Cristin

2019
1.	Schubert, Marian; Grønvold, Lars; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden; Fjellheim, Siri. Evolution of cold acclimation and its role in niche transition in the temperate grass subfamily Pooideae. Plant Physiology 2019 NMBU Untitled
2018
2.	Felten, Judith; Vahala, Jorma; Love, Jonathan; Gorzsás, András; Rüggeberg, Markus; Delhomme, Nicolas; Leśniewska, Joanna; Kangasjarvi, Jaakko; Hvidsten, Torgeir Rhoden; Mellerowicz, Ewa; Sundberg, Björn. Ethylene signaling induces gelatinous layers with typical features of tension wood in hybrid aspen. New Phytologist 2018 ;Volum 218.(3) s. 999-1014 NMBU Untitled

3.	Gillard, Gareth Benjamin; Harvey, Thomas Nelson; Gjuvsland, Arne Bjørke; Jin, Yang; Thomassen, Magny Sissel S.; Lien, Sigbjørn; Leaver, Michael; Torgersen, Jacob Seilø; Hvidsten, Torgeir Rhoden; Vik, Jon Olav; Sandve, Simen Rød. Life-stage associated remodeling of lipid metabolism regulation in Atlantic salmon. Molecular Ecology 2018 ;Volum 27.(5) s. 1200-1213 NTNU NMBU Untitled

4.	Kunath, Benoit Josef; Delogu, Francesco; Naas, Adrian Ertsås; Arntzen, Magnus Øverlie; Eijsink, Vincent; Henrissat, Bernard; Hvidsten, Torgeir Rhoden; Pope, Phillip. From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus. The ISME Journal 2018 NMBU Untitled

5.	Kunath, Benoit Josef; Delogu, Francesco; Naas, Adrian Ertsås; Arntzen, Magnus Øverlie; Eijsink, Vincent; Hvidsten, Torgeir Rhoden; Pope, Phillip. From proteins to polysaccharides; adaptations of heterogeneous strains and interactions for biomass co-degradation. 17th International Symposium on Microbial Ecology (ISME17); 2018-08-12 - 2018-08-17 NMBU Untitled

6.	Lin, YC; Wang, Jing; Delhomme, Nicolas; Schiffthaler, Bastian; Sundström, Görel; Zuccolo, Andrea; Nystedt, Björn; Hvidsten, Torgeir Rhoden; de la Torre, Amanda; Cossu, Rosa M.; Hoeppner, Marc P.; Lantz, Henrik; Scofield, Douglas G.; Zamani, Neda; Johansson, Anna; Mannapperuma, Chanaka; Robinson, Kathryn M; Mähler, Niklas; Leitch, Ilia J.; Pellicer, Jaume; Park, Eung-Jun; Van Montagu, Marc; Van de Peer, Yves; Grabherr, Manfred G.; Jansson, Stefan; Ingvarsson, Pär K.; Street, Nathaniel R.. Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen. Proceedings of the National Academy of Sciences of the United States of America 2018 ;Volum 115.(46) s. E10970-E10978 NMBU Untitled

7.	Obudulu, Ogonna; Mähler, Niklas; Skotare, Tomas; Bygdell, Joakim; Abreu, Ilka N.; Ahnlund, Maria; Gandla, Madhavi Latha; Petterle, Anna; Moritz, Thomas; Hvidsten, Torgeir Rhoden; Jönsson, Leif J.; Wingsle, Gunnar; Trygg, Johan; Tuominen, Hannele. A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees. BMC Genomics 2018 ;Volum 19.(11) NMBU Untitled

8.	Sandve, Simen Rød; Rohlfs, Rori V; Hvidsten, Torgeir Rhoden. Subfunctionalization versus neofunctionalization after whole-genome duplication. Nature Genetics 2018 ;Volum 50.(7) s. 908-909 NMBU Untitled

9.	Schubert, Marian; Sandve, Simen Rød; Grønvold, Lars; Hvidsten, Torgeir Rhoden; Fjellheim, Siri. Molecular evolution of cold acclimation in temperate grasses (Pooideae). Evolutionary Systems Biology; 2018-04-11 - 2018-04-13 NMBU Untitled

10.	Tylewicz, S.; Petterle, Anna; Marttila, S; Miskolczi, P; Azeez, A; Singh, R. K.; Immanen, Juha; Mähler, Niklas; Hvidsten, Torgeir Rhoden; Eklund, D. M.; Bowman, J. L.; Helariutta, Y.; Bhalerao, Rishikesh. Photoperiodic control of seasonal growth is mediated by ABA acting on cell-cell communication. Science 2018 ;Volum 360.(6385) s. 212-215 NMBU Untitled

