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2020
1 Aarestrup, FM; Albeyatti, A; Armitage, W; Auffray, C; Augello, L; Balling, Rudi; Benhabiles, N; Bertolini, Guido; Bjaalie, Jan G.; Black, Merja; Blomberg, N.; Bogaert, P; Bubak, M; Claerhout, B; Clarke, Leon; De Meulder, B; D'Errico, G; Di Meglio, A; Forgo, N; Gans-Combe, C; Gray, AE; Gut, I; Gyllenberg, Alexandra; Hemmrich-Stanisak, G; Hjorth, L; Ioannidis, Yannis; Jarmalaite, S; Kel, A; Kherif, F; Korbel, Jan O.; Larue, C; Laszlo, Marton; Maas, Andrew; Magalhaes, Livia; Manneh-Vangramberen, I; Morley-Fletcher, E; Ohmann, Christian; Oksvold, P; Oxtoby, NP; Perseil, Isabelle; Pezoulas, V; Riess, O; Riper, Heleen; Roca, J; Rosenstiel, P; Sabatier, Pierre; Sanz, F.; Tayeb, M; Thomassen, Gard O Sundby; Van Bussel, J; Van den Bulcke, Marc; Van Oyen, Herman.
Towards a European health research and innovation cloud (HRIC).. Genome Medicine 2020 ;Volume 12.(1)
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2 Adams, Amy; Albin, Stephanie; Amunts, Katrin; Asakawa, Tasia; Bernard, Amy; Bjaalie, Jan G.; Chakli, Khaled; Deshler, James; De Koninck, Yves; Ebell, Christoph; Egan, Gary; Hale, Melina E; Häusser, Michael; Jeong, Sung-Jin; lles, Judy; Lanyon, Linda; Li, Pingping; Li, Yan; Magistretti, Pierre; McMahon, Agnes; Montojo, Caroline; Ohtsuka, Toshihisa; Okabe, Shigeo; Okano, Hideyuki; Pei, Gang; Pouget, Alexandre; Reindorp, Jason; Richards, Linda J.; Rommelfanger, Karen S.; Sajda, Paul; Scobie, Kimberly N.; Suh, Pann-Ghill; Tanaka, Keiji; Thiels, Edda; Valdes-Sosa, Pedro; Welchman, Andrew E.; White, Samantha; Wilson, Gary; Yuste, Rafael; Zhang, Xu; Zheng, Jialin.
International Brain Initiative: An Innovative Framework for Coordinated Global Brain Research Efforts.. Neuron 2020 ;Volume 105.(2) p. 212-216
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3 Bjerke, Ingvild Elise; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B..
Database of literature derived cellular measurements from the murine basal ganglia. Scientific Data 2020 (7)
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2019
4 Amunts, Katrin; Knoll, Alois C; Lippert, Thomas; Pennartz, Cyriel M.A.; Ryvlin, Philippe; Destexhe, Alain; Jirsa, Viktor K; D'Angelo, Egidio; Bjaalie, Jan G..
The Human Brain Project?Synergy between neuroscience, computing, informatics, and brain-inspired technologies. PLoS Biology 2019 ;Volume 17.(7)
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5 Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Schlegel, Ulrike; Oliver, Schmid; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G..
EBRAINS fair data service: A novel infrastructure for making neuroscience data findable, accessible, interoperable, and reuseable. Sfn 2019; 2019-10-19 - 2019-10-24
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6 Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Zehl, Lyuba; Bjerke, Ingvild Elise; Schmid, Oliver; Øvsthus, Martin; Aasebø, Ida Elisabeth Jørgensen; Yates, Sharon Christine; Schlegel, Ulrike; Legouée, Elodie; Abrams, Mathew; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G..
Neuroinformatics platform for making neuroscience data Findable, Accessible, Interoperable, and Reuseable. INCF Conference 2019; 2019-08-31 - 2019-09-02
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7 Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Zarfarnia, Sara; Köhnen, Stefan; Hilverling, Anna; Kleven, Heidi; Bjerke, Ingvild Elise; Schmid, Oliver; Øvsthus, Martin; Yates, Sharon Christine; Schlegel, Ulrike; Legouée, Elodie; Abrams, Mathew; Puchades, Maja; Davison, Andrew; Dickscheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G..
