21 - 2022-09-23
UiO Untitled
 
15 Rauluseviciute, Ieva; Castro-Mondragon, Jaime A.; Mathelier, Anthony.
Identification of transcription factor co-binding patterns with non-negative matrix factorization. Norwegian Bioinformatics Days; 2022-09-28 - 2022-09-30
UiO Untitled
 
16 Rauluseviciute, Ieva; Castro-Mondragon, Jaime A.; Mathelier, Anthony.
Identification of transcription factor co-binding patterns with non-negative matrix factorization. Norwegian Bioinformatics Days; 2022-09-28 - 2022-09-30
UiO Untitled
 
17 Rossini, Roberto; Kumar, Vipin; Mathelier, Anthony; Rognes, Torbjørn; Paulsen, Jonas.
MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions. Genome Biology 2022 ;Volume 23.(1) p. -
UiO OUS Untitled
 
18 Rossini, Roberto; Kumar, Vipin; Rognes, Torbjorn; Mathelier, Anthony; Paulsen, Jonas.
MoDLE: High-performance stochastic modeling of DNA loop extrusion interactions. bioRxiv 2022
UiO UiB Untitled
 
19 Strømme, Jonas Meier; Johannessen, Bjarne; Kidd, Susanne Gundersen; Bogaard, Mari; Carm, Kristina Totland; Zhang, Xiaokang; Sveen, Anita; Mathelier, Anthony; Lothe, Ragnhild Adelheid; Axcrona, Ulrika; Axcrona, Karol; Skotheim, Rolf I..
Expressed prognostic biomarkers for primary prostate cancer independent of multifocality and transcriptome heterogeneity. Cancer Gene Therapy 2022 ;Volume 29.(8-9) p. 1276-1284
OUS UiO AHUS Untitled
 
2021
20 Aure, Miriam Ragle; Fleischer, Thomas; Bjørklund, Sunniva; Ankill, Jørgen; Castro Mondragón, Jaime Abraham; Børresen-Dale, Anne-Lise; Tost, Jörg; Sahlberg, Kristine Kleivi; Mathelier, Anthony; Tekpli, Xavier; Kristensen, Vessela N..
Crosstalk between microRNA expression and DNA methylation drives the hormone-dependent phenotype of breast cancer. Genome Medicine 2021 ;Volume 13:72. p. 1-21
UiO OUS VV AHUS Untitled
 
21 Castro Mondragon, Jaime Abraham; Riudavets Puig, Rafael; Rauluseviciute, Ieva; Lemma, Roza Berhanu; Turchi, Laura; Blanc-Mathieu, Romain; Lucas, Jeremy; Boddie, Paul; Khan, Aziz; Manosalva Perez, Nicolas; Fornes, Oriol; Leung, Tiffany; Aguirre, Alejandro; Hammal, Fayrouz; Schmelter, Daniel; Baranasic, Damir; Ballester, Benoit; Sandelin, Albin; Lenhard, Boris; Vandepoele, Klaas; Wasserman, Wyeth W.; Parcy, François; Mathelier, Anthony.
JASPAR 2022: the 9th release of the open-acess database of transcription factor binding profiles. Nucleic Acids Research (NAR) 2021
UiO Untitled
 
22 Korecki, Andrea J; Cueva-Vargas, Jorge; Fornes, Oriol; Agostinone, Jessica; Farkas, Rachelle; Hickmott, Jack W; Ling Lam, Siu; Mathelier, Anthony; Zhou, Michelle; Wasserman, Wyeth W.; Di Polo, Adriana; Simpson, Elizabeth M.
Human MiniPromoters for ocular-rAAV expression in ON bipolar, cone, corneal, endothelial, Müller glial, and PAX6 cells. Gene Therapy 2021
UiO Untitled
 
23 Mathelier, Anthony.
Insights into the interplay between transcription factor binding and cis-regulatory disruptions in cancers. Nanotumor Bioinformatics webinar series; 2021-12-03 - 2021-12-03
UiO Untitled
 
24 Mileti, Enrichetta; Kwok, Kelvin H.M.; Andersson, Daniel P.; Mathelier, Anthony; Raman, Amitha; Bäckdahl, Jesper; Jalkanen, Jutta; Massier, Lucas; Thorell, Anders; Gao, Hui; Arner, Peter; Mejhert, Niklas; Daub, Carsten O.; Riden, Mikael.
Human White Adipose Tissue Displays Selective Insulin Resistance in the Obese State. Diabetes 2021 ;Volume 70.(7) p. 1486-1497
UiO OUS Untitled
 