11.	Varadharajan, Srinidhi; Sandve, Simen Rød; Gillard, Gareth Benjamin; Tørresen, Ole K.; Mulugeta, Teshome Dagne; Hvidsten, Torgeir Rhoden; Lien, Sigbjørn; Vøllestad, Leif Asbjørn; Jentoft, Sissel; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd. The grayling genome reveals selection on gene expression regulation after whole-genome duplication. Genome Biology and Evolution 2018 ;Volum 10.(10) s. 2785-2800 UiO NMBU Untitled
2017
12.	Demko, Viktor; Belova, Tatiana; Hvidsten, Torgeir Rhoden; Perroud, Pierre-Francois; Johansen, Wenche; Olsen, Odd-Arne. Using transcriptomics to link Calpain-controlled development to gene expression networks.. th Norwegian Plant Biology Conference, June 21-22 2017; 2017-06-21 - 2017-06-22 HINN NMBU Untitled

13.	Harvey, Thomas N; Torgersen, Jacob Seilø; Vik, Jon Olav; Hvidsten, Torgeir Rhoden; Gillard, Gareth Benjamin; Sandve, Simen Rød. Precision cut liver slice culture as a platform for studying lipid metabolism in Atlantic salmon. Norwegian Biochemical Society (NBS) annual meeting; 2017-01-19 - 2017-01-22 UiO NMBU Untitled

14.	Hvidsten, Torgeir Rhoden. Gene co-expression network connectivity is an important determinant of selective constraint. Evolution, June 23-27; 2017-07-23 - 2017-07-27 NMBU Untitled

15.	Hvidsten, Torgeir Rhoden. Regulatory evolution after whole genome duplication. Third annual conference of NORBIS; 2017-11-08 - 2017-11-10 NMBU Untitled

16.	Hvidsten, Torgeir Rhoden. The transcriptome of wood formation. 50 Years Plant Science in Umeå Symposium; 2017-08-21 - 2017-08-23 NMBU Untitled

17.	Jokipii-Lukkari, Sile; Sundell, David; Nilsson, Ove; Hvidsten, Torgeir Rhoden; Street, Nathaniel R.; Tuominen, Hannele. NorWood: A gene expression resource for evo-devo studies of conifer wood development. New Phytologist 2017 ;Volum 216.(2) s. 482-494 NMBU Untitled

18.	Mähler, Niklas; Wang, Jing; Terebieniec, B; Ingvarsson, Pär K.; Street, Nathaniel R.; Hvidsten, Torgeir Rhoden. Gene co-expression network connectivity is an important determinant of selective constraint. PLoS Genetics 2017 ;Volum 13.(4) NMBU Untitled

19.	Robertson, Fiona M; Gundappa, Manu Kumar; Grammes, Fabian; Hvidsten, Torgeir Rhoden; Redmond, Anthony K; Lien, Sigbjørn; Martin, Samuel AM; Holland, Peter WH; Sandve, Simen Rød; Macqueen, Daniel J. Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification. Genome Biology 2017 ;Volum 18. s. - NMBU Untitled

20.	Sandve, Simen Rød; Hvidsten, Torgeir Rhoden; Lien, Sigbjørn; Rori, Rohlfs; Jakobsen, Kjetill Sigurd; Nome, Torfinn; Varadharajan, Srinidhi; Nederbragt, Alexander Johan; Vøllestad, Leif Asbjørn. Evolution after whole genome duplication - insights from the salmonids. Evolution Conference; 2017-06-22 UiO NMBU Untitled

21.	Sandve, Simen Rød; Nicola, Barson; Hvidsten, Torgeir Rhoden. Hvorfor har vi sex?. Aftenposten Viten 2017 NMBU Untitled

22.	Schubert, Marian; Grønvold, Lars; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden; Fjellheim, Siri. Molecular evolution of cold response in temperate grasses (Pooideae). Evolution 2017; 2017-07-23 - 2017-07-27 NMBU Untitled

23.	Sundell, David; Street, Nathaniel R.; Kumar, Manoj; Mellerowicz, Ewa; Kucukoglu, Melis; Johnsson, Christoffer; Kumar, Vikash; Mannapperuma, Chanaka; Delhomme, Nicolas; Nilsson, Ove; Tuominen, Hannele; Pesquet, Edouard; Fischer, Urs; Niittylä, Totte; Sundberg, Björn; Hvidsten, Torgeir Rhoden. AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula. The Plant Cell 2017 ;Volum 29.(7) s. 1585-1604 NMBU Untitled
2016
24.	Gillard, Gareth; Harvey, Thomas N; Vik, Jon Olav; Gjuvsland, Arne Bjørke; Lien, Sigbjørn; Hvidsten, Torgeir Rhoden; Sandve, Simen Rød. Metabolic responses in Atlantic salmon omega-3 pathways after dietary switches between fish and vegetable oils. International Conference on Integrative Salmonid Biology (ICISB) 2016; 2016-04-24 - 2016-04-27 NMBU Untitled