Resources for making neuroscience data FAIR. The Human Brain Project invites researchers to share, find, and use data via the new EBRAINS infrastructure. Nordic neuroscience 2019; 2019-06-12 - 2019-06-12
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8 Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Kleven, Heidi; Schlegel, Ulrike; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B..
Find and explore rodent brain data using 3D atlases in the new EBRAINS infrastructure. Neuroscience 2019; 2019-10-19 - 2019-10-23
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9 Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Kleven, Heidi; Schlegel, Ulrike; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B..
Infrastructure and workflow for integrating and navigating multi-scale and multi-modal murine neuroscience data using 3D digital brain reference atlases. Neuroinformatics 2019; 2019-09-01 - 2019-09-02
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10 Lillehaug, Sveinung; Yetman, Michael J.; Puchades, Maja; Checinska, Martyna; Kleven, Heidi; Jankowsky, Joanna L.; Bjaalie, Jan G.; Leergaard, Trygve B..
Data Descriptor: Brain-wide distribution of reporter expression in five transgenic tetracyclinetransactivator mouse lines. Scientific Data 2019 ;Volume 6. p. 1-15
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11 Puchades, Maja; Csúcs, Gergely; Ledergerber, Debora; Leergaard, Trygve B.; Bjaalie, Jan G..
Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool. PLOS ONE 2019 ;Volume 14.(5)
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12 Puchades, Maja; Yates, Sharon Christine; Groeneboom, Nicolaas; Csúcs, Gergely; Leergaard, Trygve B.; Bjaalie, Jan G..
Workflow for quantification and spatial analysis of labeling in large series of histological images from murine brains. Society for Neurosciences annual meeting; 2019-10-19 - 2019-10-23
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13 Sand, Olav; Sjaastad, Øystein; Haug, Egil; Bjaalie, Jan G..
Anatomi og fysiologi - Menneskekroppen, 4. utgave. København: Gads forlag 2019 (ISBN 9788712058328) 666 p.
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14 Schlegel, Ulrike; Blixhavn, Camilla Hagen; Andersson, Krister Andreas; Yates, Sharon Christine; Øvsthus, Martin; Bjerke, Ingvild Elise; Kleven, Heidi; Groeneboom, Nicolaas Ervik; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B..
Integrating and analysing heterogeneous rodent neuroscience data using three-dimensional brain reference atlases. Nordic Neuroscience; 2019-06-12
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15 Yates, Sharon Christine; Groeneboom, Nicolaas; Csúcs, Gergely; Leergaard, Trygve B.; Puchades, Maja; Bjaalie, Jan G..
Batch quantification and spatial analysis of labelling in microscopic rodent brain sections. Neuroinformatics 2019; 2019-09-01 - 2019-09-02
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16 Yates, Sharon Christine; Groeneboom, Nicolaas Ervik; Coello, Christopher; Lichtenthaler, Stefan F.; Kuhn, Peer-Hendrik; Demuth, Hans-Ulrich; Hartlage-Rübsamen, Maike; Rossner, Steffen; Leergaard, Trygve B.; Kreshuk, Anna; Puchades, Maja; Bjaalie, Jan G..
QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain. Frontiers in Neuroinformatics 2019 ;Volume 13.
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2018
17 Bjerke, Ingvild Elise; Øvsthus, Martin; Papp, Eszter Agnes; Yates, Sharon Christine; Silvestri, L; Fiorilli, J; Pennartz, CMA; Pavone, FS; Puchades, Maja; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Data integration through brain atlasing: Human Brain Project tools and strategies. European psychiatry 2018 ;Volume 50. p. 70-76
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18 Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Zehl, Lyuba; Markovic, Milica; Kleven, Heidi; Zafarnia, Sara; Köhnen, Stefan; Legouée, Elodie; Puchades, Maja; Schmid, Oliver; Davison, Andrew P.; Muller, Jeff; Dicksheid, Timo; Leergaard, Trygve B.; Bjaalie, Jan G..
HBP Curation service: Share your data via the Neuroinformatics platform. Human Brain Project Summit; 2018-10-16 - 2018-10-18
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19 Bjaalie, Jan G..
