Current Research Information SysTem In Norway
 
 

 Norsk versjon


 
Mainpage
Research results/NVI
Researchers
Projects
Research units
Log in
About Cristin
 
 
   
Back to search     Short format     Full format    
Export to


Showing results 1-50 of 88 << Previous 1 2    Next >>

2020
1 Arnold, Brian; Sohail, Mashaal; Wadsworth, Crista; Corander, Jukka; Hanage, William P.; Sunyaev, Shamil R.; Grad, Yonatan H..
Fine-Scale Haplotype Structure Reveals Strong Signatures of Positive Selection in a Recombining Bacterial Pathogen. Molecular biology and evolution 2020 ;Volume 37.(2) p. 417-428
UiO Untitled
 
2 Arredondo-Alonso, Sergio; Top, Janetta; McNally, Alan; Puranen, Santeri; Pesonen, Maiju; Pensar, Johan; Marttinen, Pekka; Braat, Johanna C.; Rogers, M.R.C.; van Schaik, Willem; Kaski, Samuel; Willems, Rob; Corander, Jukka; Schürch, Anita C..
Plasmids shaped the recent emergence of the major nosocomial pathogen Enterococcus faecium. mBio 2020 ;Volume 11.(1) p. -
UiO Untitled
 
3 Azarian, Taj; Martinez, Pamela P.; Arnold, Brian; Qiu, Xueting; Grant, Lindsay R.; Corander, Jukka; Fraser, Christophe; Croucher, Nicholas J.; Hammitt, Laura L.; Reid, Raymond; Santosham, Mathuram; Weatherholtz, Robert C.; Bentley, Stephen D.; O’Brien, Katherine L.; Lipsitch, Marc; Hanage, William P..
Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae. PLoS Biology 2020 ;Volume 18.(10) p. -
UiO Untitled
 
4 Colijn, Caroline; Corander, Jukka; Croucher, Nicholas J..
Designing ecologically optimized pneumococcal vaccines using population genomics. Nature Microbiology 2020 ;Volume 5.(3) p. 473-485
UiO Untitled
 
5 Corander, Jukka.
A high-throughput microbial growth data assembly and analysis protocol to elucidate the strain variability of Listeria monocytogenes in NaCl stress. Applied and Environmental Microbiology 2020
UiO Untitled
 
6 Corander, Jukka.
Adaptive Approximate Bayesian Computation tolerance selection. Bayesian Analysis 2020
UiO Untitled
 
7 Corander, Jukka.
Genomic signatures of domestication in Old World camels. Communications Biology 2020
UiO Untitled
 
8 Corander, Jukka.
gplas: a comprehensive tool for plasmid analysis using short-read graphs. Bioinformatics 2020
UiO Untitled
 
9 Corander, Jukka.
Improved prediction of bacterial genotype-phenotype associations using interpretable pangenome-spanning regressions. mBio 2020
UiO Untitled
 
10 Corander, Jukka.
Likelihood-free inference by ratio estimation. Bayesian Analysis 2020
UiO Untitled
 
11 Corander, Jukka.
New Pathogenesis Mechanisms and Translational Leads Identified by Multidimensional Analysis of Necrotizing Myositis in Primates. mBio 2020
UiO Untitled
 
12 Corander, Jukka.
Nucleotide diversity of functionally different groups of immune response genes in Old World camels based on newly annotated and reference-guided assemblies. BMC Genomics 2020
UiO Untitled
 
13 Corander, Jukka.
PYLFIRE: Python implementation of likelihood-free inference by ratio estimation. Wellcome Open Research 2020
UiO Untitled
 
14 Corander, Jukka.
The binding mechanism of the virulence factor Streptococcus suis adhesin P subtype to globotetraosylceramide is associated with systemic disease. Journal of Biological Chemistry 2020
UiO Untitled
 
15 Pensar, Johan; Xu, Yingying; Puranen, Juha Santeri; Pesonen, Maiju; Kabashima, Yoshiyuki; Corander, Jukka.
High-dimensional structure learning of binary pairwise Markov networks: A comparative numerical study. Computational Statistics & Data Analysis 2020 ;Volume 141. p. 62-76
UiO Untitled
 