25 Riudavets Puig, Rafael; Boddie, Paul; Khan, Aziz; Castro Mondragon, Jaime Abraham; Mathelier, Anthony.
UniBind: maps of high-confidence direct TF-DNA interactions across nine species. BMC Genomics 2021
UiO Untitled
 
26 Riudavets, Rafael; Boddie, Paul; Khan, Aziz; Castro Mondragon, Jaime Abraham; Mathelier, Anthony.
UniBind: maps of high-confidence direct TF-DNA interactions across nine species. BMC Genomics 2021 ;Volume 22.(482) p. 1-17
UiO OUS Untitled
 
2020
27 Fromm, Bastian; Domanska, Diana; Høye, Eirik; Ovchinnikov, Vladimir; Kang, Wenjing; Aparicio-Puerta, Ernesto; Johansen, Morten; Flatmark, Kjersti; Mathelier, Anthony; Hovig, Eivind; Hackenberg, Michael; Friedländer, Marc R; Peterson, Kevin J.
Erratum: MirGeneDB 2.0: The metazoan microRNA complement (Nucleic Acids Research (2019) DOI: 10.1093/nar/gkz885). Nucleic Acids Research (NAR) 2020 ;Volume 48.(1) p. D1172-
OUS UiO Untitled
 
28 Khan, Aziz; Riudavets Puig, Rafael; Boddie, Paul; Mathelier, Anthony.
BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences.. Bioinformatics 2020
UiO Untitled
 
29 Pladsen, Arne Valebjørg; Nilsen, Gro; Rueda, Oscar M.; Aure, Miriam Ragle; Borgan, Ørnulf; Liestøl, Knut; Vitelli, Valeria; Frigessi Di Rattalma, Arnoldo; Langerød, Anita; Mathelier, Anthony; Engebråten, Olav; Kristensen, Vessela N.; Wedge, David C.; Van Loo, Peter; Caldas, Carlos; Børresen-Dale, Anne-Lise; Russnes, Hege Elisabeth Giercksky; Lingjærde, Ole Christian.
DNA copy number motifs are strong and independent predictors of survival in breast cancer. Communications Biology 2020 ;Volume 3. p. -
OUS UiO Untitled
 
2019
30 Fornes, Oriol; Castro Mondragón, Jaime Abraham; Khan, Aziz; Robin van der, Lee; Zhang, Xi; A. Richmond, Phillip; P. Modi, Bhavi; Correard, Solenne; Gheorghe, Marius; Baranasic, Damir; Santana-Garcia, Walter; Tan, Ge; Cheneby, Jeanne; Ballester, Benoit; Parcy, François; Sandelin, Albin; Lenhard, Boris; Wasserman, Wyeth W.; Mathelier, Anthony.
JASPAR 2020: update of the open-access database of transcription factor binding profiles. Nucleic Acids Research (NAR) 2019 ;Volume 48. p. 87-92
UiB UiO OUS Untitled
 
31 Fromm, Bastian; Domanska, Diana Ewa; Høye, Eirik; Ovchinnikov, Vladimir; Kang, Wenjing; Aparicio-Puerta, Ernesto; Johansen, Morten; Flatmark, Kjersti; Mathelier, Anthony; Hovig, Eivind; Hackenberg, Michael; Friedländer, Marc R.; Peterson, Kevin J..
MirGeneDB 2.0: the metazoan microRNA complement. Nucleic Acids Research (NAR) 2019 ;Volume 48.(D1) p. D132-D141
OUS UiO Untitled
 
32 Gheorghe, Marius; Sandve, Geir Kjetil Ferkingstad; Khan, Aziz; Chèneby, Jeanne; Ballester, Benoit; Mathelier, Anthony.
Erratum: A map of direct TF-DNA interactions in the human genome (Nucleic acids research (2019) 47 4 (e21)). Nucleic Acids Research (NAR) 2019 ;Volume 47.(14) p. 7715-
UiO Untitled
 
33 Gheorghe, Marius; Sandve, Geir Kjetil; Khan, Aziz; Cheneby, Jeanne; Ballester, Benoit; Mathelier, Anthony.
A map of direct TF–DNA interactions in the human genome. Nucleic Acids Research (NAR) 2019 ;Volume 47.(4) p. e21-
UiO OUS Untitled
 
