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Showing results 1-35 of 35
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2021
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Johannsen, Christina; Koehler, Christian; Thiede, Bernd. Comparison of LFQ and IPTL for Protein Identification and Relative Quantification. Molecules 2021 ;Volume 26.(17) p. - UiO
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Pizzi, Eleonora; Halvorsen, Trine Grønhaug; Koehler, Christian; Reubsaet, Leon. Next-Generation Dried Blood Spot Samplers for Protein Analysis: Describing Trypsin-Modified Smart Sampling Paper. Separations 2021 ;Volume 8.(5) UiO
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Thiede, Bernd; Koehler, Christian. An Approach for Triplex-IPTL. I: Quantitative Methods in Proteomics. Humana Press 2021 ISBN 978-1-0716-1023-7. p. 133-144 UiO
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2019
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Koehler, Christian; Thiede, Bernd. Predominant cleavage of proteins N-terminal to serines and threonines using scandium(III) triflate. JBIC Journal of Biological Inorganic Chemistry 2019 ;Volume 25. p. 61-66 UiO
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2018
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Bollineni, Ravi Chand; Koehler, Christian; Gislefoss, Randi Elin; Anonsen, Jan Haug; Thiede, Bernd. Author Correction: Large-scale intact glycopeptide identification by Mascot database search. Scientific Reports 2018 ;Volume 8. UiO KREFTREG
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Bollineni, Ravi Chand; Koehler, Christian; Gislefoss, Randi Elin; Anonsen, Jan Haug; Thiede, Bernd. Large-scale intact glycopeptide identification by Mascot database search. Scientific Reports 2018 ;Volume 8. UiO KREFTREG
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Dugarte, Maria Eugenia Chollet; Andersen, Elisabeth; Skarpen, Ellen; Myklebust, Christiane Filion; Koehler, Christian; Morth, Jens Preben; Chuansumrit, Ampaiwan; Pinotti, Mirko; Bernardi, Francesco; Thiede, Bernd; Sandset, Per Morten; Skretting, Grethe. Factor VII deficiency: Unveiling the cellular and molecular mechanisms underlying Three model alterations of the enzyme catalytic domain. Biochimica et Biophysica Acta - Molecular Basis of Disease 2018 ;Volume 1864.(3) p. 660-667 OUS UiO
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Tran, Trung; Bollineni, Ravi Chand; Koehler, Christian; Thiede, Bernd. Absolute two-point quantification of proteins using dimethylated proteotypic peptides. The Analyst 2018 ;Volume 143.(18) p. 4359-4365 UiO
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2017
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Koehler, Christian; Bollineni, Ravi Chand; Thiede, Bernd. Application of the half decimal place rule to increase the peptide identification rate. Rapid Communications in Mass Spectrometry 2017 ;Volume 31.(2) p. 227-233 UiO
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Tran, Trung; Bollineni, Ravi Chand; Strozynski, Margarita Anna; Koehler, Christian; Thiede, Bernd. Identification of Alternative Splice Variants Using Unique Tryptic Peptide Sequences for Database Searches. Journal of Proteome Research 2017 ;Volume 16.(7) p. 2571-2578 UiO
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2015
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11. |
Arntzen, Magnus Øverlie; Boddie, Paul; Frick, Rahel; Koehler, Christian; Thiede, Bernd. Consolidation of proteomics data in the Cancer proteomics database. Proteomics 2015 ;Volume 15.(22) p. 3765-3771 NMBU UiO
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Chymkowitch, Pierre; Nguéa P, Aurélie; Aanes, Håvard; Koehler, Christian; Thiede, Bernd; Lorenz, Susanne; Meza, Leonardo Zepeda; Klungland, Arne; Enserink, Jorrit. Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes. Genome Research 2015 ;Volume 25.(6) p. 897-906 OUS UiO
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Koehler, Christian; Arntzen, Magnus Øverlie; Thiede, Bernd. The impact of carbon-13 and deuterium on relative quantification of proteins using stable isotope diethyl labeling. Rapid Communications in Mass Spectrometry 2015 ;Volume 29.(9) p. 830-836 NMBU UiO
