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2020
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| 1. | Bjerke, Ingvild Elise; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B.. Database of literature derived cellular measurements from the murine basal ganglia. Scientific Data 2020 ;Volume 7. p. - UiO |
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| 2. | Bjerke, Ingvild Elise; Yates, Sharon Christine; Laja, Arthur; Witter, Menno; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B.. Densities and numbers of calbindin and parvalbumin positive neurons across the rat and mouse brain. iScience 2020 ;Volume 24:101906.(1) p. 1-52 NTNU UiO |
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| 3. | Groeneboom, Nicolaas Ervik; Yates, Sharon Christine; Puchades, Maja; Bjaalie, Jan G.. Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images.. Frontiers in Neuroinformatics 2020 UiO |
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| 4. | Gurdon, Brianna; Hadad, Niran; Telpoukhovskaia, Maria; Yates, Sharon Christine; Puchades, Maja; Bjaalie, Jan G.; Kaczorowski, Catherine. Brain-wide spatial analysis to identify region-specific changes in cell composition associated with resilience to Alzheimer’s disease in the AD-BXD mouse population.. The Alzheimer’s Association International Conference 2020; 2020-07-27 - 2020-07-30 UiO |
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| 5. | Reiten, Ingrid; Schlegel, Ulrike; Aasebø, Ida Elisabeth Jørgensen; Blixhavn, Camilla Hagen; Zehl, Lyuba; Kjelsberg, Kasper; Schmid, Oliver; Puchades, Maja; Weyers, Benjamin; Davison, Andrew P.; Dicksheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G.. Neuroscience community-gains from data sharing through the EBRAINS infrastructure. FENS 2020 Virtual Forum; 2020-06-11 - 2020-06-15 UiO |
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| 6. | Reiten, Ingrid; Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Aasebø, Ida Elisabeth Jørgensen; Yates, Sharon Christine; Kleven, Heidi; Øvsthus, Martin; Bjerke, Ingvild Elise; Puchades, Maja; Leergaard, Trygve B.; Bjaalie, Jan G.. Data sharing through the online EBRAINS platform: a new service for brain research. 4th HBP Student Conference on Interdisciplinary Brain Research; 2020-01-21 - 2020-01-22 UiO |
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| 7. | Schlegel, Ulrike; Reiten, Ingrid; Aasebø, Ida Elisabeth Jørgensen; Blixhavn, Camilla Hagen; Zehl, Lyuba; Kjelsberg, Kasper; Schmid, Oliver; Puchades, Maja; Weyers, Benjamin; Davison, Andrew P.; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G.. EBRAINS data sharing: benefits and workflow. FENS 2020 Virtual Forum; 2020-06-11 - 2020-06-15 UiO |
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2019
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| 8. | Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Schlegel, Ulrike; Oliver, Schmid; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G.. EBRAINS fair data service: A novel infrastructure for making neuroscience data findable, accessible, interoperable, and reuseable. Sfn 2019; 2019-10-19 - 2019-10-24 UiO |
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| 9. | Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Zehl, Lyuba; Bjerke, Ingvild Elise; Schmid, Oliver; Øvsthus, Martin; Aasebø, Ida Elisabeth Jørgensen; Yates, Sharon Christine; Schlegel, Ulrike; Legouée, Elodie; Abrams, Mathew; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G.. Neuroinformatics platform for making neuroscience data Findable, Accessible, Interoperable, and Reuseable. INCF Conference 2019; 2019-08-31 - 2019-09-02 UiO |
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| 10. | Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Zarfarnia, Sara; Köhnen, Stefan; Hilverling, Anna; Kleven, Heidi; Bjerke, Ingvild Elise; Schmid, Oliver; Øvsthus, Martin; Yates, Sharon Christine; Schlegel, Ulrike; Legouée, Elodie; Abrams, Mathew; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G.. Resources for making neuroscience data FAIR. The Human Brain Project invites researchers to share, find, and use data via the new EBRAINS infrastructure. Nordic neuroscience 2019; 2019-06-12 - 2019-06-12 UiO |
