Current Research Information SysTem In Norway
 
 

 Norsk versjon


 
Mainpage
Research results/NVI
Researchers
Projects
Research units
Log in
About Cristin
 
 
   
Back to search     Short format     Full format    
Export to


Showing results 1-50 of 120 << Previous 1 2 3    Next >>

2018
1 Jørgensen, Tor Erik; Karlsen, Bård Ove; Emblem, Åse; Breines, Ragna; Andreassen, morten; Rounge, Trine Ballestad; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd; Nymark, Marianne; Ursvik, anita; Coucheron, Dag H; Jakt, Lars Martin; Nordeide, Jarle Tryti; Moum, Truls Borg; Johansen, Steinar Daae.
Mitochondrial genome variation of Atlantic cod. BMC Research Notes 2018 ;Volume 11:397. p. 1-7
NORD NLSH UiO UiT Untitled
 
2 Lie, Kai Kristoffer; Tørresen, Ole K.; Solbakken, Monica Hongrø; Rønnestad, Ivar; Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Jentoft, Sissel; Sæle, Øystein.
Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish. BMC Genomics 2018 ;Volume 19:186.(1) p. 1-17
NIFES UiB UiO Untitled
 
3 Tørresen, Ole K.; Brieuc, Marine Servane; Solbakken, Monica Hongrø; Sørhus, Elin; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd; Meier, Sonnich; Edvardsen, Rolf; Jentoft, Sissel.
Genomic architecture of haddock (Melanogrammus aeglefinus) shows expansions of innate immune genes and short tandem repeats. BMC Genomics 2018 ;Volume 19.(240)
HAVFORSK UiO Untitled
 
2017
4 Elgvin, Tore Oldeide; Trier, Cassandra Nicole; Tørresen, Ole Kristian; Hagen, Ingerid; Lien, Sigbjørn; Nederbragt, Alexander Johan; Ravinet, Mark Simon Paul; Jensen, Henrik; Sætre, Glenn-Peter.
The genomic mosaicism of hybrid speciation. Science Advances 2017 ;Volume 3. p. 1-16
NTNU UiO NMBU Untitled
 
5 Khelik, Ksenia; Lagesen, Karin; Sandve, Geir Kjetil; Rognes, Torbjørn; Nederbragt, Alexander Johan.
NucDiff: in-depth characterization and annotation of differences between two sets of DNA sequences. BMC Bioinformatics 2017 ;Volume 18.(1) p. 1-14
OUS UiO VETINST Untitled
 
6 Nederbragt, Alexander Johan.
How I got infected by fish genomics - and how you can too. Eijkman lecture; 2017-03-24 - 2017-03-24
UiO Untitled
 
7 Nederbragt, Alexander Johan.
Software Carpentry og Data Carpentry: opplæring i bruk og deling av forskningsdata – for forskere, av forskere, ved UiO. NARMA Vårkonferanse 2017; 2017-03-28 - 2017-03-29
UiO Untitled
 
8 Nederbragt, Alexander Johan.
Teaching Researchers Basic Skills for Computational Research: the Software Carpentry Model. 2017 Nordic eInfrastructure Collaboration conference; 2017-05-29 - 2017-06-01
UiO Untitled
 
9 Rand, Knut Dagestad; Grytten, Ivar; Nederbragt, Alexander Johan; Storvik, Geir Olve; Glad, Ingrid Kristine; Sandve, Geir Kjetil.
Coordinates and intervals in graph-based reference genomes. BMC Bioinformatics 2017 ;Volume 18:263. p. 1-8
UiO Untitled
 
10 Sandve, Simen Rød; Hvidsten, Torgeir Rhoden; Lien, Sigbjørn; Rori, Rohlfs; Jakobsen, Kjetill Sigurd; Nome, Torfinn; Varadharajan, Srinidhi; Nederbragt, Alexander Johan; Vøllestad, Leif Asbjørn.
Evolution after whole genome duplication - insights from the salmonids. Evolution Conference; 2017-06-22
UiO NMBU Untitled
 