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Øverbye, Anders; Skotland, Tore; Koehler, Christian; Thiede, Bernd; Seierstad, Therese; Berge, Viktor; Sandvig, Kirsten; Llorente, Alicia. Identification of prostate cancer biomarkers in urinary exosomes. OncoTarget 2015 ;Volume 6.(30) p. 30357-30376 UiO OUS
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2013
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Koehler, Christian; Arntzen, Magnus; De Souza, Gustavo Antonio; Thiede, Bernd. An Approach for Triplex-Isobaric Peptide Termini Labeling (Triplex-IPTL). Analytical Chemistry 2013 ;Volume 85.(4) p. 2478-2485 UiO OUS
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Størvold, Gro Leite; Landskron, Johannes; Strozynski, Margarita Anna; Arntzen, Magnus; Koehler, Christian; Kalland, Maria Elisabeth; Tasken, Kjetil; Thiede, Bernd. Quantitative profiling of tyrosine phosphorylation revealed changes in the activity of the T cell receptor signaling pathway upon cisplatin-induced apoptosis. Journal of Proteomics 2013 ;Volume 91. p. 344-357 UiO OUS
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Thiede, Bernd; Koehler, Christian; Strozynski, Margarita Anna; Treumann, Achim; Stein, Robert; Zimny-Arndt, Ursula; Schmid, Monika; Jungblut, Peter R.. High Resolution Quantitative Proteomics of HeLa Cells Protein Species Using Stable Isotope Labeling with Amino Acids in Cell Culture(SILAC), Two-Dimensional Gel Electrophoresis(2DE) and Nano-Liquid Chromatograpohy Coupled to an LTQ-OrbitrapMass Spectrometer. Molecular & Cellular Proteomics 2013 ;Volume 12.(2) p. 529-538 UiO
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2012
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18. |
Koehler, Christian; Arntzen, Magnus; Treumann, Achim; Thiede, Bernd. A Rapid Approach for Isobaric Peptide Termini Labeling. Methods in molecular biology 2012 ;Volume 893. p. 129-141 UiO NMBU
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19. |
Koehler, Christian; Arntzen, Magnus; Treumann, Achim; Thiede, Bernd. Comparison of data analysis parameters and MS/MS fragmentation techniques for quantitative proteome analysis using isobaric peptide termini labeling (IPTL). Analytical and Bioanalytical Chemistry 2012 ;Volume 404.(4) p. 1103-1114 UiO
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Thiede, Bernd; Koehler, Christian; Strozynski, Margarita Anna; Treumann, A; Stein, Robert; Zimny-Amdt, Ursula; Schmid, Monika; Jungblut, Peter R.. Protein species high resolution quantitative proteomics of HeLa cells using SILAC-2-DE-nanoLC/LTQ-Orbitrap mass spectrometry. Molecular & Cellular Proteomics 2012 p. - UiO
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2011
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Arntzen, Magnus; Koehler, Christian; Barsnes, Harald; Berven, Frode; Treumann, Achim; Thiede, Bernd. IsobariQ: Software for Isobaric Quantitative Proteomics using IPTL, iTRAQ, and TMT. Journal of Proteome Research 2011 ;Volume 10.(2) p. 913-920 NMBU NORCE UiO UiB OUS
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Arntzen, Magnus; Koehler, Christian; Barsnes, Harald; Berven, Frode; Treumann, Achim; Thiede, Bernd. IsobariQ: Software for isobaric quantitative proteomics using IPTL, iTRAQ and TMT. 10th World Congress of Human Proteome Organization HUPO; 2011-09-04 - 2011-09-07 UiB UiO
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23. |
Arntzen, Magnus; Koehler, Christian; Treumann, Achim; Thiede, Bernd. Quantitative proteome analysis using isobaric peptide termini labeling (IPTL). Methods in molecular biology 2011 ;Volume 753. p. 65-76 NMBU UiO OUS
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Koehler, Christian; Arntzen, Magnus; Strozynski, Margarita Anna; Treumann, Achim; Thiede, Bernd. Isobaric Peptide Termini Labeling Utilizing Site-Specific N-Terminal Succinylation. Analytical Chemistry 2011 ;Volume 83.(12) p. 4775-4781 UiO NMBU OUS
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25. |
