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Showing results 1-50 of 114 << Previous 1 2 3    Next >>

2018
1 Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Haraldsen, Arthur Alexander Blørstad; Tarver, James E.; Suga, Hiroshi; Donoghue, Philip C.J.; Peterson, Kevin J.; Ruiz-Trillo, Iñaki; Grini, Paul Eivind; Shalchian-Tabrizi, Kamran.
Unicellular origin of the animal microRNA machinery. Current Biology 2018 ;Volume 28.(20) p. 3288-3295.e5
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2 Orr, Russell; Zhao, Sen; Klaveness, Dag; Yabuki, Akinori; Ikeda, Keiji; Makoto, Watanabe M.; Shalchian-Tabrizi, Kamran.
Enigmatic diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution. BMC Evolutionary Biology 2018 ;Volume 18:115. p. 1-13
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2017
3 Freeman, Mark A.; Fuss, Janina; Kristmundsson, Árni; Bjorbækmo, Marit Fredrikke Markussen; Mangot, Jean-Francois; del Campo, Javier; Keeling, Patrick J; Shalchian-Tabrizi, Kamran; Bass, David.
X-Cells Are Globally Distributed, Genetically Divergent Fish Parasites Related to Perkinsids and Dinoflagellates. Current Biology 2017 ;Volume 27.(11) p. 1645-1651
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4 Krabberød, Anders Kristian; Bjorbækmo, Marit Markussen; Shalchian-Tabrizi, Kamran; Logares, Ramiro.
Exploring the oceanic microeukaryotic interactome with metaomics approaches. Aquatic Microbial Ecology 2017 ;Volume 79.(1) p. 1-12
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5 Krabberød, Anders Kristian; Orr, Russell; Bråte, Jon; Kristensen, Tom; Bjørklund, Kjell Rasmus; Shalchian-Tabrizi, Kamran.
Single cell transcriptomics, mega-phylogeny and the genetic basis of morphological innovations in Rhizaria. Molecular biology and evolution 2017
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6 Orr, Russell; Rombauts, S; Van De Peer, Yves; Shalchian-Tabrizi, Kamran.
Erratum to "Draft Genome Sequences of Two Unclassified Bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, Isolated from Environmental Samples" [Genome Announc., 2017, 5 (34):e00894-17.] Doi: 10.1128/genomeA.00894-17.. Genome Announcements 2017 ;Volume 5.(41)
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7 Orr, Russell; Rombauts, Stephane; Van de Peer, Yves; Shalchian-Tabrizi, Kamran.
Draft genome sequences of two unclassified bacteria, Hydrogenophaga sp. strains IBVHS1 and IBVHS2, isolated from environmental samples. Genome Announcements 2017 ;Volume 5.(34)
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8 Orr, Russell; Rombauts, Stephane; Van de Peer, Yves; Shalchian-Tabrizi, Kamran.
Draft genome sequences of two unclassified bacteria, Sphingomonas sp. strains IBVSS1 and IBVSS2, isolated from environmental samples. Genome Announcements 2017 ;Volume 5:e00894-17.(34) p. 1-3
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9 Orr, Russell; Rombauts, Stephane; Van de Peer, Yves; Shalchian-Tabrizi, Kamran.
Draft genome sequences of two unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, isolated from environmental samples. Genome Announcements 2017 ;Volume 5.(33) p. 1-3
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10 Orr, Russell; Rombauts, Stephane; Van de Peer, Yves; Shalchian-Tabrizi, Kamran.
Erratum: "Draft genome sequences of two unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, isolated from environmental samples" [Genome Announc, 5, 33, (2017), (e00787-17)] DOI:10.1128/genomeA.00787-17. Genome Announcements 2017 ;Volume 5.(41:e01152-17) p. 1-1
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11 Orr, Russell; Shalchian-Tabrizi, Kamran; Van de Peer, Yves; Rombauts, S.
Draft Genome Sequences of Two Unclassified Bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, Isolated from Environmental Samples. Genome Announcements 2017 ;Volume 5.(34)
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12 Orr, Russell; Shalchian-Tabrizi, Kamran; Van de Peer, Yves; Rombauts, S.
Draft genome Sequences of two Unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, Isolated from Environmental Samples. Genome Announcements 2017
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2016
13 Evenstad, Andreas; Lieblein Røsæg, Line; Andresen, Ina Jungersen; Shalchian-Tabrizi, Kamran; Bråte, Jon.
Evolution of non-coding RNAs in ctenophores. EuroEvoDevo 2016; 2016-07-26 - 2016-07-29
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14 Forster, Dominik; Dunthorn, Micah; Mahé, Frédéric; Dolan, John R.; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Edvardsen, Bente; Egge, Elianne Dunthorn; Eikrem, Wenche; Gobet, Angélique; Kooistra, Wiebe H.C.F.; Logares, Ramiro; Massana, Ramon; Montresor, Marina; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C.; Romac, Sarah; Shalchian-Tabrizi, Kamran; Simon, Nathalie; Richards, Thomas A.; Santini, Sébastien; Sarno, Diana; Siano, Raffaele; Vaulot, Daniel; Wincker, Patrick; Zingone, Adriana; De Vargas, Colomban; Stoeck, Thorsten.
