Cristin

2021
1.	Gandla, Madhavi Latha; Mähler, Niklas; Escamez, Sacha; Skotare, Tomas; Obudulu, Ogonna; Möller, Linus; Abreu, Ilka N.; Bygdell, Joakim; Hertzberg, Magnus; Hvidsten, Torgeir Rhoden; Moritz, Thomas; Wingsle, Gunnar; Trygg, Johan; Tuominen, Hannele; Jönsson, Leif J.. Overexpression of vesicle-associated membrane protein PttVAP27-17 as a tool to improve biomass production and the overall saccharification yields in Populus trees. Biotechnology for Biofuels 2021 ;Volum 14. s. - NMBU Untitled

2.	Gillard, Gareth Benjamin; Grønvold, Lars; Røsæg, Line Lieblein; Holen, Matilde Mengkrog; Monsen, Øystein; Koop, Ben F.; Rondeau, Eric B.; Gundappa, Manu Kumar; Mendoza, John; Macqueen, Daniel J.; Rohlfs, Rori V.; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden. Comparative regulomics supports pervasive selection on gene dosage following whole genome duplication. Genome Biology 2021 ;Volum 22. s. - NMBU Untitled

3.	Kajala, Kaisa; Gouran, Mona; Shaar-Moshe, Lidor; Mason, G. Alex; Rodriguez-Medina, Joel; Kawa, Dorota; Pauluzzi, Germain; Reynoso, Mauricio; Canto-Pastor, Alex; Manzano, Concepcion; Lau, Vincent; Artur, Mariana A.S.; West, Donnelly A.; Gray, Sharon B.; Borowsky, Alexander T.; Moore, Bryshal P.; Yao, Andrew I.; Morimoto, Kevin W.; Bajic, Marko; Formentin, Elide; Nirmal, Niba A.; Rodriguez, Alan; Pasha, Asher; Deal, Roger B.; Kliebenstein, Daniel J.; Hvidsten, Torgeir Rhoden; Provart, Nicholas J.; Sinha, Neelima R.; Runcie, Daniel E.; Bailey-Serres, Julia; Brady, Siobhan M.. Innovation, conservation, and repurposing of gene function in root cell type development. Cell 2021 ;Volum 184.(12) s. 3333-3348 NMBU Untitled

4.	Strand, Marius Andre; Yang, Jingjing; Sandve, Simen Rød; Pope, Phillip; Hvidsten, Torgeir Rhoden. Transkingdom network analysis provides insight into host-microbiome interactions in Atlantic salmon. Computational and Structural Biotechnology Journal 2021 ;Volum 19. s. 1028-1034 NMBU Untitled
2020
5.	Abreu, Ilka N.; Johansson, Annika I.; Sokołowska, Katarzyna; Niittylä, Totte; Sundberg, Björn; Hvidsten, Torgeir Rhoden; Street, Nathaniel R.; Moritz, Thomas. A metabolite roadmap of the wood-forming tissue in Populus tremula. New Phytologist 2020 ;Volum 228.(5) s. 1559-1572 NMBU Untitled

6.	Delogu, Francesco; Kunath, Benoit Josef; Evans, PN; Arntzen, Magnus Øverlie; Hvidsten, Torgeir Rhoden; Pope, Phillip Byron. Integration of absolute multi-omics reveals dynamic protein-to-RNA ratios and metabolic interplay within mixed-domain microbiomes. Nature Communications 2020 s. - NMBU Untitled

7.	Delogu, Francesco. Back to Basics: simplifying microbial communities to decrypt complex interactions. : NMBU 2020 100 s. NMBU Untitled

8.	Gillard, Gareth Benjamin; Grønvold, Lars; Røsæg, Line Lieblein; Holen, Matilde Mengkrog; Monsen, Øystein; Koop, Ben F; Rondeau, Eric; Gundappa, Manu Kumar; Mendoza, John; Macqueen, Daniel J; Rohlfs, Rori V; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden. Comparative regulomics reveals pervasive selection on gene dosage following whole genome duplication. BioRxiv 2020 UiT NMBU Untitled