34 Ha, Thomas J.; Zhang, Peter G.Y.; Robert, Remi; Yeung, Joanna; Swanson, Douglas J.; Mathelier, Anthony; Wasserman, Wyeth W.; Im, Sujin; Itoh, Masayoshi; Kawaji, Hideya; Lassmann, Timo; Daub, Carsten O.; Arner, Erik; Carninci, Piero; Hayashizaki, Yoshihide; Forrest, Alistair R.R.; Goldowitz, Daniel.
Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis. BMC Genomics 2019 ;Volume 20.(718) p. 1-17
UiO OUS Untitled
 
35 Itkonen, Harri; Urbanucci, Alfonso; Sara ES, Martin; Khan, Aziz; Mathelier, Anthony; Thiede, Bernd; Walker, Suzanne; Mills, Ian Geoffrey.
High OGT activity is essential for MYC-driven proliferation of prostate cancer cells. Theranostics 2019 ;Volume 9.(8) p. 2183-2197
UiO OUS Untitled
 
36 Korecki, Andrea J; Hickmott, Jack W; Lam, Siu Ling; Dreolini, Lisa; Mathelier, Anthony; Baker, Oliver; Kuehne, Claudia; Bonaguro, Russell J; Smith, Jillian; Tan, Chin-Vern; Zhou, Michelle; Goldowitz, Daniel; Deussing, Jan M; Stewart, A. Francis; Wasserman, Wyeth W.; Holt, Robert A; Simpson, Elizabeth M.
Twenty-seven tamoxifen-inducible icre-driver mouse strains for eye and brain, including seventeen carrying a new inducible-first constitutive-ready allele. Genetics 2019 ;Volume 211.(4) p. 1155-1177
UiO Untitled
 
37 Salvatore, Stefania; Rand, Knut Dagestad; Grytten, Ivar; Ferkingstad, Egil; Domanska, Diana; Holden, Lars; Gheorghe, Marius; Mathelier, Anthony; Glad, Ingrid Kristine; Sandve, Geir Kjetil.
Beware the Jaccard: the choice of similarity measure is important and non-trivial in genomic colocalisation analysis. Briefings in Bioinformatics 2019 p. 1-8
NR UiO OUS Untitled
 
2018
38 Fornes, Oriol; Gheorghe, Marius; Richmond, Phillip A.; Arenillas, David J.; Wasserman, Wyeth W.; Mathelier, Anthony.
MANTA2, update of the Mongo database for the analysis of transcription factor binding site alterations. Scientific Data 2018 ;Volume 5:180141. p. 1-7
UiO OUS Untitled
 
39 Khan, Aziz; Mathelier, Anthony; Zhang, Xuegong.
Super-enhancers are transcriptionally more active and cell type-specific than stretch enhancers. Epigenetics 2018 ;Volume 13.(9) p. 910-922
UiO OUS Untitled
 
40 Khan, Aziz; Montenegro-Montero, Alejandro; Mathelier, Anthony.
Put science first and formatting later. EMBO Reports 2018 p. -
UiO Untitled
 
41 Lecellier, Charles-Henri; Wasserman, Wyeth W.; Mathelier, Anthony.
Human enhancers harboring specific sequence composition, activity, and genome organization are linked to the immune response. Genetics 2018 ;Volume 209.(4) p. 1055-1071
UiO OUS Untitled
 
42 Sugiaman-Trapman, Debora; Vitezic, Morana; Jouhilahti, Eeva-Mari; Mathelier, Anthony; Lauter, Gilbert; Misra, Sougat; Daub, Carsten O.; Kere, Juha; Swoboda, Peter.
Characterization of the human RFX transcription factor family by regulatory and target gene analysis. BMC Genomics 2018 ;Volume 19.(181)
UiO OUS Untitled
 
2017
43 Lizio, Marina; Harshbarger, Jayson; Abugessaisa, Imad; Noguchi, Shuei; Kondo, Atsushi; Severin, Jessica; Mungall, Chris; Arenillas, David; Mathelier, Anthony; Medvedeva, Yulia; Lennartsson, Andreas; Drabløs, Finn Sverre; Ramilowski, Jordan; Rackham, Owen; Gough, Julian; Andersson, Robin; Sandelin, Albin; Ienasescu, Hans; Ono, Hiromasa; Bono, Hidemasa; Hayashizaki, Yoshihide; Carninci, Piero; Forrest, Alistair R.R.; Kasukawa, Takeya; Kawaji, Hideya.
Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals. Nucleic Acids Research (NAR) 2017 ;Volume 45.(D1) p. D737-D743
NTNU OUS UiO Untitled
 