25.	Gillard, Gareth; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden. Salmonid gene expression evolution after whole genome duplication. Bay Area Population Genomics Meeting XIV; 2016-09-17 - 2016-09-17 NMBU Untitled

26.	Hermansen, Russell A.; Hvidsten, Torgeir Rhoden; Sandve, Simen Rød; Liberles, David A.. Extracting functional trends from whole genome duplication events using comparative genomics. Biological Procedures Online 2016 ;Volum 18:11. s. - NMBU Untitled

27.	Hvidsten, Torgeir Rhoden. Computational methods for studying the evolution of gene regulation. PhD/Post Doc workshop at Klækken; 2016-09-09 - 2016-09-10 NMBU Untitled

28.	; Hånes, Katrine. Optimizing Transcriptome Analysis using Short-Read RNA-Seq in Atlantic Salmon. Ås: Norges miljø- og biovitenskapelige universitet 2016 29 s. NOFIMA NMBU Untitled

29.	Ingvarsson, Pär K.; Hvidsten, Torgeir Rhoden; Street, Nathaniel R.. Towards integration of population and comparative genomics in forest trees. New Phytologist 2016 ;Volum 212.(2) s. 338-344 NMBU Untitled

30.	Lien, Sigbjørn; Koop, Ben F; Sandve, Simen Rød; Miller, Jason R.; Kent, Matthew Peter; Nome, Torfinn; Hvidsten, Torgeir Rhoden; Leong, Jong; Minkley, David R.; Zimin, Aleksey; Grammes, Fabian; Grove, Harald; Gjuvsland, Arne Bjørke; Walenz, Brian; Hermansen, Russell A.; von Schalburg, Kristian R.; Rondeau, Eric; Genova, Alex Di; Antony Samy, Jeevan Karloss; Vik, Jon Olav; Vigeland, Magnus Dehli; Caler, Lis; Grimholt, Unni; Jentoft, Sissel; Våge, Dag Inge; de Jong, Pieter J.; Moen, Thomas; Baranski, Matthew; Palti, Yniv; Smith, Douglas W.; Yorke, James A.; Nederbragt, Alexander J.; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Jiang, Xuanting; Fan, Dingding; Hu, Yan; Liberles, David A.; Vidal, Rodrigo; Iturra, Patricia; Jones, Steven J.M.; Jonassen, Inge; Maass, Alejandro; Omholt, Stig William; Davidson, William S. The Atlantic salmon genome provides insights into rediploidization. Nature 2016 ;Volum 533.(7602) s. 200-205 NOFIMA NTNU OUS UiB UiO NMBU VETINST Untitled

31.	Obudulu, Ogonna; Bygdell, Joakim; Sundberg, Björn; Moritz, Thomas; Hvidsten, Torgeir Rhoden; Trygg, Johan; Wingsle, Gunnar. Quantitative proteomics reveals protein profiles underlying major transitions in aspen wood development. BMC Genomics 2016 ;Volum 17.(119) NMBU Untitled

32.	Schubert, Marian. Evolution of adaptations to temperate climate in the grass subfamily Pooideae. Ås: Norwegian University of Life Sciences 2016 (ISBN 978-82-575-1403-7) 170 s. NMBU Untitled

33.	Sverdrup-Thygeson, Anne; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden. Verdens rareste dyr ble nettopp litt rarere. Aftenposten Viten 2016 NMBU Untitled
2015
34.	Delhomme, Nicolas; Mähler, Niklas; Schiffthaler, Bastian; Sundell, David; Mannapperuma, Chanaka; Hvidsten, Torgeir Rhoden; Street, Nathaniel. EpiGeneSys Protocol. NMBU Untitled

35.	Delhomme, Nicolas; Sundström, Görel; Zamani, Neda; Lantz, Henrik; Lin, Yao-Cheng; Hvidsten, Torgeir Rhoden; Höppner, Marc P.; Jern, Patric; Van de Peer, Yves; Lundeberg, Joakim; Grabherr, Manfred G.; Street, Nathaniel. Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies). PLoS ONE 2015 ;Volum 10:e0139080.(9) NMBU Untitled

36.	Hvidsten, Torgeir Rhoden. Comparative regulomics: computational approaches to reveal the evolution of transcriptional regulation.. Next Generation Sequencing Symposium; 2015-12-10 - 2015-12-11 NMBU Untitled