9.	Michalak, Leszek; Gaby, John Christian; Lagos, Leidy; Leanti La Rosa, Sabina; Hvidsten, Torgeir Rhoden; Tetard-Jones, Catherine; Willats, William G.T.; Terrapon, Nicolas; Lombard, Vincent; Henrissat, Bernard; Dröge, Johannes; Arntzen, Magnus Øverlie; Hagen, Live Heldal; Øverland, Margareth; Pope, Phillip Byron; Westereng, Bjørge. Microbiota-directed fibre activates both targeted and secondary metabolic shifts in the distal gut. Nature Communications 2020 ;Volum 11. s. - NMBU Untitled

10.	Sandve, Simen Rød; Hvidsten, Torgeir Rhoden; Gillard, Gareth Benjamin; Grønvold, Lars; Rohlfs, Rori V; Røsæg, Line Lieblein; Holen, Matilde Mengkrog; Øystein, Monsen. Evolution of gene regulation following whole genome duplication. Evolution and Ecology Seminars; 2020-08-26 NMBU UiT Untitled
2019
11.	Bhattacharjee, Payel; Blagojevic, Dajana; Lee, YeonKyeong; Viejo, Marcos; Gillard, Gareth Benjamin; Grønvold, Lars; Hvidsten, Torgeir Rhoden; Sandve, Simen Rød; Lind, Ole Christian; Salbu, Brit; Brede, Dag Anders; Olsen, Jorunn Elisabeth. Sensitivity to gamma irradiation on different developmental stages Norway spruce. SPPS 2019 conference; 2019-08-28 NIBIO NMBU Untitled

12.	Hvidsten, Torgeir Rhoden. Fish ’n’ Chips: Comparative methods for the analysis of gene expression evolution. Genome Center Faculty Seminars; 2019-10-09 NMBU Untitled

13.	Hvidsten, Torgeir Rhoden. Gene co-expression network connectivity is an important determinant of selective constraint. Integrative Genetics & Genomics Graduate Seminar; 2019-10-21 NMBU Untitled

14.	Mulugeta, Teshome Dagne; Nome, Torfinn; To, Thu-Hien; Gundappa, Manu Kumar; Macqueen, Daniel J.; Våge, Dag Inge; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden. SalMotifDB: a tool for analyzing putative transcription factor binding sites in salmonid genomes. BMC Genomics 2019 ;Volum 20.(1) s. - NMBU Untitled

15.	Olsen, Jorunn Elisabeth; Blagojevic, Dajana; Bhattacharjee, Payel; Lee, YeonKyeong; Gillard, Gareth Benjamin; Grønvold, Lars; Hvidsten, Torgeir Rhoden; Sandve, Simen Rød; Lind, Ole Christian; Brede, Dag Anders; Salbu, Brit. Altered hormone metabolism in response to low-moderate doses of gamma radiation. The 2019 International plant growth substances association conference; 2019-09-25 - 2019-09-27 NMBU Untitled

16.	Olsen, Jorunn Elisabeth; Blagojevic, Dajana; Bhattacharjee, Payel; Lee, YeonKyeong; Gillard, Gareth Benjamin; Grønvold, Lars; Hvidsten, Torgeir Rhoden; Sandve, Simen Rød; Lind, Ole Christian; Brede, Dag Anders; Salbu, Brit. Differential sensitivity to gamma radiation in different plant species across the organismal, cell and molecular level. The 2019 Scandinavian Society of Plant Physiology conference; 2019-08-28 - 2019-08-30 NMBU Untitled

17.	Sandve, Simen Rød; Gillard, Gareth Benjamin; Grønvold, Lars; Rohlfs, Rori V; Hvidsten, Torgeir Rhoden. Gene regulatory evolution following whole genome duplication. International Conference on Polyploidy; 2019-06-11 NMBU Untitled

18.	Sandve, Simen Rød; Hvidsten, Torgeir Rhoden; Gillard, Gareth Benjamin; Grønvold, Lars. Gene regulatory evolution following whole genome duplication in salmonids. International Conference on Integrative Salmonid Biology; 2019-11-17 NMBU Untitled

19.	Schubert, Marian; Grønvold, Lars; Marcussen, Thomas; Meseguer, Andrea; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden; Fjellheim, Siri. Evolution of tolerance to temperate climates in the grass subfamily Pooideae. New Phytologist next generation scientist meeting; 2019-07-22 - 2019-07-25 NMBU Untitled