16 Tonkin-Hill, Gerry; MacAlasdair, Neil; Ruis, Christopher; Weimann, Aaron; Horesh, Gal; Lees, John A.; Gladstone, Rebecca Ashley; Lo, Stephanie; Beaudoin, Christopher; Floto, R. Andres; Frost, Simon D.W.; Corander, Jukka; Bentley, Stephen D.; Parkhill, Julian.
Producing polished prokaryotic pangenomes with the Panaroo pipeline. Genome Biology 2020 ;Volume 21. p. 1-21
UiO Untitled
 
17 Top, Janetta; Arredondo-Alonso, Sergio; Schürch, Anita C.; Puranen, Santeri; Pesonen, Maiju; Pensar, Johan; Willems, Rob J.L.; Corander, Jukka.
Genomic rearrangements uncovered by genome-wide co-evolution analysis of a major nosocomial pathogen, Enterococcus faecium. Microbial Genomics 2020 ;Volume 6.(12) p. 1-8
UiO Untitled
 
2019
18 Abudahab, Khalil; Prada, Joaquín; Yang, Zhirong; Bentley, Stephen; Croucher, Nicholas; Corander, Jukka; Anensen, David.
PANINI: Pangenome Neighbour Identification for Bacterial Populations. Microbial Genomics 2019 ;Volume 5.(4)
UiO Untitled
 
19 Lu, Yao; Corander, Jukka; Yang, Zhirong.
Doubly Stochastic Neighbor Embedding on Spheres. Pattern Recognition Letters 2019 ;Volume 128. p. 100-106
NTNU UiO Untitled
 
20 Arredondo-Alonso, Sergio; Rogers, Malbert R.C.; Braat, Johanna C.; Verschuuren, Tess D.; Top, Janetta; Corander, Jukka; Willems, Rob J.L.; Schürch, Anita C..
Corrigendum: Mlplasmids: A user-friendly tool to predict plasmid-and chromosome-derived sequences for single species, (Microbial Genomics), (2018), 4, 10.1099/mgen.0.000224. Microbial Genomics 2019 ;Volume 5.(1)
UiO Untitled
 
21 Chiner-Oms, Álvaro; Sanchez-Buso, Leonor; Corander, Jukka; Gagneux, Sébastien; Harris, Simon R; Young, D; Gonzalez-Candelas, Fernando; Comas, Inaki.
Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex. Science Advances 2019 ;Volume 5.(6)
UiO Untitled
 
22 Colclough, Abigail; Corander, Jukka; Sheppard, Samuel K.; Bayliss, S. C.; Vos, Michiel.
Patterns of cross-resistance and collateral sensitivity between clinical antibiotics and natural antimicrobials. Evolutionary Applications 2019 ;Volume 12.(5) p. 878-887
UiO Untitled
 
23 Corander, Jukka; Hyttinen, Antti; Kontinen, Juha; Pensar, Johan; Väänänen, Jouko.
A logical approach to context-specific independence. Annals of Pure and Applied Logic 2019 ;Volume 170.(9) p. 975-992
UiO Untitled
 
24 Cremers, Amelieke J. H.; Mobegi, Fredrick M.; Van Der Gaast-De Jongh, Christa; Van Weert, Michelle; Van Opzeeland, Fred J.; Vehkala, Minna; Knol, Mirjam J.; Bootsma, Hester J.; Välimäki, Niko; Croucher, Nicholas J.; Meis, Jacques F.; Bentley, Stephen; van Hijum, Sacha A.F.T.; Corander, Jukka; Zomer, Aldert L.; Ferwerda, Gerben; De Jonge, Marien I..
The contribution of genetic variation of streptococcus pneumoniae to the clinical manifestation of invasive pneumococcal disease. Clinical Infectious Diseases 2019 ;Volume 68.(1) p. 61-69
UiO Untitled
 
25 Elbers, Jean P; Rogers, Mark F; Perelman, Polina L; Proskuryakova, Anastasia A; Serdyukova, Natalia A; Johnson, Warren E.; Horin, Petr; Corander, Jukka; Murphy, David; Burger, Pamela A.
Improving Illumina assemblies with Hi-C and long reads: An example with the North African dromedary. Molecular Ecology Resources 2019 ;Volume 19.(4) p. 1015-1026
UiO Untitled
 