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| 11. | Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Kleven, Heidi; Schlegel, Ulrike; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B.. Find and explore rodent brain data using 3D atlases in the new EBRAINS infrastructure. Neuroscience 2019; 2019-10-19 - 2019-10-23 UiO |
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| 12. | Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Kleven, Heidi; Schlegel, Ulrike; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B.. Infrastructure and workflow for integrating and navigating multi-scale and multi-modal murine neuroscience data using 3D digital brain reference atlases. Neuroinformatics 2019; 2019-09-01 - 2019-09-02 UiO |
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| 13. | Lillehaug, Sveinung; Yetman, Michael J.; Puchades, Maja; Checinska, Martyna; Kleven, Heidi; Jankowsky, Joanna L.; Bjaalie, Jan G.; Leergaard, Trygve B.. Data Descriptor: Brain-wide distribution of reporter expression in five transgenic tetracyclinetransactivator mouse lines. Scientific Data 2019 ;Volume 6. p. 1-15 UiO |
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| 14. | Puchades, Maja; Csúcs, Gergely; Ledergerber, Debora; Leergaard, Trygve B.; Bjaalie, Jan G.. Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool. PLOS ONE 2019 ;Volume 14.(5) NTNU UiO |
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| 15. | Puchades, Maja; Yates, Sharon Christine; Groeneboom, Nicolaas; Csúcs, Gergely; Leergaard, Trygve B.; Bjaalie, Jan G.. Workflow for quantification and spatial analysis of labeling in large series of histological images from murine brains. Society for Neurosciences annual meeting; 2019-10-19 - 2019-10-23 UiO |
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| 16. | Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Yates, Sharon Christine; Øvsthus, Martin; Bjerke, Ingvild Elise; Kleven, Heidi; Groeneboom, Nicolaas Ervik; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B.. Integrating and analysing heterogeneous rodent neuroscience data using three-dimensional brain reference atlases. Nordic Neuroscience; 2019-06-12 UiO |
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| 17. | Yates, Sharon Christine; Groeneboom, Nicolaas; Csúcs, Gergely; Leergaard, Trygve B.; Puchades, Maja; Bjaalie, Jan G.. Batch quantification and spatial analysis of labelling in microscopic rodent brain sections. Neuroinformatics 2019; 2019-09-01 - 2019-09-02 UiO |
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| 18. | Yates, Sharon Christine; Groeneboom, Nicolaas Ervik; Coello, Christopher; Lichtenthaler, Stefan F.; Kuhn, Peer-Hendrik; Demuth, Hans-Ulrich; Hartlage-Rübsamen, Maike; Rossner, Steffen; Leergaard, Trygve B.; Kreshuk, Anna; Puchades, Maja; Bjaalie, Jan G.. QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Frontiers in Neuroinformatics 2019 ;Volume 13. UiO |
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2018
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| 19. | Bjerke, Ingvild Elise; Øvsthus, Martin; Papp, Eszter Agnes; Yates, Sharon Christine; Silvestri, L; Fiorilli, J; Pennartz, CMA; Pavone, FS; Puchades, Maja; Leergaard, Trygve Brauns; Bjaalie, Jan G.. Data integration through brain atlasing: Human Brain Project tools and strategies. European psychiatry 2018 ;Volume 50. p. 70-76 UiO |
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| 20. | Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Markovic, Milica; Kleven, Heidi; Zafarnia, Sara; Köhnen, Stefan; Legouée, Elodie; Puchades, Maja; Schmid, Oliver; Davison, Andrew P.; Muller, Jeff; Dicksheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G.. HBP Curation service: Share your data via the Neuroinformatics platform. Human Brain Project Summit; 2018-10-16 - 2018-10-18 UiO |
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| 21. | Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Yates, Sharon Christine; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B.. Navigating the Murine Brain: Toward Best Practices for Determining and Documenting Neuroanatomical Locations in Experimental Studies. Frontiers in Neuroanatomy 2018 ;Volume 12. UiO |