20.	Schubert, Marian; Grønvold, Lars; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden; Fjellheim, Siri. Evolution of cold acclimation and its role in niche transition in the temperate grass subfamily Pooideae. Plant Physiology 2019 ;Volum 180.(1) s. 404-419 NMBU Untitled
2018
21.	Felten, Judith; Vahala, Jorma; Love, Jonathan; Gorzsás, András; Rüggeberg, Markus; Delhomme, Nicolas; Leśniewska, Joanna; Kangasjarvi, Jaakko; Hvidsten, Torgeir Rhoden; Mellerowicz, Ewa; Sundberg, Björn. Ethylene signaling induces gelatinous layers with typical features of tension wood in hybrid aspen. New Phytologist 2018 ;Volum 218.(3) s. 999-1014 NMBU Untitled

22.	Gillard, Gareth Benjamin; Harvey, Thomas Nelson; Gjuvsland, Arne Bjørke; Jin, Yang; Thomassen, Magny Sissel S.; Lien, Sigbjørn; Leaver, Michael; Torgersen, Jacob Seilø; Hvidsten, Torgeir Rhoden; Vik, Jon Olav; Sandve, Simen Rød. Life-stage associated remodeling of lipid metabolism regulation in Atlantic salmon. Molecular Ecology 2018 ;Volum 27.(5) s. 1200-1213 NTNU NMBU Untitled

23.	Kunath, Benoit Josef; Delogu, Francesco; Naas, Adrian Ertsås; Arntzen, Magnus Øverlie; Eijsink, Vincent; Henrissat, Bernard; Hvidsten, Torgeir Rhoden; Pope, Phillip. From proteins to polysaccharides: lifestyle and genetic evolution of Coprothermobacter proteolyticus. The ISME Journal 2018 NMBU Untitled

24.	Kunath, Benoit Josef; Delogu, Francesco; Naas, Adrian Ertsås; Arntzen, Magnus Øverlie; Eijsink, Vincent; Hvidsten, Torgeir Rhoden; Pope, Phillip. From proteins to polysaccharides; adaptations of heterogeneous strains and interactions for biomass co-degradation. 17th International Symposium on Microbial Ecology (ISME17); 2018-08-12 - 2018-08-17 NMBU Untitled

25.	Lin, YC; Wang, Jing; Delhomme, Nicolas; Schiffthaler, Bastian; Sundström, Görel; Zuccolo, Andrea; Nystedt, Björn; Hvidsten, Torgeir Rhoden; de la Torre, Amanda; Cossu, Rosa M.; Hoeppner, Marc P.; Lantz, Henrik; Scofield, Douglas G.; Zamani, Neda; Johansson, Anna; Mannapperuma, Chanaka; Robinson, Kathryn M; Mähler, Niklas; Leitch, Ilia J.; Pellicer, Jaume; Park, Eung-Jun; Van Montagu, Marc; Van de Peer, Yves; Grabherr, Manfred G.; Jansson, Stefan; Ingvarsson, Pär K.; Street, Nathaniel R.. Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen. Proceedings of the National Academy of Sciences of the United States of America 2018 ;Volum 115.(46) s. E10970-E10978 NMBU Untitled

26.	Obudulu, Ogonna; Mähler, Niklas; Skotare, Tomas; Bygdell, Joakim; Abreu, Ilka N.; Ahnlund, Maria; Gandla, Madhavi Latha; Petterle, Anna; Moritz, Thomas; Hvidsten, Torgeir Rhoden; Jönsson, Leif J.; Wingsle, Gunnar; Trygg, Johan; Tuominen, Hannele. A multi-omics approach reveals function of Secretory Carrier-Associated Membrane Proteins in wood formation of Populus trees. BMC Genomics 2018 ;Volum 19.(11) NMBU Untitled

27.	Sandve, Simen Rød; Rohlfs, Rori V; Hvidsten, Torgeir Rhoden. Subfunctionalization versus neofunctionalization after whole-genome duplication. Nature Genetics 2018 ;Volum 50.(7) s. 908-909 NMBU Untitled

28.	Schubert, Marian; Sandve, Simen Rød; Grønvold, Lars; Hvidsten, Torgeir Rhoden; Fjellheim, Siri. Molecular evolution of cold acclimation in temperate grasses (Pooideae). Evolutionary Systems Biology; 2018-04-11 - 2018-04-13 NMBU Untitled