11 Simovski, Boris; Vodak, Daniel; Gundersen, Sveinung; Domanska, Diana Ewa; Azab, Abdulrahman; Holden, Lars; Holden, Marit; Grytten, Ivar; Rand, Knut Dagestad; Drabløs, Finn; Johansen, Morten; Mora Ortiz, Antonio Carlos; Lund-Andersen, Christin; Fromm, Bastian; Eskeland, Ragnhild; Gabrielsen, Odd Stokke; Ferkingstad, Egil; Nakken, Sigve; Bengtsen, Mads; Nederbragt, Alexander Johan; Thorarensen, Hildur Sif; Akse, Johannes Andreas; Glad, Ingrid Kristine; Hovig, Johannes Eivind; Sandve, Geir Kjetil.
GSuite HyperBrowser: integrative analysis of dataset collections across the genome and epigenome. GigaScience 2017 ;Volume 6.(7) Suppl. https://academic.oup p. 1-12
NR NTNU OUS UiO Untitled
 
12 Tennøe, Simen; Mobarhan, Milad; Dragly, Svenn-Arne; Solbrå, Andreas Våvang; Nederbragt, Alexander Johan.
Teaching modelling to first-year biology students. 2017 International Conference on Computational Science and Engineering - Software, Education, and Biomedical applications; 2017-10-23 - 2017-10-25
UiO Untitled
 
13 Tørresen, Ole Kristian; Star, Bastiaan; Jentoft, Sissel; Reinar, William Brynildsen; Grove, Harald; Miller, Jason R.; Walenz, Brian; Knight, James; Ekholm, Jenny M.; Peluso, Paul; Edvardsen, Rolf; Tooming-Klunderud, Ave; Skage, Morten; Lien, Sigbjørn; Jakobsen, Kjetill Sigurd; Nederbragt, Alexander Johan.
An improved genome assembly uncovers prolific tandem repeats in Atlantic cod. BMC Genomics 2017 ;Volume 18. p. 1-23
HAVFORSK UIA UiO NMBU Untitled
 
14 Wilson, Greg; Brian, Jennifer; Cranston, Karen; Kitzes, Justin; Nederbragt, Alexander Johan; Teal, Tracy K.
Good enough practices in scientific computing. PloS Computational Biology 2017 ;Volume 13.(6)
UiO Untitled
 
2016
15 Eide, Marta; Puntervoll, Pål; Lille-Langøy, Roger; Goldstone, Jared V.; Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Rydbeck, Halfdan; Jakobsen, Kjetill Sigurd; Stegeman, John; Goksøyr, Anders; Karlsen, Odd Andre.
Chemical warfare in the marine environment: genomic survey of the Atlantic cod (Gadus morhua) defensome reveals the absence of an important xenosensor. 30th ESCBP Congress: Unraveling complexity: from molecules to ecosystems; 2016-09-04 - 2016-09-07
UiB UiO Untitled
 
16 Frank, Jeremy A.; Pan, Yao; Tooming-Klunderud, Ave; Eijsink, Vincent; McHardy, Alice C; Nederbragt, Alexander Johan; Pope, Phillip.
Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. Scientific Reports 2016 ;Volume 6. p. -
UiO NMBU Untitled
 
17 Lien, Sigbjørn; Koop, Ben F; Sandve, Simen Rød; Miller, Jason R.; Kent, Matthew Peter; Nome, Torfinn; Hvidsten, Torgeir Rhoden; Leong, Jong; Minkley, David R.; Zimin, Aleksey; Grammes, Fabian; Grove, Harald; Gjuvsland, Arne Bjørke; Walenz, Brian; Hermansen, Russell A.; von Schalburg, Kristian R.; Rondeau, Eric; Genova, Alex Di; Antony Samy, Jeevan Karloss; Vik, Jon Olav; Vigeland, Magnus Dehli; Caler, Lis; Grimholt, Unni; Jentoft, Sissel; Våge, Dag Inge; de Jong, Pieter J.; Moen, Thomas; Baranski, Matthew; Palti, Yniv; Smith, Douglas W.; Yorke, James A.; Nederbragt, Alexander J.; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Jiang, Xuanting; Fan, Dingding; Hu, Yan; Liberles, David A.; Vidal, Rodrigo; Iturra, Patricia; Jones, Steven J.M.; Jonassen, Inge; Maass, Alejandro; Omholt, Stig William; Davidson, William S.
The Atlantic salmon genome provides insights into rediploidization. Nature 2016 ;Volume 533.(7602) p. 200-205
NOFIMA NTNU OUS UiB UiO VETINST NMBU Untitled
 
