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Etternavn: Pope   Fornavn: Phil   Fra: 1900   Rapporteringsår   Alle publ. kanaler

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1 Strand, Marius Andre; Yang, Jingjing; Sandve, Simen Rød; Pope, Phillip; Hvidsten, Torgeir Rhoden.
Transkingdom network analysis provides insight into host-microbiome interactions in Atlantic salmon. Computational and Structural Biotechnology Journal 2021 ;Volum 19. s. 1028-1034
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2 Andersen, Thea Os; Kunath, Benoit Josef; Hagen, Live Heldal; Arntzen, Magnus Øverlie; Pope, Phillip Byron.
Rumen metaproteomics: Closer to linking rumen microbial function to animal productivity traits. Methods 2020 ;Volum 186. s. 42-51
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3 Delogu, Francesco; Kunath, Benoit Josef; Evans, PN; Arntzen, Magnus Øverlie; Hvidsten, Torgeir Rhoden; Pope, Phillip Byron.
Integration of absolute multi-omics reveals dynamic protein-to-RNA ratios and metabolic interplay within mixed-domain microbiomes. Nature Communications 2020 s. -
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4 Gilbert, Rosalind A.; Townsend, Eleanor M.; Crew, Kathleen S.; Hitch, Thomas C.A.; Friedersdorff, Jessica C.A.; Creevey, Christopher J.; Pope, Phillip Byron; Ouwerkerk, Diane; Jameson, Eleanor.
Rumen virus populations: Technological advances enhancing current understanding. Frontiers in Microbiology 2020 ;Volum 11:450. s. 1-26
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5 Hagen, Live Heldal; Brooke, Charles G.; Shaw, Claire A.; Norbeck, Angela D.; Piao, Hailan; Arntzen, Magnus Øverlie; Olson, Heather M.; Copeland, Alex; Isern, Nancy; Shukla, Anil; Roux, Simon; Lombard, Vincent; Henrissat, Bernard; O’Malley, Michelle A.; Grigoriev, Igor V.; Tringe, Susannah G.; Mackie, Roderick I; Pasa-Tolic, Ljiljana; Pope, Phillip Byron; Hess, Matthias.
Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber. The ISME Journal 2020 s. -
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6 Kujawska, Magdalena; Leanti La Rosa, Sabina; Roger, Laure C.; Pope, Phillip Byron; Hoyles, Lesley; McCartney, Anne L.; Hall, Lindsay J..
Succession of Bifidobacterium longum Strains in Response to a Changing Early Life Nutritional Environment Reveals Dietary Substrate Adaptations. iScience 2020 ;Volum 23.(8) s. -
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7 Mazurkewich, Scott; Helland, Ronny; Mackenzie, Alasdair; Eijsink, Vincent; Pope, Phillip Byron; Brändén, Gisela; Larsbrink, Johan.
Structural insights of the enzymes from the chitin utilization locus of Flavobacterium johnsoniae. Scientific Reports 2020 s. -
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8 Michalak, Leszek; Gaby, John Christian; Lagos, Leidy; Leanti La Rosa, Sabina; Hvidsten, Torgeir Rhoden; Tetard-Jones, Catherine; Willats, William G.T.; Terrapon, Nicolas; Lombard, Vincent; Henrissat, Bernard; Dröge, Johannes; Arntzen, Magnus Øverlie; Hagen, Live Heldal; Øverland, Margareth; Pope, Phillip Byron; Westereng, Bjørge.
Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut. Nature Communications 2020 ;Volum 11. s. -
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9 Naas, Adrian Ertsås; Pope, Phillip Byron.
Ruminal fibre digestion. I: Improving rumen function. Burleigh Dodds Science Publishing Limited 2020 ISBN 9781786763327. s. -
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10 Nayfach, S; Roux, S; Seshadri, R; Udwary, D; Varghese, Neha; Schulz, F; Pope, Phillip Byron.