Benthic protists: The under-charted majority. FEMS Microbiology Ecology 2016 ;Volume 92.(8) p. 1-11
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15 Haraldsen, Arthur Alexander Blørstad; Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Grini, Paul Eivind; Shalchian-Tabrizi, Kamran.
Pre-metazoan origin of animal microRNAs. European Society of Evolutionary Developmental Biology; 2016-07-26 - 2016-07-29
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16 Lieblein Røsæg, Line; Evenstad, Andreas; Andresen, Ina Jungersen; Bråte, Jon; Shalchian-Tabrizi, Kamran.
Postembryonic development of Mnemiopsis leidyi inferred from gene expression data. EuroEvoDevo 2016; 2016-07-26 - 2016-07-29
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17 Orr, Russell; Zhao, Sen; Yabuki, Akinori; Shalchian-Tabrizi, Kamran.
PacBio sequencing reveals the diversity and ecology of a deeply diverging eukaryote lineage. EMBO | EMBL Symposium: A New Age of Discovery for Aquatic Microeukaryotes; 2016-01-26 - 2016-01-29
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2015
18 Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad; Shalchian-Tabrizi, Kamran.
Expanding our knowledge about parasites using PATHOS-DB (The PArasiTe–HOSt-DataBase). VII European Congress of Protistology; 2015-09-05 - 2015-09-10
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19 Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad; Shalchian-Tabrizi, Kamran.
HIDDEN PROTIST PARASITES: HOW CAN THEY BE DETECTED?. 2015 Aquatic Sciences Meeting - Aquatic Sciences: Global And Regional Perspectives — North Meets South;; 2015-02-22 - 2015-02-27
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20 Bråte, Jon; Adamski, Marcin; Neumann, Ralf Stefan; Shalchian-Tabrizi, Kamran; Adamska, Maja.
Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum. Proceedings of the Royal Society of London. Biological Sciences 2015 ;Volume 282.(1821) p. 1-9
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21 Fuss, Janina; Grønneberg, Estelle; Gylt, Torbjørn; Bjorbækmo, Marit Markussen; Mangot, Jean-Francois; Shalchian-Tabrizi, Kamran; Klaveness, Dag.
Pee, poo and parasitic protists - what is living inside the fish we eat?. VII European Congress of Protistology; 2015-09-05 - 2015-09-10
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22 Fuss, Janina; Mangot, Jean-Francois; Bjorbækmo, Marit Markussen; Freeman, Mark A.; Bass, David; Shalchian-Tabrizi, Kamran; Klaveness, Dag.
THE ENIGMATIC BASAL ALVEOLATE PARASITE X-CELL: CAN MULTIPLE GENOMIC APPROACHES REVEAL MORE?. 2015 Aquatic Sciences Meeting - Aquatic Sciences: Global And Regional Perspectives — North Meets South; 2015-02-22 - 2015-02-27
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23 Haraldsen, Arthur Alexander Blørstad; Bjorbækmo, Marit Markussen; Mangot, Jean-Francois; Fuss, Janina; Shalchian-Tabrizi, Kamran; Hansen, Haakon; Klaveness, Dag.
Protist diversity in a marine and lacustrine system: Patterns across a salinity gradient. 2015 Aquatic Sciences Meeting - Aquatic Sciences: Global And Regional Perspectives — North Meets South; 2015-02-22 - 2015-02-27
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24 Kumar, Surendra; Krabberød, Anders Kristian; Neumann, Ralf Stefan; Michalickova, Katerina; Zhao, Sen; Zhang, Xiaoli; Shalchian-Tabrizi, Kamran.
BIR pipeline for preparation of phylogenomic data. Evolutionary Bioinformatics 2015 ;Volume 11. p. 79-83
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25 Massana, Ramon; Gobet, Angelique; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Chambouvet, Aurélie; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Dolan, John R.; Dunthorn, Micah; Edvardsen, Bente; Forn, Irene; Forster, Dominik; Guillou, Laure; Jaillon, Olivier; Kooistra, Wiebe H. C. F.; Logares, Ramiro; Mahé, Frédéric; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C.; Probert, Ian; Romac, Sarah; Richards, Thomas; Santini, Sebastien; Shalchian-Tabrizi, Kamran; Siano, Raffaele; Simon, Nathalie; Stoeck, Thorsten; Vaulot, Daniel; Zingone, Adriana; de Vargas, Colomban.