Data sharing in neuroscience: traditions, standards, and transformations. Workshop on Data Governance in International Neuro-ICT Collaborations; 2018-03-20 - 2018-03-21
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20 Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Bjaalie, Jan G.; Leergaard, Trygve B..
Best practices for determining and documenting neuroanatomical locations in the rodent brain. FENS forum 2018; 2018-07-07
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21 Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister Andreas; Blixhavn, Camilla Hagen; Kleven, Heidi; Yates, Sharon Christine; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B..
Navigating the Murine Brain: Toward Best Practices for Determining and Documenting Neuroanatomical Locations in Experimental Studies. Frontiers in Neuroanatomy 2018 ;Volume 12.
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22 Blixhavn, Camilla Hagen; Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Kleven, Heidi; Puchades, Maja; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Data integration through digital brain atlasing: Making diverse neuroscience data discoverable using Human Brain Project infrastructure. FENS Forum; 2018-07-07 - 2018-07-11
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23 Heiland, Tina; Zeitschel, Ulrike; Puchades, Maja; Kuhn, Peer-Hendrik; Lichtenthaler, Stefan F.; Bjaalie, Jan G.; Hartlage-Rübsamen, Maike; Roßner, Steffen; Höfling, Corinna.
Defined astrocytic expression of human amyloid precursor protein in Tg2576 mouse brain. Glia 2018 ;Volume 67.(2) p. 393-403
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24 Papp, Eszter Agnes.
Volumetric atlasing in the rodent brain: connecting experimental image data to standard anatomical space. : Faculty of Medicine, University of Oslo 2018 (ISBN 978-82-8377-194-7) 147 p.
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25 Plank, Anne-Christine; Canneva, Fabio; Raber, Kerstin; Urbach, Yvonne K; Dobner, Julia; Puchades, Maja; Bjaalie, Jan G.; Gillmann, Clarissa; Bäuerle, Tobias; Riess, Olaf; Nguyen, Hoa H.P.; von Hörsten, Stephan.
Early Alterations in Operant Performance and Prominent Huntingtin Aggregation in a Congenic F344 Rat Line of the Classical CAGn51trunc Model of Huntington Disease.. Frontiers in Neuroscience 2018 ;Volume 12.
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26 Sand, Olav; Sjaastad, Øystein; Haug, Egil; Bjaalie, Jan G..
Menneskekroppen - Fysiologi og anatomi, 3. utgave. Gyldendal Akademisk 2018 (ISBN 978-82-05-50482-0) 666 p.
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27 Sjaastad, Øystein; Toverud, Kari C.; Sand, Olav; Bjaalie, Jan G.; Egil, Haug.
Arbeidsbok til Menneskekroppen - Fysiologi og anatomi, 3. utgave. Gyldendal Akademisk 2018 (ISBN 978-82-05-51403-4) 224 p.
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28 von Linstow, Christian Ulrich; Yates, Sharon Christine; Leergaard, Trygve B.; Plank, A-C; von Hörsten, S.; Puchades, Maja; Bjaalie, Jan G..
Whole brain analysis of Huntingtin aggregates in the F344 transgenic rat model of Huntington’s disease. FENS forum 2018; 2018-07-07 - 2018-07-11
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29 Yates, Sharon Christine; Puchades, Maja; kreshuk, anna; Kutra, Dominik; Leergaard, Trygve B.; Bjaalie, Jan G.; Groeneboom, Nicolaas.
HBP Analytic Workflow: from Microscopic Image Data to Extracted Features in Atlas Space. Human Brain Project annual summit; 2018-10-15 - 2018-10-18
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30 Zehl, Lyuba; Zafarnia, Sara; Köhnen, Stefan; Andersson, Krister Andreas; Markovic, Milica; Legouée, Elodie; Blixhavn, Camilla Hagen; Kleven, Heidi; Gui, Xiaoyun; Chervakov, Pavel; Schmid, Oliver; Bell, Simon; Gillespie, Tom; Abrams, Matthew; Davison, Andrew P.; Muller, Jeff; Leergaard, Trygve B.; Amunts, K; Bjaalie, Jan G.; Dicksheid, Timo.