A Genomic Catalogue of Earth’s Microbiomes. Nature Biotechnology 2020
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11 Shaffer, Michael; Borton, Mikayla A.; McGivern, Bridget B.; Zayed, Ahmed A.; Leanti La Rosa, Sabina; Solden, Lindsey M; Liu, Pengfei; Narrowe, Adrienne B.; Rodríguez-Ramos, Josué; Bolduc, Benjamin; Gazitúa, M. Consuelo; Daly, Rebecca A.; Smith, Garrett J.; Vik, Dean R.; Pope, Phillip Byron; Sullivan, Matthew B; Roux, Simon; Wrighton, Kelly C..
DRAM for distilling microbial metabolism to automate the curation of microbiome function. Nucleic Acids Research (NAR) 2020 ;Volum 48.(16) s. 8883-8900
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12 Kunath, Benoit Josef; Minniti, Giusi; Skaugen, Morten; Hagen, Live Heldal; Vaaje-Kolstad, Gustav; Eijsink, Vincent; Pope, Phillip; Arntzen, Magnus Øverlie.
Metaproteomics: Sample Preparation and Methodological Considerations. I: Emerging Sample Treatments in Proteomics. Springer Nature 2019 ISBN 978-3-030-12297-3. s. 187-215
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13 Leanti La Rosa, Sabina; Kachrimanidou, Vasiliki; Buffetto, Fanny; Pope, Phillip; Pudlo, Nicholas; Martens, Eric C.; Rastall, Robert; Gibson, Glenn; Westereng, Bjørge.
Wood-derived Dietary Fibers Promote Beneficial Human Gut Microbiota. mSphere 2019 ;Volum 4.(1) s. 1-16
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14 Leanti La Rosa, Sabina; Leth, Maria Louise; Michalak, Leszek; Hansen, Morten Ejby; Pudlo, Nicholas; Glowacki, Robert; Pereira, Gabriel; Workman, Christopher; Arntzen, Magnus Øverlie; Pope, Phillip; Martens, Eric C.; Hachem, Maher Abou; Westereng, Bjørge.
The human gut Firmicute Roseburia intestinalis is a primary degrader of dietary β-mannans. Nature Communications 2019 ;Volum 10.
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15 Liu, N.; Li, H; Chevrette, MG; Zhang, L; Cao, L.; Zhou, H; Zhou, X; Zhou, Z; Pope, Phillip; Currie, CR; Huang, Y; Wang, Q.
Functional metagenomics reveals abundant polysaccharide-degrading gene clusters and cellobiose utilization pathways within gut microbiota of a wood-feeding higher termite. The ISME Journal 2019 ;Volum 13. s. 104-117
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16 Minniti, Giusi; Sandve, Simen Rød; Padra, Janos Tamas; Hagen., Live Heldal; Linden, Sara; Pope, Phillip; Arntzen, Magnus Øverlie; Vaaje-Kolstad, Gustav.
The Farmed Atlantic Salmon (Salmo salar) Skin–Mucus Proteome and Its Nutrient Potential for the Resident Bacterial Community. Genes 2019 ;Volum 10.(7) s. 1-21
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17 Salgado Flores, Alejandro; Tveit, Alexander Tøsdal; Wright, Andre-Denis; Pope, Phillip; Sundset, Monica Alterskjær.
Characterization of the cecum microbiome from wild and captive rock ptarmigans indigenous to Arctic Norway. PLOS ONE 2019 ;Volum 14.(3)
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18 Emerson, J; Roux, Stephanie; Brum, JR; Bolduc, B; Woodcroft, BJ; Jang, HB; Singleton, CM; Solden, LM; Naas, Adrian Ertsås; Boyd, JA; Hodgkins, SB; Wilson, RM; Trubl, G; Li, C; Frolking, Steve; Pope, Phillip; Wrighton, KC; Crill, PM; Chanton, JP; Saleska, SR; Tyson, GW; Rich, VI; Sullivan, MB.