Marine protist diversity in European coastal watersand sediments as revealed by high-throughputsequencing. Environmental Microbiology 2015 ;Volume 17.(10) p. 4035-4049
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2014
26 Enevoldsen, Emily; Liow, Lee Hsiang; Voje, Kjetil L.; Orr, Russell; Shalchian-Tabrizi, Kamran; Krabberød, Anders Kristian.
Macroevolution through molecular and morphological lenses: a history of microporellids. CEES Annual Student Conference; 2014-10-21 - 2014-10-22
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27 Logares, Ramiro; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Dolan, John R.; Dunthorn, Micah; Edvardsen, Bente; Gobet, Angelique; Kooistra, Wiebe H.C.F.; Mahé, Frédéric; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C.; Romac, Sarah; Shalchian-Tabrizi, Kamran; Simon, Nathalie; Stoeck, Thorsten; Santini, Sebastien; Siano, Raffaele; Wincker, Patrick; Zingone, Adriana; Richards, Thomas A.; de Vargas, Colomban; Massana, Ramon.
Patterns of Rare and Abundant Marine Microbial Eukaryotes. Current Biology 2014 ;Volume 24.(8) p. 813-821
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28 Neumann, Ralf Stefan; Kumar, Surendra; Haverkamp, Thomas Hendricus Augustus; Shalchian-Tabrizi, Kamran.
BLASTGrabber: A bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data. BMC Bioinformatics 2014 ;Volume 15.(128) p. -
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29 Neumann, Ralf Stefan; Kumar, Surendra; Shalchian-Tabrizi, Kamran.
BLAST output visualization in the new sequencing era. Briefings in Bioinformatics 2014 ;Volume 15.(4) p. 484-503
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2013
30 Demko, Viktor; Johansen, Wenche; Perroud, Pierre-francois; Liang, Zhe; Shalchian-Tabrizi, Kamran; Zhao, Sen; Olsen, Odd-Arne; Quatrano, Ralph S.; Wilson, Robert Charles.
The evolutionary history of eukaryotic calpains displays multiple variants of regulatory mechanisms for CysPc activity. Biology of Calpains in Health and Disease; 2013-07-21 - 2013-07-26
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31 Liang, Zhe; Demko, Viktor; Wilson, Robert Charles; Johnson, Kenneth; Ahmad, Rafi; Perroud, Pierre-Francois; Quatrano, Ralph; Zhao, Sen; Shalchian-Tabrizi, Kamran; Otegui, Marisa; Olsen, Odd-Arne; Johansen, Wenche.
The catalytic domain CysPc of the DEK1 calpain is functionally conserved in land plants. The Plant Journal 2013 ;Volume 75.(5) p. 742-754
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32 Zhao, Sen; Shalchian-Tabrizi, Kamran; Klaveness, Dag.
Sulcozoa revealed as a paraphyletic group in mitochondrial phylogenomics. Molecular Phylogenetics and Evolution 2013 ;Volume 69.(3) p. 462-468
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2012
33 Bråte, Jon; Krabberød, Anders Kristian; Dolven, Jane Karine Lønne; Ose, Randi Frida; Kristensen, Tom; Bjørklund, Kjell Rasmus; Shalchian-Tabrizi, Kamran.
Radiolaria Associated with Large Diversity of Marine Alveolates. Protist 2012 ;Volume 163.(5) p. 767-777
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34 Demko, Viktor; Ako, Ako Eugene; Perroud, Pierre-Francois; Liang, Zhe; Johansen, Wenche; Wilson, Robert; Shalchian-Tabrizi, Kamran; Thiede, Bernd; Quatrano, Ralph; Olsen, Odd-Arne.
Searching for cellular targets of the plant calpain DEK1. Moss 2012; 2012-06-16 - 2012-06-18
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35 Espelund, Mari; Minge, Marianne Aastebøl; Gabrielsen, Tove M; Nederbragt, Alexander Johan; Shalchian-Tabrizi, Kamran; Otis, Christian; Turmel, Monique; Lemieux, Claude; Jakobsen, Kjetill Sigurd.
Genome Fragmentation Is Not Confined to the Peridinin Plastid in Dinoflagellates. PLoS ONE 2012 ;Volume 7.(6) p. -
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36 Liang, Zhe; Demko, Viktor; Zhao, Sen; Wilson, Robert; Shalchian-Tabrizi, Kamran; Johansen, Wenche; Olsen, Odd-Arne.
The DEK1 protein evolved from an ancient form of membrane bound calpain and is highly conserved in land plants. PlantBio 2012; 2012-10-17 - 2012-10-18
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37 Liang, Zhe.
The DEK1 protein evolved from an ancient form of membrane bound calpain and is highly conserved in land plants. : Norwegian University of Life Sciences 2012 (ISBN 978-82-575-1083-1) 172 p.