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| 22. | Blixhavn, Camilla Hagen; Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Kleven, Heidi; Puchades, Maja; Leergaard, Trygve Brauns; Bjaalie, Jan G.. Data integration through digital brain atlasing: Making diverse neuroscience data discoverable using Human Brain Project infrastructure. FENS Forum; 2018-07-07 - 2018-07-11 UiO |
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| 23. | Heiland, Tina; Zeitschel, Ulrike; Puchades, Maja; Kuhn, Peer-Hendrik; Lichtenthaler, Stefan F.; Bjaalie, Jan G.; Hartlage-Rübsamen, Maike; Roßner, Steffen; Höfling, Corinna. Defined astrocytic expression of human amyloid precursor protein in Tg2576 mouse brain. Glia 2018 ;Volume 67.(2) p. 393-403 UiO |
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| 24. | Plank, Anne-Christine; Canneva, Fabio; Raber, Kerstin; Urbach, Yvonne K; Dobner, Julia; Puchades, Maja; Bjaalie, Jan G.; Gillmann, Clarissa; Bäuerle, Tobias; Riess, Olaf; Nguyen, Hoa H.P.; von Hörsten, Stephan. Early Alterations in Operant Performance and Prominent Huntingtin Aggregation in a Congenic F344 Rat Line of the Classical CAGn51trunc Model of Huntington Disease.. Frontiers in Neuroscience 2018 ;Volume 12. UiO |
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| 25. | von Linstow, Christian Ulrich; Yates, Sharon Christine; Leergaard, Trygve B.; Plank, A-C; von Hörsten, S.; Puchades, Maja; Bjaalie, Jan G.. Whole brain analysis of Huntingtin aggregates in the F344 transgenic rat model of Huntington’s disease. FENS forum 2018; 2018-07-07 - 2018-07-11 UiO |
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| 26. | Yates, Sharon Christine; Puchades, Maja; kreshuk, anna; Kutra, Dominik; Leergaard, Trygve B.; Bjaalie, Jan G.; Groeneboom, Nicolaas. HBP Analytic Workflow: from Microscopic Image Data to Extracted Features in Atlas Space. Human Brain Project annual summit; 2018-10-15 - 2018-10-18 UiO |
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2017
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| 27. | Andersson, Krister Andreas; Bell, Simon; Bjerke, Ingvild Elise; Øvsthus, Martin; Blixhavn, Camilla Hagen; Kleven, Heidi; Puchades, Maja; Suzen, M; Denker, Michael; Davison, A.; Grün, Sonja; Leprince, Y; Dickscheid, Timo; McMurtrie, C; Telefont, Martin; Muller, Jeff; Leergaard, Trygve B.; Bjaalie, Jan G.. Submitting data and metadata through the HBP Data Workbench: Concepts, data flows, policies, and best practices. Human Brain Project annual summit; 2017-10-17 - 2017-10-20 UiO |
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| 28. | Andersson, Krister; Morland, Cecilie; Haugen, Øyvind Pernell; Hadzic, Alena; Kleppa, Liv; Gille, Andreas; Rinholm, Johanne Egge; Palibrk, Vuk; Diget, Elisabeth Holm; Kennedy, Lauritz Hagen; Stølen, Tomas; Hennestad, Eivind; Moldestad, Olve; Cai, Yiqing; Puchades, Maja; Offermanns, Stefan; Vervaeke, Koen; Bjørås, Magnar; Wisløff, Ulrik; Storm-Mathisen, Jon; Bergersen, Linda Hildegard. Exercise benefits brain through the lactate receptor HCAR1, increasing VEGF and capillary density in hippocampus and cortex. The Brain Prize Meeting 2017; 2017-10-30 - 2017-11-01 NTNU UiO |
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| 29. | Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Puchades, Maja; Telefont, Martin; Jeff, Muller; Dickscheid, Timo; Leergaard, Trygve Brauns; Bjaalie, Jan G.. Data integration through digital brain atlasing: Human Brain Project infrastructure. Society for Neuroscience annual meeting; 2017-11-11 - 2017-11-16 UiO |
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| 30. | Bjerke, Ingvild Elise; Andersson, Krister Andreas; Øvsthus, Martin; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B.. Navigating the rodent brain: Best practice recommendations for determining and documenting spatial location for neuroscience data. Nordic Neuroscience meeting; 2017-06-07 - 2017-07-09 UiO |
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| 31. | Bjerke, Ingvild Elise; Andersson, Krister; Øvsthus, Martin; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve Brauns. Determining and documenting the anatomical location of experimental neuroscience data: Best practice recommendations. Society for Neuroscience annual meeting; 2017-11-11 - 2017-11-16 UiO |