26 Gladstone, Rebecca A; Lo, Stephanie W; Lees, John A; Croucher, Nicholas J.; van Tonder, Andries J.; Corander, Jukka; Page, Andrew J; Marttinen, Pekka; Bentley, Leon J.; Ochoa, Theresa J.; Ho, Pak Leung; du Plessis, Mignon; Cornick, Jennifer E.; Kwambana-Adams, Brenda; Benisty, Rachel; Nzenze, Susan A.; Madhi, Shabir A.; Hawkins, Paulina A.; Everett, Dean B.; Antonio, Martin; Dagan, Ron; Klugman, Keith; von Gottberg, Anne; McGee, Lesley; Breiman, Robert F.; Bentley, Stephen D..
International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact. EBioMedicine 2019 ;Volume 43. p. 338-346
UiO Untitled
 
27 Gouliouris, Theodore; Raven, Kathy E; Moradigaravand, Danesh; Ludden, Catherine; Coll, Francesc; Blane, Beth; Naydenova, Plamena; Horner, Carolyne; Brown, Nicholas M; Corander, Jukka; Limmathurotsakul, Direk; Parkhill, Julian; Peacock, Sharon J..
Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment. Genome Research 2019 ;Volume 29.(4) p. 626-634
UiO Untitled
 
28 Kachroo, Priyanka; Eraso, Jesus M.; Beres, Stephen B.; Olsen, Randall J.; Zhu, Luchang; Nasser, Waleed; Bernard, Paul E.; Cantu, Conception C.; Saavedra, Matthew Ojeda; Arredondo, María José; Strope, Benjamin; Do, Hackwon; Kumaraswami, Muthiah; Vuopio, Jaana; Gröndahl-Yli-Hannuksela, Kirsi; Kristinsson, Karl G.; Gottfredsson, Magnus; Pesonen, Maiju; Pensar, Johan; Davenport, Emily R.; Clark, Andrew G.; Corander, Jukka; Caugant, Dominique A; Gaini, Shahin; Magnussen, Marita Debess; Kubiak, Samantha L.; Nguyen, Hoang A. T.; Long, S. Wesley; Porter, Adeline R.; DeLeo, Frank R.; Musser, James M..
Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis. Nature Genetics 2019 ;Volume 51.(3) p. 548-559
FHI UiO Untitled
 
29 Lees, John A; Harris, Simon R; Tonkin-Hill, Gerry; Gladstone, Rebecca A; Lo, Stephanie W; Weiser, Jeffrey N; Corander, Jukka; Bentley, Stephen D; Croucher, Nicholas J.
Fast and flexible bacterial genomic epidemiology with PopPUNK.. Genome Research 2019 ;Volume 29.(2) p. 304-316
UiO Untitled
 
30 Léon-Sampedro, Ricardo; del Campo, Rosa; Rodriguez-Baños, Mercedes; Lanza, Val F.; Pozuelo, María José; Francés-Cuesta, Carlos; Tedim, Ana P.; Freitas, Ana R.; Novais, Carla; Peixe, Luísa; Willems, Rob J.L.; Corander, Jukka; González Candelas, Fernando; Baquero, Fernando; Coque, Teresa M..
Phylogenomics of Enterococcus faecalis from wild birds: new insights into host-associated differences in core and accessory genomes of the species. Environmental Microbiology 2019 ;Volume 21.(8) p. 3046-3062
UiO Untitled
 
31 Lintusaari, Jarno; Blomstedt, Paul; Rose, Brittany; Sivula, Tuomas; Gutmann, Michael U.; Kaski, Samuel; Corander, Jukka.
Resolving outbreak dynamics using approximate bayesian computation for stochastic birth-death models. Wellcome Open Research 2019 ;Volume 4.(14)
FHI UiO Untitled
 
32 McNally, Alan; Kallonen, Teemu; Connor, Christopher; Abudahab, Khalil; Aanensen, David M.; Horner, Carolyne S; Peacock, Sharon J.; Parkhill, Julian; Croucher, Nicholas J.; Corander, Jukka.
Diversification of colonization factors in a multidrug-resistant escherichia coli lineage evolving under negative frequency- dependent selection. mBio 2019 ;Volume 10.(2)
UiO Untitled
 