44 Cheneby, J; Gheorghe, Marius; Artufel, M; Mathelier, Anthony; Ballester, B.
ReMap 2018: an updated atlas of regulatory regions from an integrative analysis of DNA-binding ChIP-seq experiments. Nucleic Acids Research (NAR) 2017 ;Volume 46.(D1) p. D267-D275
UiO Untitled
 
45 de rie, D; Abugesaissa, I; Alam, T; Arner, E; Ashoor, H; Åström, G; Babina, M; Bertin, N; Burroughs, AM; Carlisle, AJ; Daub, CO; Detmar, M; Daviatiiarov, R; Fort, A; Gebhard, C; Goldowitz, D; Guhl, S; Ha, TJ; Harschbager, J; Hasegawa, R; Hashimoto, K; Herlyn, M; Heutink, P; Hitchens, KJ; Hong, CC; Huang, E; Ishizu, Y; Kai, C; Kasukawa, T; Klinken, P; Lassmann, T; Lecellier, CH; Lee, W; Lizio, M; Makeev, V; Mathelier, Anthony; Medvededa, YA; Mejhert, N; Mungall, CJ; Noma, S; Ohshima, M; Okada-Hatakeyama, M; Persson, H; Rizzu, P; Roudnicky, F; Sætrom, Pål; Sato, H; Severin, J; Shin, JW; Swoboda, RK; Tarui, H; Toyoda, H; Vitting-Serup, K; Winterinham, L; Yamaguchi, Y; Yasuzawa, K; Yoneda, M; Yumoto, N; Zabierowsky, S; Zang, PG; Wells, CA; Summers, KM; Kawaii, H; Sandelin, A; Rehli, M; Hayashisaki, Y; Carninci, P; Forrest, ARR; de Hoon, MJL; De Hoon, Michiel J L.
An integrated expression atlas of miRNAs and their promoters in human and mouse. Nature Biotechnology 2017 ;Volume 35.(9) p. 872-878
NTNU Untitled
 
46 Fleischer, Thomas; Tekpli, Xavier; Mathelier, Anthony; Wang, Shixiong; Nebdal, Daniel J.H.; Dhakal, Hari Prasad; Sahlberg, Kristine Kleivi; Schlichting, Ellen; Børresen-Dale, Anne-Lise; Borgen, Elin; Naume, Bjørn; Eskeland, Ragnhild; Frigessi, Arnoldo; Tost, Jörg; Rodriguez, Antoni Hurtado; Kristensen, Vessela N..
DNA methylation at enhancers identifies distinct breast cancer lineages. Nature Communications 2017 ;Volume 8.(1379)
UiO VV OUS AHUS Untitled
 
47 Khan, Aziz; Fornes, O; Stigliani, A; Gheorghe, Marius; Castro Mondragón, Jaime Abraham; van der Lee, R; Bessy, A; Cheneby, J; Kulkarni, SR; Tan, G; Baranasic, D; Arenillas, DJ; Sandelin, A; Vandepoele, K; Lenhard, B; Ballester, B; Wassermann, WW; Parcy, F; Mathelier, Anthony.
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Research (NAR) 2017 ;Volume 46.(1) p. D260-D266
UiO Untitled
 
48 Khan, Aziz; Mathelier, Anthony.
Intervene: a tool for intersection and visualization of multiple gene or genomic region sets. BMC Bioinformatics 2017 ;Volume 18.(287)
UiO OUS Untitled
 
49 Khan, Aziz; Mathelier, Anthony.
JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics 2017 ;Volume 34.(9) p. 1612-1614
UiO Untitled
 
2016
50 Arenillas, David J.; Forrest, Alistair R.R.; Kawaji, Hideya; Lassmann, Timo; Wasserman, Wyeth W.; Mathelier, Anthony.
CAGEd-oPOSSUM: Motif enrichment analysis from CAGE-derived TSSs. Bioinformatics 2016 ;Volume 32.(18) p. 2858-2860
UiO OUS Untitled
 
    Show next list