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| 32. | Leprince, Y; Coello, Sebastian Christopher; Csúcs, Gergely; Chervakov, P; Darine, Dmitri Aleksandrovitsj; Øvsthus, Martin; Bjerke, Ingvild Elise; Yates, Sharon Christine; Puchades, Maja; Leergaard, Trygve B.; Dickscheid, Timo; Bjaalie, Jan G.. Interactive tools for registering of 2D and 3D images to reference atlases. Human Brain Project annual summit; 2017-10-17 - 2017-10-20 UiO |
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| 33. | Morland, Cecilie; Andersson, Krister; Haugen, Øyvind Pernell; Hadzic, Alena; Kleppa, Liv; Gille, Andreas; Rinholm, Johanne Egge; Palibrk, Vuk; Diget, Elisabeth Holm; Kennedy, Lauritz Hagen; Stølen, Tomas; Hennestad, Eivind; Moldestad, Olve; Cai, Yiqing; Puchades, Maja Amedjkouh; Offermanns, Stefan; Vervaeke, Koen Gerard Alois; Bjørås, Magnar; Wisløff, Ulrik; Storm-Mathisen, Jon; Bergersen, Linda Hildegard. Exercise induces cerebral VEGF and angiogenesis via the lactate receptor HCAR1. Nature Communications 2017 ;Volume 8. p. - OSLOMET NTNU OUS UiO |
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| 34. | Prydz, Agnete; Stahl, Katja; Puchades, Maja Amedjkouh; Davarpaneh, Nina; Nadeem, Maria; Ottersen, Ole Petter; Gundersen, Vidar; Amiry-Moghaddam, Mahmood. Subcellular expression of aquaporin-4 in substantia nigra of normal and MPTP-treated mice. Neuroscience 2017 ;Volume 359. p. 258-266 OUS UiO |
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| 35. | Puchades, Maja; Csúcs, Gergely; Checinska, Martyna; Øvsthus, Martin; Bjerke, Ingvild Elise; Andersson, Krister; Leergaard, Trygve Brauns; Bjaalie, Jan G.. Neuroinformatics tool and workflow for anchoring of serial histological images in rodent brain 3D space. Society for Neuroscience annual meeting; 2017-11-11 - 2017-11-16 UiO |
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| 36. | Puchades, Maja; Øvsthus, Martin; Bjerke, Ingvild Elise; Andersson, Krister; Csúcs, Gergely; Leergaard, Trygve Brauns; Bjaalie, Jan G.. Data integration through digital brain atlasing: semiautomatic spatial registration of serial histological images to rodent brain 3D reference atlases. Nordic Neuroscience meeting; 2017-06-07 - 2017-06-09 UiO |
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| 37. | Yates, Sharon Christine; Puchades, Maja; Coello, Sebastian Christopher; Kreshuk, Anna; Hartlage-Rübsamen, Maike; Rossner, Steffen; Leergaard, Trygve Brauns; Bjaalie, Jan G.. Workflow for automated quantification and spatial analysis of labeling in microscoping rodent brain sections. Society for Neuroscience annual meeting; 2017-11-11 - 2017-11-16 UiO |
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| 38. | Yates, Sharon Christine; Puchades, Maja; Coello, Sebastian Christopher; Kreshuk, Anna; Hartlage-Rübsamen, Maike; Rossner, Steffen; Leergaard, Trygve Brauns; Bjaalie, Jan G.. Workflow for automated quantification and spatial analysis of labelling in microscoping rodent brain sections. HBP annual meeting 2017; 2017-10-16 - 2017-10-22 UiO |
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2016
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| 39. | Morland, Cecilie; Andersson, Krister; Haugen, Øyvind Pernell; Hadzic, Alena; Kleppa, Liv; Gille, Andreas; Rinholm, Johanne Egge; Diget, Elisabeth Holm; Kennedy, Lauritz Hagen; Stølen, Tomas; Hennestad, Eivind; Cai, Yiqing; Puchades, Maja Amedjkouh; Offermanns, Stefan; Vervaeke, Koen Gerard Alois; Wisløff, Ulrik; Storm-Mathisen, Jon; Bergersen, Linda Hildegard. A novel mechanism for cerebral angiogenesis via lactate receptor HCAR1 at pial vessels. Benzon Symposium; 2016-08-22 - 2016-08-25 OSLOMET NTNU OUS UiO |
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| 40. | Morland, Cecilie; Andersson, Krister; Haugen, Øyvind Pernell; Hadzic, Alena; Kleppa, Liv; Gille, Andreas; Rinholm, Johanne Egge; Elisabeth, Holm Diget; Kennedy, Lauritz Hagen; Stølen, Tomas; Hennestad, Eivind; Cai, Yiqing; Puchades, Maja Amedjkouh; Offermanns, Stefan; Vervaeke, Koen Gerard Alois; Wisløff, Ulrik; Storm-Mathisen, Jon; Bergersen, Linda Hildegard. Exercise induces cerebral angiogenesis via lactate receptor HCAR1 at pial vessels. FENS Forum; 2016-07-02 - 2016-07-06 OSLOMET NTNU UiO |