33 Merla, Cristina; Rodrigues, Carla; Passet, Virginie; Corbella, Marta; Thorpe, Harry A; Kallonen, Teemu; Zong, Zhiyong; Marone, Piero; Bandi, Claudio; Sassera, Davide; Corander, Jukka; Feil, Edward J.; Brisse, Sylvain.
Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.. Frontiers in Microbiology 2019 ;Volume 10.(2360) p. 1-9
UiO Untitled
 
34 Pensar, Johan; Puranen, Santeri; Arnold, Brian; MacAlasdair, Neil; Kuronen, Juri; Tonkin-Hill, Gerry; Pesonen, Maiju; Xu, Yingying; Sipola, Aleksi; Sanchez-Buso, Leonor; Lees, John A; Chewapreecha, Claire; Bentley, Stephen D; Harris, Simon R; Parkhill, Julian; Croucher, Nicholas J; Corander, Jukka.
Genome-wide epistasis and co-selection study using mutual information. Nucleic Acids Research 2019 ;Volume 47.(18) p. 1-14
UiO Untitled
 
35 Sanchez-Buso, Leonor; Golparian, Daniel; Corander, Jukka; Grad, Yonatan H.; Ohnishi, Makoto; Flemming, Rebecca; Parkhill, Julian; Bentley, Stephen D; Unemo, Magnus; Harris, Simon R.
The impact of antimicrobials on gonococcal evolution. Nature Microbiology 2019
UiO Untitled
 
36 Schaufler, Katharina; Semmler, Torsten; Wieler, Lothar H.; Trott, Darren J.; Pitout, Johann; Peirano, Gisele; Bonnedahl, Jonas; Dolejska, Monika; Literak, Ivan; Fuchs, Stephan; Ahmed, Niyaz; Grobbel, Mirjam; Torres, Carmen; McNally, Alan; Pickard, Derek; Ewers, Christa; Croucher, Nicholas J.; Corander, Jukka; Guenther, Sebastian.
Genomic and functional analysis of emerging virulent and multidrug-resistant Escherichia coli lineage sequence type 648. Antimicrobial Agents and Chemotherapy 2019 ;Volume 63:e00243-19.(6) p. 1-12
UiO Untitled
 
37 Smet, Annemieke; Yahara, Koji; Rossi, Mirko; Tay, Alfred; Backert, Steffen; Ensser, Armin; Fox, James G.; Flahou, Bram; Ducatelle, Richard; Haesebrouck, Freddy; Corander, Jukka.
Correction: Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence (The ISME Journal, (2018), 12, 10, (2518-2531), 10.1038/s41396-018-0199-5). The ISME Journal 2019
UiO Untitled
 
38 Tadei, Alessandro; Pensar, Johan; Corander, Jukka; Finnilä, Katarina; Santtila, Pekka; Antfolk, Jan.
A Bayesian Decision-Support Tool for Child Sexual Abuse Assessment and Investigation. Sexual abuse. A Journal of Research and Treatment 2019 ;Volume 31.(4) p. 374-396
UiO Untitled
 
39 Todorovic, Milica; Gutmann, Michael U.; Corander, Jukka; Rinke, Patrick.
Bayesian inference of atomistic structure in functional materials. npj Computational Materials 2019 ;Volume 5.(1)
UiO Untitled
 
40 Tonkin-Hill, Gerry; Lees, John A; Bentley, Stephen D; Frost, Simon DW; Corander, Jukka.
Fast hierarchical Bayesian analysis of population structure. Nucleic Acids Research 2019 ;Volume 47.(11) p. 5539-5549
UiO Untitled
 
41 Wailan, Alexander M.; Coll, Francesc; Heinz, Eva; Tonkin-Hill, Gerry; Corander, Jukka; Feasey, Nicholas A.; Thomson, Nicholas R..
rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic tree. Microbial Genomics 2019 ;Volume 5.(4)
UiO Untitled
 
2018
42 Arnold, Brian; Gutmann, Michael U.; Grad, Yonatan H.; Sheppard, Samuel K.; Corander, Jukka; Lipsitch, Marc; Hanage, William P..
Weak epistasis may drive adaptation in recombining bacteria. Genetics 2018 ;Volume 208.(3) p. 1247-1260
UiO Untitled
 
43 Arredondo-Alonso, Sergio; Rogers, Malbert R.C.; Braat, Johanna C.; Verschuuren, Tess D.; Top, Janetta; Corander, Jukka; Willems, Rob J.L.; Schürch, Anita C..
mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species. Microbial Genomics 2018 ;Volume 4.(11) p. 1-15
UiO Untitled
 