Host-linked soil viral ecology along a permafrost thaw gradient. Nature Microbiology 2018 ;Volum 3.(8) s. 870-880
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19 Jensen, Marianne Slang; Fredriksen, Lasse; Mackenzie, Alasdair; Pope, Phillip; Leiros, Ingar; Chylenski, Piotr; Williamson, Adele Kim; Christopeit, Tony; Østby, Heidi; Vaaje-Kolstad, Gustav; Eijsink, Vincent.
Discovery and characterization of a thermostable two-domain GH6 endoglucanase from a compost metagenome. PLOS ONE 2018 ;Volum 13.(5)
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20 Kunath, Benoit Josef; Delogu, Francesco; Naas, Adrian Ertsås; Arntzen, Magnus Øverlie; Eijsink, Vincent; Henrissat, Bernard; Hvidsten, Torgeir Rhoden; Pope, Phillip.
From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus. The ISME Journal 2018
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21 Naas, Adrian Ertsås; Solden, Lindsey M.; Norbeck, Angela D.; Brewer, Heather M.; Hagen, Live Heldal; Heggenes, Ingrid Marie Høymyr; McHardy, Alice Carolyn; Mackie, Roderick Ian; Pasǎ-Tolić, Liljana J.; Arntzen, Magnus Øverlie; Eijsink, Vincent; Koropatkin, Nicole M.; Hess, Matthias; Wrighton, Kelly C.; Pope, Phillip.
"Candidatus Paraporphyromonas polyenzymogenes" encodes multi-modular cellulases linked to the type IX secretion system. Microbiome 2018 ;Volum 6:44. s. 1-13
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22 Rudi, Knut; Angell, Inga Leena; Pope, Phillip; Vik, Jon Olav; Sandve, Simen Rød; Snipen, Lars-Gustav.
A stable core gut microbiota across fresh- to saltwater transition for farmed Atlantic salmon. Applied and Environmental Microbiology 2018 ;Volum 84.(2)
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23 Solden, LM; Naas, Adrian Ertsås; Roux, S; Daly, R.A.; Collins, W.B.; Nicora, C.D.; Purvine, S.O.; Hoyt, D.W.; Schückel, J; Jørgensen, B.; Willats, W; Spalinger, DE; Firkins, J; Lipton, M.S.; Sullivan, M; Pope, Phillip; Wrighton, KC.
Interspecies cross-feeding orchestrates carbon degradation in the rumen ecosystem. Nature Microbiology 2018 ;Volum 3.(11) s. 1274-1284
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24 Taillefer, Marcel; Arntzen, Magnus Øverlie; Henrissat, Bernard; Pope, Phillip; Larsbrink, Johan.
Proteomic Dissection of the Cellulolytic Machineries Used by Soil-Dwelling Bacteroidetes. mSystems 2018 ;Volum 3.(6)
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25 Arntzen, Magnus Øverlie; Varnai, Aniko; Mackie, RI; Eijsink, Vincentius Gerardus Henricus; Pope, Phillip.
Outer membrane vesicles from Fibrobacter succinogenes S85 contain an array of Carbohydrate-Active Enzymes with versatile polysaccharide-degrading capacity. Environmental Microbiology 2017 ;Volum 19.(7) s. 2701-2714
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26 Hagen, Live Heldal; Frank, Jeremy; Zamanzadeh, Mirzaman; Eijsink, Vincentius Gerardus Henricus; Pope, Phillip; Horn, Svein Jarle; Arntzen, Magnus Øverlie.
Quantitative metaproteomics highlight the metabolic contributions of uncultured phylotypes in a thermophilic anaerobic digester. Applied and Environmental Microbiology 2017 ;Volum 83.(2) s. -
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27 Kunath, Benoit Josef; Bremges, Andreas; Weimann, Aaron; McHardy, Alice C.; Pope, Phillip.
Metagenomics and CAZyme Discovery. Methods in molecular biology 2017 ;Volum 1588. s. 255-277
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28 Larsbrink, Johan; Tuveng, Tina Rise; Pope, Phillip; Bulone, V.; Eijsink, Vincentius Gerardus Henricus; Brumer, H; McKee, LS.