18 Malmstrøm, Martin; Matschiner, Michael; Tørresen, Ole Kristian; Star, Bastiaan; Snipen, Lars-Gustav; Hansen, Thomas F; Baalsrud, Helle Tessand; Nederbragt, Alexander Johan; Hanel, Reinhold; Salzburger, Walter; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd; Jentoft, Sissel.
Evolution of the immune system influences speciation rates in teleost fishes. Nature Genetics 2016 ;Volume 48.(10) p. 1204-1210
HAVFORSK UIA UiO NMBU Untitled
 
19 Nederbragt, Alexander Johan.
Doing bioinformatics: a user’s perspective. Balti and Bioinformatics; 2016-09-28 - 2016-09-28
UiO Untitled
 
20 Nederbragt, Alexander Johan.
Genomic variation detection in Atlantic cod using long reads. SMRT Scientific Conference: Changing the World, One Molecule at a Time!; 2016-06-06 - 2016-06-07
UiO Untitled
 
21 Nederbragt, Alexander Johan.
In between lines of code - a blog about biology, sequencing, bioinformatics and more.
UiO Untitled
 
22 Nederbragt, Alexander Johan.
SMRTwishes for SMRTsoftware for SMRTreads - a user’s perspective. SMRT Informatics Developers Conference; 2016-06-08 - 2016-06-08
UiO Untitled
 
23 Nederbragt, Alexander Johan.
The new Atlantic cod reference genome. ELIXIR Innovation and SME Forum: Data-Driven innovation in the aquaculture industries; 2016-05-12 - 2016-05-13
UiO Untitled
 
24 Nederbragt, Alexander Johan; Lagesen, Karin.
The Carpentry effort at the University of Oslo. Miniseminar "Open Data Skills"; 2016-03-14
UiO Untitled
 
25 Solbakken, Monica Hongrø; Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Seppola, Marit; Gregers, Tone Fredsvik; Jakobsen, Kjetill Sigurd; Jentoft, Sissel.
Evolutionary redesign of the Atlantic cod (Gadus morhua L.) Toll-like receptor repertoire by gene losses and expansions. Scientific Reports 2016 ;Volume 6.
UIA UiO UiT Untitled
 
26 Star, Bastiaan; Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd; Pampoulie, Christophe; Jentoft, Sissel.
Genomic characterization of the Atlantic cod sex-locus. Scientific Reports 2016 ;Volume 6. p. 1-9
UIA UiO Untitled
 
27 Tørresen, Ole Kristian; Rise, Matthew L.; Jin, Xingkun; Star, Bastiaan; MacKenzie, Simon; Jakobsen, Kjetill Sigurd; Nederbragt, Alexander Johan; Jentoft, Sissel.
An improved version of the Atlantic cod genome and advancements in functional genomics: implications for the future of cod farming. I: Genomics in Aquaculture. Elsevier 2016 ISBN 9780128014189. p. 45-72
UIA UiO Untitled
 
28 Tørresen, Ole Kristian; Star, Bastiaan; Jentoft, Sissel; Jakobsen, Kjetill Sigurd; Nederbragt, Alexander Johan.
The new era of genome sequencing using high-throughput sequencing technology: Generation of the first version of the Atlantic cod genome. I: Genomics in Aquaculture. Elsevier 2016 ISBN 9780128014189. p. 1-20
UIA UiO Untitled
 