44 Flahou, Bram; Rossi, Mirko; Bakker, Jaco; Langermans, Jan AM; Heuvelman, Edwin; Solnick, Jay V; Martin, Miriam E; O'Rourke, Jani; Ngoan, Le Duc; Hoa, Nguyen Xuan; Nakamura, Masahiko; Øverby, Anders; Matsui, Hidenori; Ota, Hiroyoshi; Matsumoto, Takehisa; Foss, Dennis L; Kopta, Laurice A; Omotosho, Oladipo; Franciosini, Maria Pia; Casagrande Proietti, Patrizia; Guo, Aizhen; Liu, Han; Borilova, Gabriela; Bracarense, Ana Paula; Linden, Sara K; De Bruyckere, Sofie; Zhang, Guangzhi; De Witte, Chloe; Smet, Annemieke; Pasmans, Frank; Ducatelle, Richard; Corander, Jukka; Haesebrouck, Freddy.
Evidence for a primate origin of zoonotic Helicobacter suis colonizing domesticated pigs. The ISME Journal 2018 ;Volume 12.(1) p. 77-86
UiO Untitled
 
45 Gouliouris, Theodore; Raven, Kathy E; Ludden, Catherine; Blane, Beth; Corander, Jukka; Horner, Carolyne S; Hernandez-Garcia, Juan; Wood, Paul; Hadjirin, Nazreen F; Radakovic, Milorad; Holmes, Mark; de Goffau, Marcus; Brown, Nicholas M; Parkhill, Julian; Peacock, Sharon J..
Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom. mBio 2018 ;Volume 9.(6)
UiO Untitled
 
46 Lees, John A; Galardini, Marco; Bentley, Stephen D; Weiser, Jeffrey N; Corander, Jukka.
pyseer: a comprehensive tool for microbial pangenome-wide association studies. Bioinformatics 2018 ;Volume 34.(24) p. 4310-4312
UiO Untitled
 
47 Lin, Xiaoxi B.; Wang, Tuo; Stothard, Paul; Corander, Jukka; Wang, Jun; Baines, John F.; Knowles, Sarah C.L.; Baltrūnaitė, Laima; Tasseva, Guergana; Schmaltz, Robert; Tollenaar, Stephanie; Cody, Liz A.; Grenier, Theodore; Wu, Wei; Ramer-Tait, Amanda E.; Walter, Jens.
The evolution of ecological facilitation within mixed-species biofilms in the mouse gastrointestinal tract. The ISME Journal 2018 ;Volume 12.(11) p. 2770-2784
UiO Untitled
 
48 Lintusaari, Jarno; Vuollekoski, Henri; Kangasraasio, Antti; Skyten, Kusti; Jarvenpaa, Marko; Marttinen, Pekka; Gutmann, Michael U.; Vehtari, Aki; Corander, Jukka; Kaski, Samuel.
ELFI: Engine for Likelihood-Free Inference. Journal of machine learning research 2018 ;Volume 19.(16) p. 1-7
UiO Untitled
 
49 Meric, Guillaume; Mageiros, Leonardos; Pensar, Johan; Laabei, Maisem; Yahara, Koji; Pascoe, Ben; Kittiwan, Nattinee; Tadee, Phacharaporn; Post, Virginia; Lamble, Sarah; Bowden, Rory; Bray, James E.; Morgenstern, Mario; Jolley, Keith A.; Maiden, Martin CJ; Feil, Edward J.; Didelot, Xavier; Miragaia, Maria; de Lencastre, Herminia; Moriarty, T Fintan; Rohde, Holger; Massey, Ruth; Mack, Dietrich; Corander, Jukka; Sheppard, Samuel K.
Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis. Nature Communications 2018 ;Volume 9.(1)
UiO Untitled
 
50 Meric, Guillaume; McNally, Alan; Pessia, Alberto; Mourkas, Evangelos; Pascoe, Ben; Mageiros, Leonardos; Vehkala, Minna; Corander, Jukka; Sheppard, Samuel K.
Convergent amino acid signatures in polyphyletic campylobacter jejuni subpopulations suggest human niche tropism. Genome Biology and Evolution 2018 ;Volume 10.(3) p. 763-774
UiO Untitled
 
    Show next list