Proteomic data on enzyme secretion and activity in the bacterium Chitinophaga pinensis. Data in Brief 2017 ;Volum 11. s. 484-490
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29 Larsbrink, Johan; Tuveng, Tina Rise; Pope, Phillip; Bulone, Vincent; Eijsink, Vincentius Gerardus Henricus; Brumer, Harry; McKee, Lauren.
Proteomic insights into mannan degradation and protein secretion by the forest floor bacterium Chitinophaga pinensis. Journal of Proteomics 2017 ;Volum 156. s. 63-74
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30 Minniti, Giusi; Hagen, Live Heldal; Porcellato, Davide; Jørgensen, Sven Martin; Pope, Phillip; Vaaje-Kolstad, Gustav.
The Skin-Mucus Microbial Community of Farmed Atlantic Salmon (Salmo salar). Frontiers in Microbiology 2017 ;Volum 8. s. -
31 Frank, Jeremy A.; Pan, Yao; Tooming-Klunderud, Ave; Eijsink, Vincent; McHardy, Alice C; Nederbragt, Alexander Johan; Pope, Phillip.
Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. Scientific Reports 2016 ;Volum 6. s. -
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32 Frank, Jeremy; Arntzen, Magnus Øverlie; Sun, L; Hagen, Live Heldal; McHardy, AC; Horn, Svein Jarle; Eijsink, Vincent; Schnürer, Anna; Pope, Phillip.
Novel syntrophic populations dominate an ammonia-tolerant methanogenic microbiome;. mSystems 2016 ;Volum 1.(5) s. 1-13
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33 Larsbrink, Johan; Zhu, Yongtao; Kharada, Sampada S.; Kwiatkowski, Kurt J.; Eijsink, Vincentius Gerardus Henricus; Koropatkin, Nicole M.; McBride, Mark J.; Pope, Phillip.
A Polysaccharide Utilization Locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin. Biotechnology for Biofuels 2016 ;Volum 9.(260) s. 1-16
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34 Paez-Espino, D; Chen, IA; Palaniappan, K; Ratner, A.; Chu, K; Szeto, E; Pillay, M; Huang, J; Markowitz, VM; Nielsen, T.; Huntemann, M; Reddy, TBK; Georgios, PA; Sullivan, MB; Campbell, BJ; Chen, F; McMahon, K.; Hallam, SJ; Denef, V; Cavicchhioli, R; Caffrey, SM; Streit, WR; Webster, J; Handley, KM; Salekdeh, GH; Tsesmetzis, N; Setubal, JC; Pope, Phillip; Liu, WT; Rivers, AR; Ivanova, NN; Kyrpides, NC.
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Research (NAR) 2016 ;Volum 45.(D1) s. D457-D465
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35 Salgado, Alejandro Flores; Bockwoldt, Mathias; Hagen, Live Heldal; Pope, Phillip; Sundset, Monica Alterskjær.
A first insight into the fecal microbiota of the high Arctic muskoxen (Ovibos moschatus). Microbial Genomics 2016
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36 Salgado, Alejandro Flores; Hagen, Live Heldal; Ishaq, Suzanne L.; Zamanzadeh, Mirzaman; Wright, Andre-Denis G.; Pope, Phillip; Sundset, Monica Alterskjær.
Rumen and Cecum Microbiomes in Reindeer (Rangifer tarandus tarandus) Are Changed in Response to a Lichen Diet and May Affect Enteric Methane Emissions. PLOS ONE 2016 ;Volum 11.(5)
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37 Umu, Özgün Candan Onarman; Bauerl, Christine; Oostindjer, Marije; Pope, Phillip; Hernandez, Pablo E.; Perez-Martinez, Gaspar; Diep, Dzung Bao.
The potential of class II bacteriocins to modify gut microbiota to improve host health. PLOS ONE 2016 ;Volum 11.(10)
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38 Weimann, Aaron; Mooren, Kyra; Frank, Jeremy; Pope, Phillip; Bremges, Andreas; McHardy, Alice C.