2015
29 Crusoe, Michael R.; Alameldin, Hussien F.; Awad, Sherine; Boucher, Elmar; Caldwell, Adam; Cartwright, Reed; Amanda, Charbonneau; Constantinides, Bede; Edvenson, Greg; Fay, Scott; Fenton, Jacob; Fenzl, Thomas; Fish, Jordan; Garcia-Gutierrez, Leonor; Garland, Phillip; Gluck, Jonathan; González, Iván; Guermond, Sarah; Guo, Jiarong; Gupta, Aditi; Herr, Joshua R.; Howe, Adina; Hyer, Alex; Härpfer, Alex; Irber, Luiz; Kidd, Rhys; Lin, David; Lippi, Justin; Mansour, Tamer; McA'Nulty, Pamela; McDonald, Eric; Mizzi, Jessica; Murray, Kevin D.; Nahum, Joshua R.; Nanlohy, Kaben; Nederbragt, Alexander Johan; Ortiz-Zuazaga, Humberto; Ory, Jeramia; Pell, Jason; Pepe-Ranney, Charles; Russ, Zachary N.; Schwarz, Erich; Scott, Camille; Seaman, Josiah; Sievert, Scott; Simpson, Jared; Skennerton, Connor T.; Spencer, James; Srinivasan, Ramakrishnan; Standage, Daniel; Stapleton, James A.; Steinman, Susan R.; Stein, Joe; Taylor, Benjamin; Trimble, Will; Wiencko, Heather L.; Wright, Michael; Wyss, Brian; Zhang, Qingpeng; zyme, en; Brown, C. Titus.
The khmer software package: enabling efficient nucleotide sequence analysis. F1000 Research 2015 p. 1-12
UiO Untitled
 
30 Nederbragt, Alexander Johan.
A New, High Quality Reference Genome Assembly For Atlantic Cod. 9th European Zebrafish Meeting; 2015-06-28 - 2015-07-02
UiO Untitled
 
31 Nederbragt, Alexander Johan.
Active learning strategies for bioinformatics teaching. FEBS-IUBMB WORKSHOP ON EDUCATION IN MOLECULAR LIFE SCIENCES; 2015-09-18 - 2015-09-19
UiO Untitled
 
32 Nederbragt, Alexander Johan.
Bioinformatics breakout : Recent experiences from Oslo. Pacific Biosciences user group meeting; 2015-11-09 - 2015-11-10
UiO Untitled
 
33 Nederbragt, Alexander Johan.
In between lines of code - a blog about biology, sequencing, bioinformatics and more.
UiO Untitled
 
34 Nederbragt, Alexander Johan.
Local, central or cloud Why we chose to build our e-infrastructure for sequence analysis embedded in the university of Oslo HPC cluster. Workshop: e-Infrastructures for Massively Parallel Sequencing; 2015-01-19 - 2015-02-20
UiO Untitled
 
35 Star, Bastiaan; Jentoft, Sissel; Matschiner, Michael; Nederbragt, Alexander Johan; Kjesbu, Olav Sigurd; Berg, Paul Ragnar; Bradbury, Ian R.; Pampoulie, Christophe; Hansen, Marianne Helén Selander; Skage, Morten; Jakobsen, Kjetill Sigurd; Stenseth, Nils Christian.
Does historic DNA provide genomic evidence for recent selection in Atlantic cod?. Society for Molecular Biology and Evolution; 2015-07-12 - 2015-07-16
UiO NMBU Untitled
 
2014
36 Brembu, Tore; Winge, Per; Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd; Bones, Atle M..
The chloroplast genome of the diatom Seminavis robusta: New features introduced through multiple mechanisms of horizontal gene transfer. Marine Genomics 2014 ;Volume 16.(1) p. 17-27
NTNU UiO Untitled
 
37 Brynildsen, William; Tørresen, Ole Kristian; Jakobsen, Kjetill Sigurd; Nederbragt, Alexander Johan.
Genomic sequence repeats in fish genomes. CEES Annual Student Conference; 2014-10-21 - 2014-10-22
UiO Untitled
 
38 Hermansen, Jo Skeie; Haas, Fredrik; Trier, Cassandra Nicole; Bailey, Richard Ian; Nederbragt, Alexander Johan; Marzal, Alfonso; Sætre, Glenn-Peter.
Hybrid speciation through sorting of parental incompatibilities in Italian sparrows. Molecular Ecology 2014 ;Volume 23.(23) p. 5831-5842
UiO Untitled
 