Integrating neuroscientific data into a unified database: from individual experiments to a standardized metadata collection using the Human Brain Project Neuroinformatics Platform. Bernstein Conference; 2018-09-26 - 2018-09-28
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31 Zehl, Lyuba; Zafarnia, Sara; Köhnen, Stefan; Andersson, Krister Andreas; Markovic, Milica; Legouée, Elodie; Blixhavn, Camilla Hagen; Kleven, Heidi; Gui, Xiaoyun; Chervakov, Pavel; Schmid, Oliver; Bell, Simon; Gillespie, Tom; Abrams, Matthew; Davison, Andrew P.; Muller, Jeff; Leergaard, Trygve B.; Amunts, K; Bjaalie, Jan G.; Dicksheid, Timo.
Integrating neuroscientific data into a unified database: from individual experiments to a standardized metadata collection using the Human Brain Project Neuroinformatics Platform. Human Brain Project Summit; 2018-10-16 - 2018-10-18
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32 Øvsthus, Martin; Bjerke, Ingvild Elise; Yates, Sharon Christine; Bjaalie, Jan G.; Leergaard, Trygve Brauns.
Mapping topographical organization in mouse brain subcortical axonal projections using Human Brain Project infrastructure. FENS forum 2018; 2018-07-07 - 2018-07-11
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2017
33 Imad, Jala; Kleven, Heidi; Clascá, Francisco; Wennberg, Arvind Eirik; Osen, Kirsten Kjelsberg; Coello, Sebastian Christopher; Csúcs, Gergely; Papp, Eszter Agnes; Witter, Menno; Bjaalie, Jan G.; Leergaard, Trygve B..
Enriching and adding detail to the Waxholm Space rat brain reference atlas. Human Brain Project annual summit; 2017-10-17 - 2017-10-20
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34 Andersson, Krister Andreas; Bell, Simon; Bjerke, Ingvild Elise; Øvsthus, Martin; Blixhavn, Camilla Hagen; Kleven, Heidi; Puchades, Maja; Suzen, M; Denker, Michael; Davison, A.; Grün, Sonja; Leprince, Y; Dickscheid, Timo; McMurtrie, C; Telefont, Martin; Muller, Jeff; Leergaard, Trygve B.; Bjaalie, Jan G..
Submitting data and metadata through the HBP Data Workbench: Concepts, data flows, policies, and best practices. Human Brain Project annual summit; 2017-10-17 - 2017-10-20
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35 Andersson, Krister; Øvsthus, Martin; Bjerke, Ingvild Elise; Puchades, Maja; Telefont, Martin; Jeff, Muller; Dickscheid, Timo; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Data integration through digital brain atlasing: Human Brain Project infrastructure. Society for Neuroscience annual meeting; 2017-11-11 - 2017-11-16
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36 Bjaalie, Jan G..
Infrastructure for digital brain atlasing: storing, organizing, visualizing and analyzing large quantities of heterogeneous neuroscience research data. INCF Node Workshop; 2017-05-29 - 2017-05-30
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37 Bjerke, Ingvild Elise; Andersson, Krister Andreas; Øvsthus, Martin; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve B..
Navigating the rodent brain: Best practice recommendations for determining and documenting spatial location for neuroscience data. Nordic Neuroscience meeting; 2017-06-07 - 2017-07-09
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38 Bjerke, Ingvild Elise; Andersson, Krister; Øvsthus, Martin; Puchades, Maja; Bjaalie, Jan G.; Leergaard, Trygve Brauns.
Determining and documenting the anatomical location of experimental neuroscience data: Best practice recommendations. Society for Neuroscience annual meeting; 2017-11-11 - 2017-11-16
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39 Coello, Sebastian Christopher; Leergaard, Trygve B.; Bjaalie, Jan G..
Tackling the normalization of 2-D rodent histology sections in a 3-D coordinate space. Neuroinformatics 2017; 2017-08-20 - 2017-08-21
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40 Coello, Sebastian Christopher; Leergaard, Trygve B.; Bjaalie, Jan G..
