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1 Briand, Nolwenn; Collas, Philippe.
Lamina-associated domains: Peripheral matters and internal affairs. Genome Biology 2020 ;Volume 21:85. p. 1-25
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2 Brunet, Annaëlle; Forsberg, Anna Frida; Fan, Qiong; Sæther, Thomas; Collas, Philippe.
Nuclear lamin B1 interactions with chromatin during the circadian cycle are uncoupled from periodic gene expression. Frontiers in Genetics 2019 ;Volume 10.
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3 Collas, Philippe; Liyakat Ali, Tharvesh Moideen; Brunet, Annaëlle; Germier, Thomas.
Finding friends in the crowd: Three-dimensional cliques of topological genomic domains. Frontiers in Genetics 2019 ;Volume 10:602. p. 1-11
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4 Forsberg, Frida; Brunet, Annaëlle; Liyakat Ali, Tharvesh Moideen; Collas, Philippe.
Interplay of lamin A and lamin B LADs on the radial positioning of chromatin. Nucleus 2019 ;Volume 10.(1) p. 7-20
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5 Ménard, C; Dulong, J; Roulois, D; Hébraud, B; Verdière, L; Pangault, C; Sibut, V; Bezier, I; Bescher, N; Monvoisin, C; Gardelorge, M; Bertheuil, N; Flécher, E; Casteilla, Louis; Collas, Philippe; Sensebé, Luc; Bourin, P; Espagnolle, N; Tarte, K.
Integrated Transcriptomic, Phenotypic, and Functional Study Reveals Tissue-Spesific Immune Properties of Mesenchymal Stromal Cells.. Stem Cells 2019
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6 Paulsen, Jonas; Liyakat Ali, Tharvesh Moideen; Nekrasov, Maxim; Delbarre, Erwan; Baudement, Marie-Odile; Kurscheid, Sebastian; Tremethick, David; Collas, Philippe.
Long-range interactions between topologically associating domains shape the four-dimensional genome during differentiation. Nature Genetics 2019 ;Volume 51.(5) p. 835-843
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7 Spirkoski, Jane; Shah, Akshay; Reiner, Andrew Henry; Collas, Philippe; Delbarre, Erwan.
PML modulates H3.3 targeting to telomeric and centromeric repeats in mouse fibroblasts. Biochemical and Biophysical Research Communications - BBRC 2019 ;Volume 511.(4) p. 882-888
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8 Toribio-Fernández, R; Herrero-Fernandez, B; Zorita, V; López, JA; Vázquez, J; Criado, G; Pablos, JL; Collas, Philippe; Sanchez-Madrid, F; Andrés, V; Gonzalez-Granado, JM.
Lamin A/C deficiency in CD4+ T-cells enhances regulatory T-cells and prevents inflammatory bowel disease.. Journal of Pathology 2019 ;Volume 249.(4) p. 509-522
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9 Briand, Nolwenn; Cahyani, Inswasti; Madsen-Østerbye, Julia-Kristina Jensen; Paulsen, Jonas; Rønningen, Torunn; Sørensen, Anita Løvstad; Collas, Philippe.
Lamin A, Chromatin and FPLD2:Not ust a Peripheral Ménage-à-Trois.. Frontiers in Cell and Developmental Biology 2018 ;Volume 6. p. -
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10 Briand, Nolwenn; Collas, Philippe.
Laminopathy-causing lamin A mutations reconfigure lamina-associated domains and local spatial chromatin conformation. Nucleus 2018 ;Volume 9.(1) p. 216-226
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11 Briand, Nolwenn; Guénantin, Anne-Claire; Jeziorowska, Dorota; Shah, Akshay; Mantecon, Matthieu; Capel, Emilie; Garcia, Maria; Oldenburg, Anja; Paulsen, Jonas; Hulot, Jean-Sébastien; Vigouroux, Corinne; Collas, Philippe.