29.	Tylewicz, S.; Petterle, Anna; Marttila, S; Miskolczi, P; Azeez, A; Singh, R. K.; Immanen, Juha; Mähler, Niklas; Hvidsten, Torgeir Rhoden; Eklund, D. M.; Bowman, J. L.; Helariutta, Y.; Bhalerao, Rishikesh. Photoperiodic control of seasonal growth is mediated by ABA acting on cell-cell communication. Science 2018 ;Volum 360.(6385) s. 212-215 NMBU Untitled

30.	Varadharajan, Srinidhi; Sandve, Simen Rød; Gillard, Gareth Benjamin; Tørresen, Ole K.; Mulugeta, Teshome Dagne; Hvidsten, Torgeir Rhoden; Lien, Sigbjørn; Vøllestad, Leif Asbjørn; Jentoft, Sissel; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd. The grayling genome reveals selection on gene expression regulation after whole-genome duplication. Genome Biology and Evolution (GBE) 2018 ;Volum 10.(10) s. 2785-2800 UiO NMBU Untitled
2017
31.	Demko, Viktor; Belova, Tatiana; Hvidsten, Torgeir Rhoden; Perroud, Pierre-Francois; Johansen, Wenche; Olsen, Odd-Arne. Using transcriptomics to link Calpain-controlled development to gene expression networks.. th Norwegian Plant Biology Conference, June 21-22 2017; 2017-06-21 - 2017-06-22 HINN NMBU Untitled

32.	Harvey, Thomas N; Torgersen, Jacob Seilø; Vik, Jon Olav; Hvidsten, Torgeir Rhoden; Gillard, Gareth Benjamin; Sandve, Simen Rød. Precision cut liver slice culture as a platform for studying lipid metabolism in Atlantic salmon. Norwegian Biochemical Society (NBS) annual meeting; 2017-01-19 - 2017-01-22 UiO NMBU Untitled

33.	Hvidsten, Torgeir Rhoden. Gene co-expression network connectivity is an important determinant of selective constraint. Evolution, June 23-27; 2017-07-23 - 2017-07-27 NMBU Untitled

34.	Hvidsten, Torgeir Rhoden. Regulatory evolution after whole genome duplication. Third annual conference of NORBIS; 2017-11-08 - 2017-11-10 NMBU Untitled

35.	Hvidsten, Torgeir Rhoden. The transcriptome of wood formation. 50 Years Plant Science in Umeå Symposium; 2017-08-21 - 2017-08-23 NMBU Untitled

36.	Jokipii-Lukkari, Sile; Sundell, David; Nilsson, Ove; Hvidsten, Torgeir Rhoden; Street, Nathaniel R.; Tuominen, Hannele. NorWood: A gene expression resource for evo-devo studies of conifer wood development. New Phytologist 2017 ;Volum 216.(2) s. 482-494 NMBU Untitled

37.	Mähler, Niklas; Wang, Jing; Terebieniec, B; Ingvarsson, Pär K.; Street, Nathaniel R.; Hvidsten, Torgeir Rhoden. Gene co-expression network connectivity is an important determinant of selective constraint. PLoS Genetics 2017 ;Volum 13.(4) NMBU Untitled

38.	Robertson, Fiona M; Gundappa, Manu Kumar; Grammes, Fabian; Hvidsten, Torgeir Rhoden; Redmond, Anthony K; Lien, Sigbjørn; Martin, Samuel AM; Holland, Peter WH; Sandve, Simen Rød; Macqueen, Daniel J. Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification. Genome Biology 2017 ;Volum 18. s. - NMBU Untitled

39.	Sandve, Simen Rød; Hvidsten, Torgeir Rhoden; Lien, Sigbjørn; Rori, Rohlfs; Jakobsen, Kjetill Sigurd; Nome, Torfinn; Varadharajan, Srinidhi; Nederbragt, Alexander Johan; Vøllestad, Leif Asbjørn. Evolution after whole genome duplication - insights from the salmonids. Evolution Conference; 2017-06-22 UiO NMBU Untitled

40.	Sandve, Simen Rød; Nicola, Barson; Hvidsten, Torgeir Rhoden. Hvorfor har vi sex?. Aftenposten Vitenskap 2017 NMBU Untitled