Tackling the normalization of 2-D rodent histology sections in a 3-D coordinate space. Society for Neuroscience annual meeting; 2017-11-11 - 2017-11-16
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41 Dempsey, Bowen; Le, Sheng; Turner, Anita; Bokiniec, Phil; Ramadas, Radhika; Bjaalie, Jan G.; Menuet, Clement; Neve, Rachael; Allen, Andrew M; Goodchild, Ann K; McMullan, Simon.
Mapping and analysis of the connectome of sympathetic premotor neurons in the rostral ventrolateral medulla of the rat using a volumetric brain atlas. Frontiers in Neural Circuits 2017 ;Volume 11.
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42 Imad, Jala; Osen, Kirsten Kjelsberg; Clascá, Francisco; Wennberg, Arvind E.; Coello, Sebastian Christopher; Csúcs, Gergely; Papp, Eszter Agnes; Bjaalie, Jan G.; Leergaard, Trygve Brauns.
Enriching and Adding Detail to the Waxholm Space Rat Brain Reference Atlas. Neuroscience 2017; 2017-11-13
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43 Leprince, Y; Coello, Sebastian Christopher; Csúcs, Gergely; Chervakov, P; Darine, Dmitri Aleksandrovitsj; Øvsthus, Martin; Bjerke, Ingvild Elise; Yates, Sharon Christine; Puchades, Maja; Leergaard, Trygve B.; Dickscheid, Timo; Bjaalie, Jan G..
Interactive tools for registering of 2D and 3D images to reference atlases. Human Brain Project annual summit; 2017-10-17 - 2017-10-20
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44 Puchades, Maja; Csúcs, Gergely; Checinska, Martyna; Øvsthus, Martin; Bjerke, Ingvild Elise; Andersson, Krister; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Neuroinformatics tool and workflow for anchoring of serial histological images in rodent brain 3D space. Society for Neuroscience annual meeting; 2017-11-11 - 2017-11-16
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45 Puchades, Maja; Øvsthus, Martin; Bjerke, Ingvild Elise; Andersson, Krister; Csúcs, Gergely; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Data integration through digital brain atlasing: semiautomatic spatial registration of serial histological images to rodent brain 3D reference atlases. Nordic Neuroscience meeting; 2017-06-07 - 2017-06-09
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46 Yates, Sharon Christine; Puchades, Maja; Coello, Sebastian Christopher; Kreshuk, Anna; Hartlage-Rübsamen, Maike; Rossner, Steffen; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Workflow for automated quantification and spatial analysis of labeling in microscoping rodent brain sections. Society for Neuroscience annual meeting; 2017-11-11 - 2017-11-16
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47 Yates, Sharon Christine; Puchades, Maja; Coello, Sebastian Christopher; Kreshuk, Anna; Hartlage-Rübsamen, Maike; Rossner, Steffen; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Workflow for automated quantification and spatial analysis of labelling in microscoping rodent brain sections. HBP annual meeting 2017; 2017-10-16 - 2017-10-22
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2016
48 Papp, Eszter Agnes; Leergaard, Trygve Brauns; Csúcs, Gergely; Bjaalie, Jan G..
Brain-wide mapping of axonal connections: Workflow for automated detection and spatial analysis of labeling in microscopic sections. Frontiers in Neuroinformatics 2016 ;Volume 10.(11)
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49 Puchades, Maja; Bjerke, Ingvild Elise; Øvsthus, Martin; Andersson, Krister; Csúcs, Gergely; Leergaard, Trygve Brauns; Bjaalie, Jan G..
Spatial registration of serial histological image data to reference brain atlases. HBP annual meeting 2016; 2016-10-11 - 2016-10-15
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50 Schubert, N; Axer, M; Schober, M; Huynh, A; Huysegoms, M; Palomero-Gallagher, N; Bjaalie, Jan G.; Leergaard, Trygve Brauns; Kirlangic, Mehmet E.; Amunts, K; Zilles, Karl.
3D reconstructed cyto-, muscarinic M&lt;sub&gt;2&lt;/sub&gt; receptor, and fiber architecture of the rat brain registered to the waxholm space atlas. Frontiers in Neuroanatomy 2016 ;Volume 10.(MAY)
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