The lipodystrophic hotspot lamin A p.R482W mutation deregulates the mesodermal inducer T/Brachyury and early vascular differentiation gene networks. Human Molecular Genetics 2018 ;Volume 27.(8) p. 1447-1459
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12 La Cour Poulsen, Lars; Edelmann, Reidunn Jetne; Krüger, Stig; Diéguez-Hurtado, Rodrigo; Shah, Akshay; Stav-Noraas, Tor Espen; Renzi, Anastasia; Szymanska, Monika; Wang, Junbai; Ehling, Manuel; Benedito, Rui; Kasprzycka, Monika; Bækkevold, Espen Sønderaal; Sundnes, Olav; Midwood, Kim S.; Scott, Helge; Collas, Philippe; Siebel, Christian W.; Adams, Ralf H.; Haraldsen, Guttorm; Sundlisæter, Eirik; Hol, Johanna.
Inhibition of endothelial NOTCH1 signaling attenuates inflammation by reducing cytokine-mediated histone acetylation at inflammatory enhancers. Arteriosclerosis, Thrombosis and Vascular Biology 2018 ;Volume 38.(4) p. 854-869
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13 Meier, Michael; Grant, Jenny; Dowdle, Amy; Thomas, Armarni; Gerton, Jennifer; Collas, Philippe; O`Sullivan, Justin M; Horsfield, Julia A.
Cohesin facilitates zygotic genome activation in zebrafish. Development 2018 ;Volume 145.(1)
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14 Paulsen, Jonas; Liyakat Ali, Tharvesh Moideen; Collas, Philippe.
Computational 3D genome modeling using Chrom3D. Nature Protocols 2018 ;Volume 13.(5) p. 1137-1152
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15 Rogne, Marie; Chu, Dinh Toi; Küntziger, Thomas M.; Mylonakou, Maria-Niki; Collas, Philippe; Tasken, Kjetil.
OPA1-anchored PKA phosphorylates perilipin 1 on S522 and S497 in adipocytes differentiated from human adipose stem cells. Molecular Biology of the Cell 2018 ;Volume 29.(12) p. 1487-1501
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16 Udugama, Maheshi; Sanij, Elaine; Voon, Hsiao P.J.; Son, Jinbae; Hii, Linda; Henson, Jeremy D.; Lyn Chan, F.; Chang, Fiona T.M.; Liu, Yumei; Pearson, Richard B.; Kalitsis, Paul; Mann, Jeffrey R.; Collas, Philippe; Hannan, Ross D.; Wong, Lee H..
Ribosomal DNA copy loss and repeat instability in ATRX-mutated cancers. Proceedings of the National Academy of Sciences of the United States of America 2018 ;Volume 115.(18) p. 4737-4742
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17 Delbarre, Erwan; Ivanauskiene, Kristina; Spirkoski, Jane; Shah, Akshay; Vekterud, Kristin; Moskaug, Jan Øivind; Bøe, Stig Ove; Wong, Lee H.; Küntziger, Thomas M.; Collas, Philippe.
PML protein organizes heterochromatin domains where it regulates histone H3.3 deposition by ATRX/DAXX. Genome Research 2017 ;Volume 27.(6) p. 913-921
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18 Garcia-Nieto, Pablo E; Schwartz, Erin K; King, Devin A; Paulsen, Jonas; Collas, Philippe; Herrera, Rafael E; Morrison, Ashby J.
Carcinogen susceptibility is regulated by genome architecture and predicts cancer mutagenesis. EMBO Journal 2017 ;Volume 36.(19) p. 2829-2843
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19 Guénantin, Anne-Claire; Briand, Nolwenn; Capel, Emilie; Dumont, Florent; Morichon, Romain; Provost, Claire; Stillitano, Francesca; Jeziorowska, Dorota; Siffroi, Jean-Pierre; Hajjar, Roger J.; Fève, Bruno; Hulot, Jean-Sébastien; Collas, Philippe; Capeau, Jacqueline; Vigouroux, Corinne.
Functional human beige adipocytes from induced pluripotent stem cells. Diabetes 2017 ;Volume 66.(6) p. 1470-1478
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20 Holm, Kristine Lillebø; Syljuåsen, Randi G.; Hasvold, Grete; Alsøe, Lene; Nilsen, Hilde Loge; Ivanauskiene, Kristina; Collas, Philippe; Shaposhnikov, Sergey; Collins, Andrew Richard; Indrevær, Randi Larsen; Aukrust, Pål; Fevang, Børre; Blomhoff, Heidi Kiil.