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38 Suga, Hiroshi; Dacre, Michael; de Mendoza, Alex; Shalchian-Tabrizi, Kamran; Manning, G; Ruiz-Trillo, Iñaki.
Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases. Science Signaling 2012 ;Volume 5.(222) p. -
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39 Tidemann, Grethe; Shalchian-Tabrizi, Kamran; Vrålstad, Trude; Carlsen, Tor.
Hvordan skape et toppforskningsmiljø på under fem år. Uniforum [Newspaper] 2012-03-20
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40 Torruella, Guifré; Derelle, Romain; Paps, Jordi; Lang, B. Franz; Roger, Andrew J.; Shalchian-Tabrizi, Kamran; Ruiz-Trillo, Iñaki.
Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains. Molecular biology and evolution 2012 ;Volume 29.(2) p. 531-544
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41 Zhao, Sen; Burki, Fabien; Bråte, Jon; Keeling, Patrick J; Klaveness, Dag; Shalchian-Tabrizi, Kamran.
Collodictyon - An Ancient Lineage in the Tree of Eukaryotes. Molecular biology and evolution 2012 ;Volume 29.(6) p. 1557-1568
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42 Zhao, Sen; Liang, Zhe; Demko, Viktor; Wilson, Robert; Johansen, Wenche; Olsen, Odd-Arne; Shalchian-Tabrizi, Kamran.
Massive expansion of the calpain gene family in unicellular eukaryotes. BMC Evolutionary Biology 2012 ;Volume 12.(193) p. -
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2011
43 Demko, Viktor; Perroud, Pierre-Francois; Johansen, Wenche; Wilson, Robert Charles; Liang, Zhe; Shalchian-Tabrizi, Kamran; Olsen, Odd-Arne.
The DEK1 and CRINKLY4 proteins play a fundamental role in the development of land plants - from Arabidopsis back to the moss Physcomitrella patens. 10th Norwegian Arabidopsis Meeting; 2011-12-01 - 2011-12-01
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44 Gabrielsen, Tove M; Minge, Marianne Aastebøl; Espelund, Mari; Tooming-Klunderud, Ave; Patil, Viswanath; Nederbragt, Alexander Johan; Otis, Christian; Turmel, Monique; Shalchian-Tabrizi, Kamran; Lemieux, Claude; Jakobsen, Kjetill Sigurd.
Genome Evolution of a Tertiary Dinoflagellate Plastid. PLoS ONE 2011 ;Volume 6.(4) p. e19132-
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45 Johansen, Wenche; Liang, Zhe; Demko, Viktor; Zhao, Sen; Wilson, Robert Charles; Shalchian-Tabrizi, Kamran; Olsen, Odd-Arne.
Dek1 calpain evolution. 10th Norwegian Arabidopsis Meeting; 2011-12-01 - 2011-12-01
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46 Klaveness, Dag; Bråte, Jon; Patil, Viswanath; Shalchian-Tabrizi, Kamran; Kluge, Ragnhild; Gislerød, Hans Ragnar; Jakobsen, Kjetill Sigurd.
The 18S and 28S rDNA indentity and phylogeny of the common lotic chrysophyte Hydrurus foetidus. European journal of phycology 2011 ;Volume 46.(3) p. 282-291
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47 Krabberød, Anders Kristian; Bråte, Jon; Dolven, Jane Karine Lønne; Ose, Randi Frida; Klaveness, Dag; Kristensen, Tom; Bjørklund, Kjell Rasmus; Shalchian-Tabrizi, Kamran.
Radiolaria Divided into Polycystina and Spasmaria in Combined 18S and 28S rDNA Phylogeny. PLoS ONE 2011 ;Volume 6.(8)
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48 Kumar, Surendra; Carlsen, Tor; Mevik, Bjørn-Helge; Enger, Pål; Blaalid, Rakel; Shalchian-Tabrizi, Kamran; Kauserud, Håvard.
CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation. BMC Bioinformatics 2011 ;Volume 12.
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49 Liang, Zhe; Demko, Viktor; Zhao, Sen; Wilson, Robert Charles; Shalchian-Tabrizi, Kamran; Olsen, Odd-Arne; Johansen, Wenche.
The calpain module of the DEK1 protein from the moss Physcomitrella functionally complements the Arabidopsis dek1-3 mutant. 10th Norwegian Arabidopsis Meeting; 2011-12-01 - 2011-12-01
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50 Perroud, Pierre-Francois; Wilson, Robert Charles; Demko, Viktor; Liang, Zhe; Johansen, Wenche; Shalchian-Tabrizi, Kamran; Cove, D.J.; Olsen, Odd-Arne; Quatrano, R.S..
Multiple roles for DEK1 in Physcomitrella patens. The Moss 2011; 2011-09-11 - 2011-09-15
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