From genomes to phenotypes: Traitar, the microbial trait analyzer. mSystems 2016
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39 Hagen, Live Heldal; Vivekanand, Vivekanand; Pope, Phillip; Eijsink, Vincent; Horn, Svein Jarle.
The effect of storage conditions on microbial community composition and biomethane potential in a biogas starter culture. Applied Microbiology and Biotechnology 2015 ;Volum 99.(13) s. 5749-5761
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40 Henderson, Gemma; Cox, Faith; Ganesh, Siva; Jonker, Arjan; Young, Wayne; Janssen, Peter H.; Pope, Phillip.
Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range. Scientific Reports 2015 ;Volum 5:14567.
41 Mackenzie, Alasdair; Naas, Adrian Ertsås; Kracun, S; Schückel, J; Fangel, J; Agger, Jane; Willats, WGT; Eijsink, Vincent; Pope, Phil.
A polysaccharide utilization locus from an uncultured Bacteroidetes phylotype suggests ecological adaptation and substrate versatility. Applied and Environmental Microbiology 2015 ;Volum 81.(1) s. 187-195
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42 Naas, Adrian Ertsås; Mackenzie, Alasdair; Dalhus, Bjørn; Eijsink, Vincent; Pope, Phillip.
Structural features of a Bacteroidetes-affiliated cellulase linked with a polysaccharide utilization locus. Scientific Reports 2015 ;Volum 5. s. -
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43 Sun, Li; Pope, Phillip; Eijsink, Vincent; Schnürer, Anna.
Characterisation of microbial community structure during continuous digestion of straw and cow. Microbial Biotechnology 2015 ;Volum 8.(5) s. 815-827
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44 Umu, Özgün Candan Onarman; Frank, Jeremy; Fangel, Jonatan U.; Oostindjer, Marije; Da Silva, C; Bolhuis, J. Elizabeth; Bosch, Guido; Willats, William G.T.; Pope, Phillip; Diep, Dzung Bao.
Resistant starch diet induces change in the swine microbiome and a predominance of beneficial bacterial populations.. Microbiome 2015 ;Volum 3:16.
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45 Avershina, Ekaterina; Storrø, Ola; Øien, Torbjørn; Johnsen, Roar; Pope, Phil; Rudi, Knut.
Major faecal microbiota shifts in composition and diversity with age in a geographically restricted cohort of mothers and their children. FEMS Microbiology Ecology 2014 ;Volum 87.(1) s. 280-290
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46 Hagen, Live Heldal; Vivekanand, Vivekanand; Linjordet, Roar; Pope, Phil; Eijsink, Vincent; Horn, Svein Jarle.
Microbial community structure and dynamics during co-digestion of whey permeate and cow manure in continuous stirred tank reactor systems. Bioresource Technology 2014 ;Volum 171. s. 350-359
47 Konietzny, Sebastian G.A.; Pope, Phil; Weimann, Aaron; McHardy, Alice C..
Inference of phenotype-defining functional modules of protein families for microbial plant biomass degraders. Biotechnology for Biofuels 2014 ;Volum 7.
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48 Naas, Adrian Ertsås; Mackenzie, Alasdair; Mravec, J; Schückel, J; Willats, WGT; Eijsink, Vincent; Pope, Phil.
Do Rumen Bacteroidetes utilize an alternative mechanism for cellulose degradation?. mBio 2014 ;Volum 5.(4) s. -
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49 Rosewarne, Carly P.; Pope, Phil; Cheung, Jane L.; Morrison, Mark.
Analysis of the bovine rumen microbiome reveals a diversity of Sus-like polysaccharide utilization loci from the bacterial phylum Bacteroidetes. Journal of Industrial Microbiology & Biotechnology 2014 ;Volum 41.(3) s. 601-606
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50 Sundset, Monica Alterskjær; Salgado, Alejandro Flores; Wright, Andre-Denis G.; Pope, Phillip.
The Reindeer Rumen Microbiome. I: Encyclopedia of Metagenomics. Springer 2014 ISBN 978-1-4614-6418-1. s. 1-12
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