TLR9 stimulation of B-cells induces transcription of p53 and prevents spontaneous and irradiation-induced cell death independent of DNA damage responses. Implications for Common variable immunodeficiency. PLOS ONE 2017 ;Volume 12.(10)
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21 Lopez Soop, Graciela; Rønningen, Torunn; Rogala, Agnieszka; Richartz, Nina; Blomhoff, Heidi Kiil; Thiede, Bernd; Collas, Philippe; Küntziger, Thomas M..
AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint. Cell Cycle 2017 ;Volume 16.(10) p. 947-956
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22 López-Soop, Graciela; Rønningen, Torunn; Rogala, Agnieszka; Richartz, Nina; Blomhoff, Heidi Kiil; Thiede, Bernd; Collas, Philippe; Küntziger, Thomas M..
AKAP95 interacts with nucleoporin TPR in mitosis and is important for the spindle assembly checkpoint.. Cell Cycle 2017 ;Volume 16.(10) p. 947-956
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23 Oldenburg, Anja; Briand, Nolwenn; Sørensen, Anita Løvstad; Cahyani, Inswasti; Shah, Akshay; Moskaug, Jan Øivind; Collas, Philippe.
A lipodystrophy-causing lamin A mutant alters conformation and epigenetic regulation of the anti-adipogenic MIR335 locus. Journal of Cell Biology 2017 ;Volume 216.(9) p. 2731-2743
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24 Paulsen, Jonas; Sekelja, Monika; Oldenburg, Anja; Barateau, Alice; Briand, Nolwenn; Delbarre, Erwan; Shah, Akshay; Sørensen, Anita Løvstad; Vigouroux, Corinne; Buendia, Brigitte; Collas, Philippe.
Chrom3D: Three-dimensional genome modeling from Hi-C and nuclear lamin-genome contacts. Genome Biology 2017 ;Volume 18:21. p. 1-15
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25 Zink, Lisa-Maria; Delbarre, Erwan; Eberl, H Christian; Keilhauer, Eva C; Bonisch, Clemens; Punzeler, Sebastian; Bartkuhn, Marek; Collas, Philippe; Mann, Matthias; Hake, Sandra B..
H3.Y discriminates between HIRA and DAXX chaperone complexes and reveals unexpected insights into human DAXX-H3.3-H4 binding and deposition requirements. Nucleic Acids Research 2017 ;Volume 45.(10) p. 5691-5706
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26 Buemo, Carla; Gambini, Andres; Moro, Lucia Natalia; Hiriart, Maria Ines; Fernandez-Martin, Rafael; Collas, Philippe; Salamone, Daniel Felipe.
Embryo aggregation in pig improves cloning efficiency and embryo quality. PLOS ONE 2016 ;Volume 11.(2)
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27 Collas, Philippe; Oldenburg, Anja.
Mapping Nuclear Lamin-Genome Interactions by Chromatin Immunoprecipitation of Nuclear Lamins. Methods in molecular biology 2016 p. 315-324
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28 Legartová, Soña; Sehnalová, Petra; Malyšková, Barbora; Küntziger, Thomas M.; Collas, Philippe; Cmarko, Dušan; Raška, Ivan; Sorokin, Dmitry; Kozubek, Stanislav; Bártová, Eva.
Localized Movement and Levels of 53BP1 Protein Are Changed by g-irradiation in PML Deficient Cells. Journal of Cellular Biochemistry 2016 ;Volume 117.(11) p. 2583-2596
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29 Lindstad, Torstein; Qu, Su; Sikkeland, Jørgen; Jin, Yang; Kristian, Alexandr; Mælandsmo, Gunhild; Collas, Philippe; Saatcioglu, Fahri.
STAMP2 is required for human adipose-derived stem cell differentiation and adiposite-facilitated prostrate cancer grown in vivo.. OncoTarget 2016 ;Volume 8.(54) p. 91817-91827
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30 Marstad, Anne; Landsverk, Ole J. B.; Strømme, Olaf; Otterlei, Marit; Collas, Philippe; Sundan, Anders; Brede, Gaute.