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| 41. | Puchades, Maja; Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister; Csúcs, Gergely; Leergaard, Trygve Brauns; Bjaalie, Jan G.. Spatial registration of serial histological image data to reference brain atlases. HBP annual meeting 2016; 2016-10-11 - 2016-10-15 UiO |
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| 42. | Wood, Thomas Ragnar; Osredkar, Damjan; Puchades, Maja Amedjkouh; Maes, Elke; Falck, Mari; Flatebø, Torun; Walløe, Lars; Sabir, Hemmen; Thoresen, Marianne. Treatment temperature and insult severity influence the neuroprotective effects of therapeutic hypothermia. Scientific Reports 2016 ;Volume 6. UiO |
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2015
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| 43. | Falck, Mari; Osredkar, Damjan; Maes, Elke; Wood, Thomas Ragnar; Puchades, Maja Amedjkouh; Sabir, Hemmen; Thoresen, Marianne. Systemic Inflammation Negates Hypothermic Neuroprotection in a Neonatal HIE-model. European Academy of Pediatrics Congress; 2015-09-17 - 2015-09-19 UiO |
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| 44. | Morland, Cecilie; Lauritzen, Knut Husø; Puchades, Maja Amedjkouh; Holm-Hansen, Signe; Andersson, Krister; Gjedde, Albert; Attramadal, Håvard; Storm-Mathisen, Jon; Bergersen, Linda Hildegard. The lactate receptor, G-protein-coupled receptor 81/hydroxycarboxylic acid receptor 1: Expression and action in brain. Journal of Neuroscience Research 2015 ;Volume 93.(7) p. 1045-1055 OUS UiO |
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| 45. | Osredkar, Damjan; Sabir, Hemmen; Falck, Mari; Wood, Thomas Ragnar; Maes, Elke; Flatebø, Torun; Puchades, Maja Amedjkouh; Thoresen, Marianne. Hypothermia Does Not Reverse Cellular Responses Caused by Lipopolysaccharide in Neonatal Hypoxic-Ischaemic Brain Injury. Developmental Neuroscience 2015 ;Volume 37.(4-5) p. 390-397 UiO |
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| 46. | Puchades, Maja Amedjkouh; Darine, Dmitri Aleksandrovitsj; Csúcs, Gergely; Lillehaug, Sveinung; Leergaard, Trygve Brauns; Bjaalie, Jan G.. Feeding rodent brain data to computational models through HBP spatial atlas templates and knowledge graph portal. Human Brain Project annual summit meeting; 2015-09-28 - 2015-09-30 UiO |
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2014
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| 47. | Lauritzen, Knut Husø; Morland, Cecilie; Puchades, Maja Amedjkouh; Holm-Hansen, Signe; Hagelin, Else Marie Valbjørn; Lauritzen, Fredrik; Attramadal, Håvard; Storm-Mathisen, Jon; Gjedde, Albert; Bergersen, Linda Hildegard. Lactate receptor sites link neurotransmission, neurovascular coupling, and brain energy metabolism. Cereb Cortex. Cerebral Cortex 2014 p. 2784-2795 OUS UiO |
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2013
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| 48. | Lauritzen, Knut Husø; Morland, Cecilie; Puchades, Maja Amedjkouh; Holm-Hansen, Signe; Hagelin, Else Marie Valbjørn; Lauritzen, Fredrik; Attramadal, Håvard; Storm-Mathisen, Jon; Gjedde, Albert; Bergersen, Linda Hildegard. Lactate Receptor Sites Link Neurotransmission, Neurovascular Coupling, and Brain Energy Metabolism. Cerebral Cortex 2013 OUS UiO |
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| 49. | Puchades, Maja Amedjkouh; Sogn, Carl Johan; Mæhlen, Jan; Bergersen, Linda Hildegard; Gundersen, Vidar. Unaltered lactate and glucose transporter levels in the MPTP mouse model of Parkinson's disease. Parkinson's Disease 2013 ;Volume 3.(3) p. 371-385 OUS UiO |
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| 50. | Sogn, Carl Johan; Puchades, Maja Amedjkouh; Gundersen, Vidar. Rare contacts between synapses and microglial processes containing high levels of Iba1 and actin - a postembedding immunogold study in the healthy rat brain. European Journal of Neuroscience 2013 ;Volume 38.(1) p. 2030-2040 OUS UiO |
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