41.	Schubert, Marian; Grønvold, Lars; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden; Fjellheim, Siri. Molecular evolution of cold response in temperate grasses (Pooideae). Evolution 2017; 2017-07-23 - 2017-07-27 NMBU Untitled

42.	Sundell, David; Street, Nathaniel R.; Kumar, Manoj; Mellerowicz, Ewa; Kucukoglu, Melis; Johnsson, Christoffer; Kumar, Vikash; Mannapperuma, Chanaka; Delhomme, Nicolas; Nilsson, Ove; Tuominen, Hannele; Pesquet, Edouard; Fischer, Urs; Niittylä, Totte; Sundberg, Björn; Hvidsten, Torgeir Rhoden. AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula. The Plant Cell 2017 ;Volum 29.(7) s. 1585-1604 NMBU Untitled
2016
43.	Gillard, Gareth; Harvey, Thomas N; Vik, Jon Olav; Gjuvsland, Arne Bjørke; Lien, Sigbjørn; Hvidsten, Torgeir Rhoden; Sandve, Simen Rød. Metabolic responses in Atlantic salmon omega-3 pathways after dietary switches between fish and vegetable oils. International Conference on Integrative Salmonid Biology (ICISB) 2016; 2016-04-24 - 2016-04-27 NMBU Untitled

44.	Gillard, Gareth; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden. Salmonid gene expression evolution after whole genome duplication. Bay Area Population Genomics Meeting XIV; 2016-09-17 - 2016-09-17 NMBU Untitled

45.	Hermansen, Russell A.; Hvidsten, Torgeir Rhoden; Sandve, Simen Rød; Liberles, David A.. Extracting functional trends from whole genome duplication events using comparative genomics. Biological Procedures Online 2016 ;Volum 18:11. s. - NMBU Untitled

46.	Hvidsten, Torgeir Rhoden. Computational methods for studying the evolution of gene regulation. PhD/Post Doc workshop at Klækken; 2016-09-09 - 2016-09-10 NMBU Untitled

47.	; Hånes, Katrine. Optimizing Transcriptome Analysis using Short-Read RNA-Seq in Atlantic Salmon. Ås: Norges miljø- og biovitenskapelige universitet 2016 29 s. NOFIMA NMBU Untitled

48.	Ingvarsson, Pär K.; Hvidsten, Torgeir Rhoden; Street, Nathaniel R.. Towards integration of population and comparative genomics in forest trees. New Phytologist 2016 ;Volum 212.(2) s. 338-344 NMBU Untitled

49.	Lien, Sigbjørn; Koop, Ben F; Sandve, Simen Rød; Miller, Jason R.; Kent, Matthew Peter; Nome, Torfinn; Hvidsten, Torgeir Rhoden; Leong, Jong; Minkley, David R.; Zimin, Aleksey; Grammes, Fabian; Grove, Harald; Gjuvsland, Arne Bjørke; Walenz, Brian; Hermansen, Russell A.; von Schalburg, Kristian R.; Rondeau, Eric; Genova, Alex Di; Antony Samy, Jeevan Karloss; Vik, Jon Olav; Vigeland, Magnus Dehli; Caler, Lis; Grimholt, Unni; Jentoft, Sissel; Våge, Dag Inge; de Jong, Pieter J.; Moen, Thomas; Baranski, Matthew; Palti, Yniv; Smith, Douglas W.; Yorke, James A.; Nederbragt, Alexander J.; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Jiang, Xuanting; Fan, Dingding; Hu, Yan; Liberles, David A.; Vidal, Rodrigo; Iturra, Patricia; Jones, Steven J.M.; Jonassen, Inge; Maass, Alejandro; Omholt, Stig William; Davidson, William S. The Atlantic salmon genome provides insights into rediploidization. Nature 2016 ;Volum 533.(7602) s. 200-205 NOFIMA NTNU OUS UiB UiO NMBU VETINST Untitled

50.	Obudulu, Ogonna; Bygdell, Joakim; Sundberg, Björn; Moritz, Thomas; Hvidsten, Torgeir Rhoden; Trygg, Johan; Wingsle, Gunnar. Quantitative proteomics reveals protein profiles underlying major transitions in aspen wood development. BMC Genomics 2016 ;Volum 17.(119) NMBU Untitled

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