A-kinase anchoring protein AKAP95 is a novel regulator of ribosomal RNA synthesis. The FEBS Journal 2016 ;Volume 283.(4) p. 757-770
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31 Sekelja, Monika; Paulsen, Jonas; Collas, Philippe.
4D nucleomes in single cells: What can computational modeling reveal about spatial chromatin conformation?. Genome Biology 2016 ;Volume 17:54. p. -
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32 Vanhove, Jolien; Pistoni, Mariaelena; Welters, Marc; Eggermont, Kristel; Vanslembrouck, Veerle; Helsen, Nicky; Boon, Ruben; Najimi, Mustapha; Sokal, Etienne; Collas, Philippe; Voncken, J. Willem; Verfaillie, Catherine M..
H3K27me3 Does Not Orchestrate the Expression of Lineage-Specific Markers in hESC-Derived Hepatocytes In Vitro. Stem Cell Reports 2016 ;Volume 7.(2) p. 192-206
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33 Voon, Hsiao P.J.; Collas, Philippe; Wong, Lee H..
Compromised telomeric heterochromatin promotes ALTernative lengthening of telomeres. Trends in Cancer 2016 ;Volume 2.(3) p. 114-116
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34 Chang, Fiona T.M.; Chan, F. Lyn; McGhie, James D.R.; Udugama, Maheshi; Mayne, Lynne; Collas, Philippe; Mann, Jeffrey R.; Wong, Lee H..
CHK1-driven histone H3.3 serine 31 phosphorylation is important for chromatin maintenance and cell survival in human ALT cancer cells. Nucleic Acids Research 2015 ;Volume 43.(5) p. 2603-2614
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35 Lopez Soop, Graciela; Reiner, Andrew Henry; Thiede, Bernd; Collas, Philippe; Küntziger, Thomas Michel.
Regulation of Normal Mitotic Progression by A-kinase Anchoring Protein 95 (AKAP95). International Symposium on Chromatin Structure, Dynamics, and Function; 2015-08-23 - 2015-08-26
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36 Lund, Eivind Gard; Collas, Philippe; Delbarre, Erwan.
Transcription outcome of promoters enriched in histone variant h3.3 defined by positioning of H3.3 and local chromatin marks. Biochemical and Biophysical Research Communications - BBRC 2015 ;Volume 460.(2) p. 345-353
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37 Lund, Eivind Gard; Duband-Goulet, Isabelle; Oldenburg, Anja; Buendia, Brigitte; Collas, Philippe.
Distinct features of lamin A-interacting chromatin domains mapped by Chip-sequencing from sonicated or micrococcal nuclease-digested chromatin. Nucleus 2015 ;Volume 6.(1) p. 30-39
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38 Paulsen, Jonas; Gramstad, Odin; Collas, Philippe.
Manifold Based Optimization for Single-Cell 3D Genome Reconstruction. PLoS Computational Biology 2015 ;Volume 11.(8)
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39 Reppe, Sjur; Noer, Agate; Grimholt, Runa Marie; Halldorsson, Bjarni V; Medina-Gomez, Carolina; Gautvik, Vigdis Teig; Olstad, Ole Kristoffer; Datta, Harish K; Berg, Jens Petter; Estrada, Karol; Hofman, Albert; Uitterlinden, André G.; Rivadeneira, Fernando; Lyle, Robert; Collas, Philippe; Gautvik, Kaare M.
Methylation of bone SOST, its mRNA, and serum sclerostin levels correlate strongly with fracture risk in postmenopausal women. Journal of Bone and Mineral Research 2015 ;Volume 30.(2) p. 249-256
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40 Rønningen, Torunn; Shah, Akshay; Oldenburg, Anja; Vekterud, Kristin; Delbarre, Erwan; Moskaug, Jan Øivind; Collas, Philippe.
Prepatterning of differentiation-driven nuclear lamin A/C-associated chromatin domains by GlcNAcylated histone H2B. Genome Research 2015 ;Volume 25.(12) p. 1825-1835
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41 Rønningen, Torunn; Shah, Akshay; Reiner, Andrew Henry; Collas, Philippe; Moskaug, Jan Øivind.