Kozielski, Frank; Riaz, Tahira; DeBonis, Salvatore; Koehler, Christian; Panse, Isabel; Strozynski, Margarita Anna; Donaldson, Ian Matthew; Thiede, Bernd; Kroening, Mario. Proteome analysis of microtubule-associated proteins and their interacting partners from mammalian brain. Amino Acids 2011 ;Volume 41.(2) p. 363-385 UiO
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26. |
Schmidt, Frank; Dahlmann, Burkhardt; Hustoft, Hanne Kolsrud; Koehler, Christian; Strozynski, Margarita Anna; Kloss, Alexander; Zimny-Arndt, Ursula; Jungblut, Peter R.; Thiede, Bernd. Quantitative proteome analysis of the 20S proteasome of apoptotic Jurkat T cells. Amino Acids 2011 ;Volume 41.(2) p. 351-361 UiO
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2010
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Dørum, Siri; Arntzen, Magnus; Qiao, Shuo Wang; Holm, Anders; Koehler, Christian; Thiede, Bernd; Sollid, Ludvig Magne; Fleckenstein, Burkhard. The Preferred Substrates for Transglutaminase 2 in a Complex Wheat Gluten Digest Are Peptide Fragments Harboring Celiac Disease T-Cell Epitopes. PLOS ONE 2010 ;Volume 5.(11) UiO NMBU OUS
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28. |
Kozielski, Frank; Riaz, Tahira; DeBonis, Salvatore; Koehler, Christian; Kröning, Mario; Panse, Isabel; Strozynski, Margarita Anna; Donaldson, Ian M; Thiede, Bernd. Proteome analysis of microtubule-associated proteins and their interacting partners from mammalian brain. Amino Acids 2010 UiO
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29. |
De Souza, Gustavo; Fortuin, Suereta; Aguilar, Diana; Pando, Rogelio Hernandez; McEvoy, Christopher R.E.; van Helden, Paul D.; Koehler, Christian J; Thiede, Bernd; Warren, Robin M; Wiker, Harald G. Using a Label-free Proteomics Method to Identify Differentially Abundant Proteins in Closely Related Hypo- and Hypervirulent Clinical Mycobacterium tuberculosis Beijing Isolates. Molecular & Cellular Proteomics 2010 ;Volume 9.(11) p. 2414-2423 UiB UiO HAUKELAND
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Saunders, Threrese Solstad; Bjørgo, Elisa; Koehler, Christian; Strozynski, Margarita Anna; Torgersen, Knut Martin; Tasken, Kjetil; Thiede, Bernd. Quantitative proteome analysis of detergent-resistant membranes identifies the differential regulation of protein kinase C isoforms in apoptotic T cells. Proteomics 2010 ;Volume 10.(15) p. 2758-2768 UiO
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Schmidt, Frank; Dahlmann, Burkhardt; Hustoft, Hanne Kolsrud; Koehler, Christian; Strozynski, Margarita Anna; Klof, Alexander; Zimmy-Arndt, Ursula; Jungblut, Peter R.; Thiede, Bernd. Quantitative proteome analysis of the 20S proteasome of apoptotic Jurkat T cells. Amino Acids 2010 UiO
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32. |
Tomazella, Gisele Guiqardi; daSilva, Idalete; Thomé, Carolina H.; Greene, Lewis J; Koehler, Christian J; Thiede, Bernd; Wiker, Harald G; De Souza, Gustavo. Analysis of detergent-insoluble and whole cell lysate fractions of resting neutrophils using high-resolution mass spectrometry. Journal of Proteome Research 2010 ;Volume 9.(4) p. 2030-2036 UiB UiO
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2009
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De Souza, Gustavo; Fortuin, Suereta; McEvoy, Christopher R; Pando, Rogelio Hernandez; Koehler, Christian J; Thiede, Bernd; Warren, Robin M; Wiker, Harald G. A label-free method identified differentially abundant proteins in related M.tuberculosis Beijing strains. HuPO VIII World Congress; 2009-09-26 - 2009-09-30 HAUKELAND UiB
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de Souza, GA; De Souza, Gustavo; Søfteland, Tina; Softeland, T; Koehler, Christian J; Thiede, Bernd; Wiker, Harald G. Validating divergent ORF annotation of the Mycobacterium leprae genome through a full translation dataset and peptide identification by tandem mass spectrometry. Proteomics 2009 ;Volume 9.(12) p. 3233-3243 UiO UiB HAUKELAND
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Koehler, Christian; Strozynski, Margarita Anna; Kozielski, F; Treumann, A; Thiede, Bernd. Isobaric Peptide Termini Labeling for MS/MS-Based Quantitative Proteomics. Journal of Proteome Research 2009 ;Volume 8.(9) p. 4333-4341 UiO
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