37.	Hvidsten, Torgeir Rhoden. Seeing the forest for the trees in omics data; examples from aspen and spruce genomics projects. Norwegian Biochemical Society seminar series; 2015-04-09 NMBU Untitled

38.	Mähler, Niklas; Robinson, Kathryn M; Street, Nathaniel; Hvidsten, Torgeir Rhoden. The regulatory landscape of Populus tremula. RegGenSIG at ISMB; 2015-07-10 - 2015-07-14 NMBU Untitled

39.	Sandve, Simen Rød; Hvidsten, Torgeir Rhoden. Hva er likheten mellom en rosinbolle og en laksefilet?. Aftenposten (morgenutg. : trykt utg.) 2015 NMBU Untitled

40.	Sandve, Simen Rød; Hvidsten, Torgeir Rhoden. Om å overleve i en fryser. Aftenposten (morgenutg. : trykt utg.) 2015 NMBU Untitled

41.	Sundell, David; Mannapperuma, Chanaka; Netotea, Sergiu; Delhomme, Nicolas; Lin, Yao-Cheng; Sjödin, Andreas; Van de Peer, Yves; Jansson, Stefan; Hvidsten, Torgeir Rhoden; Street, Nathaniel. The plant genome integrative explorer resource: PlantGenIE.org. New Phytologist 2015 ;Volum 208.(4) s. 1149-1156 NMBU Untitled

42.	Terebieniec, B; Schiffthaler, Bastian; Robinson, Kathryn M; Mähler, Niklas; Delhomme, Nicolas; Hvidsten, Torgeir Rhoden; Street, Nathaniel. Leaf Development Characterisation in European Aspen (Populus tremula). IUFRO Tree Biotechnology Conference. June 8-12, 2015, Florence, Italy; 2015-06-08 - 2015-06-12 NMBU Untitled

43.	Zaborowski, R; Hvidsten, Torgeir Rhoden; Wilczynski, Bartek. Genes co-localization in topologically associating domains indicates higher co-expression. Recomb; 2015-04-12 - 2015-04-15 NMBU Untitled
2014
44.	Delhomme, Nicolas; Mannapperuma, Chanaka; Sundell, David; Mähler, Niklas; Schiffthaler, Bastian; Lin, Yao-Cheng; Felten, Judith; Grabherr, Manfred G.; Van de Peer, Yves; Jansson, Stefan; Sundberg, Björn; Hvidsten, Torgeir Rhoden; Street, Nathaniel. A Cautionary Tale of Using RNAseq Data: Examples from Large-Scale Projects at the Umeå Plant Science Centre. Plant & Animal Genome XXII Conference; 2014-01-11 - 2014-01-15 NMBU Untitled

45.	Hvidsten, Torgeir Rhoden. Comparative Analysis of Gene Regulatory Networks in Plants. Swedish University of Agricultural Sciences; 2014-03-28 - 2014-03-28 NMBU Untitled

46.	Mähler, Niklas; Cheregi, Otilia; Funk, Christiane; Netotea, Sergiu; Hvidsten, Torgeir Rhoden. Synergy: A web resource for exploring gene regulation in Synechocystis sp. PCC6803. PLoS ONE 2014 ;Volum 9.(11) NMBU Untitled

47.	Mähler, Niklas; Netotea, Sergiu; Hvidsten, Torgeir Rhoden. Synergy: A Web Resource for Exploring Gene Expression in Synechocystis sp. PCC6803. Plant & Animal Genome XXII Conference; 2014-01-11 - 2014-01-15 NMBU Untitled

48.	Netotea, Sergiu; Sundell, David; Mähler, Niklas; Delhomme, Nicolas; Street, Nathaniel; Hvidsten, Torgeir Rhoden. Comparative Analysis of Gene Regulatory Networks in Plants. Plant & Animal Genome XXII Conference; 2014-01-11 - 2014-01-15 NMBU Untitled

49.	Netotea, Sergiu; Sundell, David; Street, Nathaniel; Hvidsten, Torgeir Rhoden. ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa. BMC Genomics 2014 ;Volum 15. s. - NMBU Untitled

50.	Pfeifer, Matthias; Kugler, Karl G.; Sandve, Simen Rød; Zhan, Bujie; Rudi, Heidi; Hvidsten, Torgeir Rhoden; Paux, Etienne; Mayer, Klaus; Olsen, Odd-Arne. The Transcriptional Landscape of Bread Wheat. Plant & Animal Genome XXII Conference; 2014-01-11 - 2014-01-15 NMBU Untitled

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