Epigenetic priming of inflammatory response genes by high glucose in adipose progenitor cells. Biochemical and Biophysical Research Communications - BBRC 2015 ;Volume 467.(4) p. 979-986
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42 Taghdouini, Adil El; Sørensen, Anita Løvstad; Reiner, Andrew Henry; Coll, Mar; Verhulst, Stefaan; Mannaerts, Inge; Øie, Cristina Ionica; Smedsrød, Bård; Najimi, Mustapha; Sokal, Etienne; Luttun, Aernout; Sancho-Bru, Pau; Collas, Philippe; Grunsven, Leo A van.
Genome-wide analysis of DNA methylation and gene Expression patterns in purified, uncultures human liver cells and activated hepatic stellate cells. OncoTarget 2015 ;Volume 6.(29) p. 26729-26745
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43 Udugama, Maheshi; Chang, Fiona T.M.; Chan, F. Lyn; Tang, Michelle C.; Pickett, Hilda A.; McGhie, James D.R.; Mayne, Lynne; Collas, Philippe; Mann, Jeffrey R.; Wong, Lee H..
Histone variant H3.3 provides the heterochromatic H3 lysine 9 tri-methylation mark at telomeres. Nucleic Acids Research 2015 ;Volume 43.(21) p. 10227-10237
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44 Aanes, Håvard; Winata, Cecilia L.; Moen, Lars Fredrik; Østrup, Olga; Mathavan, Sinnakaruppan; Collas, Philippe; Rognes, Torbjørn; Alestrøm, Peter.
Normalization of RNA-Sequencing Data from Samples with Varying mRNA Levels. PLOS ONE 2014 ;Volume 9.(2)
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45 Carriere, Audrey; Jeanson, Yannick; Berger-Muller, Sandra; André, Mireille; Chenouard, Vanessa; Arnaud, Emmanuelle; Barreau, Corinne; Walther, Romy; Galinier, Anne; Wdziekonski, Brigitte; Villageois, Phi; Louche, Katie; Collas, Philippe; Moro, Cédric; Dani, Christian; Villarroya, Francesc; Casteilla, Louis.
Browning of white adipose cells by Intermediate metabolites: an adaptive mechanism to alleviate redox pressure. Diabetes 2014 ;Volume 63.(10) p. 3253-3265
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46 Collas, Philippe; Lund, Eivind Gard; Ruppelt, Anja.
Closing the (nuclear) envelope on the genome: How nuclear lamins interact with promoters and modulate gene expression. Bioessays 2014 ;Volume 36.(1) p. 75-83
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47 El Taghdouini, A.; Sørensen, A. L.; Coll, M.; Mannaerts, I.; Øie, Cristina Ionica; Fretland, Å. A.; Røsok, B. I.; Najimi, M.; Sokal, E.; Luttun, Aernout; Smedsrød, Bård; Sancho-Bru, P.; Collas, Philippe; van Grunsven, L. A..
P605 gene expression and dna methylation profiling of distinct adult human liver cells and culture-activated hepatic stellate cells. Journal of Hepatology 2014 ;Volume 60.(1) p. 271-271
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48 Ivanauskiene, Kristina; Delbarre, Erwan; McGhie, James; Küntziger, Thomas Michel; Wong, Lee-Jun C.; Collas, Philippe.
The PML-associated protein DEK regulates the balance of H3.3 loading on chromatin and is important for telomere integrity. Genome Research 2014 ;Volume 24.(10) p. 1584-1594
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49 Lund, Eivind Gard; Ruppelt, Anja; Collas, Philippe.
Enriched domain detector: A program for detection of wide genomic enrichment domains robust against local variations. Nucleic Acids Research 2014 ;Volume 42.(11) p. e92-
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50 Oldenburg Ruppelt, Anja; Delbarre, Erwan; Thiede, Bernd; Vigouroux, Corinne; Collas, Philippe.
Deregulation of Fragile X-related protein 1 by the lipodystrophic lamin A p.R482W mutation elicits a myogenic gene expression program in preadipocytes. Human Molecular Genetics 2014 ;Volume 23.(5) p. 1151-1162
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