39 Matschiner, Michael; Star, Bastiaan; Berg, Paul Ragnar; Tørresen, Ole Kristian; Nederbragt, Alexander Johan; Hansen, Marianne Helén Selander; Skage, Morten; Kjesbu, Olav Sigurd; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd; Jentoft, Sissel.
Population differentiation and local adaptation in Atlantic cod. CEES Annual Student Conference; 2014-10-21 - 2014-10-22
UiO Untitled
 
40 Nederbragt, Alexander Johan.
Assembly – before and after. Metagenome data analysis Workshop; 2014-05-21 - 2014-05-21
UiO Untitled
 
41 Nederbragt, Alexander Johan.
Coding & Best Practice in Programming: Why it matters so much in the NGS era. SeqAhead Scientific Meeting 2014 "NGS Data after the Gold Rush"; 2014-05-06 - 2014-05-08
UiO Untitled
 
42 Nederbragt, Alexander Johan.
In between lines of code - a blog about biology, sequencing, bioinformatics and more.
UiO Untitled
 
43 Nederbragt, Alexander Johan.
Mix and match: using multiple sequencing technologies and assemblers for the new Atlantic cod genome. SeRC Nordic Assembly Workshop; 2014-05-21 - 2014-05-21
UiO Untitled
 
44 Nederbragt, Alexander Johan.
The why and how of long reads for de novo genome assembly. Institute of Molecular Life Sciences Lecture Series; 2014-10-28 - 2014-10-28
UiO Untitled
 
45 Nederbragt, Alexander Johan.
The why and how of long reads for de novo genome assembly. Guest lecture at Salzburger lab; 2014-10-27 - 2014-10-27
UiO Untitled
 
46 Nederbragt, Alexander Johan; Walenz, Brian; Tørresen, Ole Kristian; Jentoft, Sissel; Jakobsen, Kjetill Sigurd; Miller, Jason Rafe.
Towards correction-free assembly of raw PacBio reads. Advances in Genome Biology and Technology (AGBT); 2014-02-12 - 2015-02-15
UiO Untitled
 
47 Siddiqui, Huma; Lagesen, Karin; Nederbragt, Alexander Johan; Eri, Lars Magne; Jeansson, Stig; Jakobsen, Kjetill Sigurd.
Pathogens in Urine from a Female Patient with Overactive Bladder Syndrome Detected by Culture-Independent High Throughput Sequencing: A Case Report. Open Microbiology Journal 2014 ;Volume 8. p. 148-153
UiO Untitled
 
48 Star, Bastiaan; Nederbragt, Alexander Johan; Hansen, Marianne Helén Selander; Skage, Morten; Gilfillan, Gregor Duncan; Bradbury, Ian R.; Pampoulie, Christophe; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd; Jentoft, Sissel.
Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA. PLoS ONE 2014 ;Volume 9.(3)
OUS UiO Untitled
 
49 Tørresen, Ole Kristian; Jentoft, Sissel; Star, Bastiaan; Sandve, Geir Kjetil F.; Skage, Morten; Hansen, Marianne Helén Selander; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Nederbragt, Alexander Johan.
A new, high quality reference genome assembly for Atlantic cod. CEES Annual Student Conference; 2014-10-21 - 2014-10-22
UiO Untitled
 
50 Tørresen, Ole Kristian; Walenz, Brian; Grove, Harald; Lien, Sigbjørn; Knight, James; Star, Bastiaan; Lagesen, Karin; Sandve, Geir Kjetil F.; Skage, Morten; Hansen, Marianne Helén Selander; Klunderud, Ave Tooming; Miller, Jason Rafe; Jentoft, Sissel; Jakobsen, Kjetill Sigurd; Nederbragt, Alexander Johan.
A new, high quality reference genome assembly for Atlantic cod. SocBiN Bioinformatics; 2014-06-11 - 2014-06-13
UiO NMBU Untitled
 
    Show next list