Cristin

2017
1.	Demko, Viktor; Belova, Tatiana; Hvidsten, Torgeir Rhoden; Perroud, Pierre-Francois; Johansen, Wenche; Olsen, Odd-Arne. Using transcriptomics to link Calpain-controlled development to gene expression networks.. th Norwegian Plant Biology Conference, June 21-22 2017; 2017-06-21 - 2017-06-22 HIHM NMBU Untitled

2.	Harvey, Thomas N; Torgersen, Jacob Seilø; Vik, Jon Olav; Hvidsten, Torgeir Rhoden; Gillard, Gareth Benjamin; Sandve, Simen Rød. Precision cut liver slice culture as a platform for studying lipid metabolism in Atlantic salmon. Norwegian Biochemical Society (NBS) annual meeting; 2017-01-19 - 2017-01-22 UiO NMBU Untitled

3.	Hvidsten, Torgeir Rhoden. Gene co-expression network connectivity is an important determinant of selective constraint. Evolution, June 23-27; 2017-07-23 - 2017-07-27 NMBU Untitled

4.	Hvidsten, Torgeir Rhoden. The transcriptome of wood formation. 50 Years Plant Science in Umeå Symposium; 2017-08-21 - 2017-08-23 NMBU Untitled

5.	Jokipii-Lukkari, S; Sundell, David; Nilsson, Ove; Hvidsten, Torgeir Rhoden; Street, Nathaniel R.; Tuominen, Hannele. NorWood: A gene expression resource for evo-devo studies of conifer wood development. New Phytologist 2017 ;Volum 216. s. 482-494 NMBU Untitled

6.	Mähler, Niklas; Wang, Jing; Terebieniec, B; Ingvarsson, Pär K.; Street, Nathaniel R.; Hvidsten, Torgeir Rhoden. Gene co-expression network connectivity is an important determinant of selective constraint. PLoS Genetics 2017 ;Volum 13.(4) NMBU Untitled

7.	Robertson, Fiona M.; Manu Kumar, Gundappa; Grammes, Fabian; Hvidsten, Torgeir Rhoden; Redmond, Anthony K.; Lien, Sigbjørn; Martin, Samuel A. M.; Holland, Peter W. H.; Sandve, Simen Rød; Macqueen, Daniel J.. Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification. Genome Biology 2017 ;Volum 18. s. 111- NMBU Untitled

8.	Sandve, Simen Rød; Nicola, Barson; Hvidsten, Torgeir Rhoden. Hvorfor har vi sex?. Aftenposten Viten 2017 NMBU Untitled

9.	Sundell, David; Street, Nathaniel R.; Kumar, Manoj; Mellerowicz, Ewa; Kucukoglu, Melis; Johnsson, Christoffer; Kumar, Vikash; Mannapperuma, Chanaka; Delhomme, Nicolas; Nilsson, Ove; Tuominen, Hannele; Pesquet, Edouard; Fischer, Urs; Niittylä, Totte; Sundberg, Björn; Hvidsten, Torgeir Rhoden. AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula. The Plant Cell 2017 ;Volum 29.(7) s. 1585-1604 NMBU Untitled
2016
10.	Gillard, Gareth; Harvey, Thomas N; Vik, Jon Olav; Gjuvsland, Arne Bjørke; Lien, Sigbjørn; Hvidsten, Torgeir Rhoden; Sandve, Simen Rød. Metabolic responses in Atlantic salmon omega-3 pathways after dietary switches between fish and vegetable oils. International Conference on Integrative Salmonid Biology (ICISB) 2016; 2016-04-24 - 2016-04-27 NMBU Untitled

11.	Gillard, Gareth; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden. Salmonid gene expression evolution after whole genome duplication. Bay Area Population Genomics Meeting XIV; 2016-09-17 - 2016-09-17 NMBU Untitled

12.	Hermansen, Russell A.; Hvidsten, Torgeir Rhoden; Sandve, Simen Rød; Liberles, David A.. Extracting functional trends from whole genome duplication events using comparative genomics. Biological Procedures Online 2016 ;Volum 18:11. s. - NMBU Untitled

13.	Hvidsten, Torgeir Rhoden. Computational methods for studying the evolution of gene regulation. PhD/Post Doc workshop at Klækken; 2016-09-09 - 2016-09-10 NMBU Untitled

14.	; Kirste, Katrine Hånes. Optimizing Transcriptome Analysis using Short-Read RNA-Seq in Atlantic Salmon. Ås: Norges miljø- og biovitenskapelige universitet 2016 29 s. NOFIMA NMBU Untitled

15.	Ingvarsson, Pär K.; Hvidsten, Torgeir Rhoden; Street, Nathaniel R.. Towards integration of population and comparative genomics in forest trees. New Phytologist 2016 ;Volum 212.(2) s. 338-344 NMBU Untitled

16.	Lien, Sigbjørn; Koop, Ben F; Sandve, Simen Rød; Miller, Jason R.; Kent, Matthew Peter; Nome, Torfinn; Hvidsten, Torgeir Rhoden; Leong, Jong; Minkley, David R.; Zimin, Aleksey; Grammes, Fabian; Grove, Harald; Gjuvsland, Arne Bjørke; Walenz, Brian; Hermansen, Russell A.; von Schalburg, Kristian R.; Rondeau, Eric; Genova, Alex Di; Antony Samy, Jeevan Karloss; Vik, Jon Olav; Vigeland, Magnus Dehli; Caler, Lis; Grimholt, Unni; Jentoft, Sissel; Våge, Dag Inge; de Jong, Pieter J.; Moen, Thomas; Baranski, Matthew; Palti, Yniv; Smith, Douglas W.; Yorke, James A.; Nederbragt, Alexander J.; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Jiang, Xuanting; Fan, Dingding; Hu, Yan; Liberles, David A.; Vidal, Rodrigo; Iturra, Patricia; Jones, Steven J.M.; Jonassen, Inge; Maass, Alejandro; Omholt, Stig William; Davidson, William S. The Atlantic salmon genome provides insights into rediploidization. Nature 2016 ;Volum 533.(7602) s. 200-205 NOFIMA NTNU OUS UiB UiO NMBU VETINST Untitled

17.	Obudulu, Ogonna; Bygdell, Joakim; Sundberg, Björn; Moritz, Thomas; Hvidsten, Torgeir Rhoden; Trygg, Johan; Wingsle, Gunnar. Quantitative proteomics reveals protein profiles underlying major transitions in aspen wood development. BMC Genomics 2016 ;Volum 17.(119) NMBU Untitled

18.	Sverdrup-Thygeson, Anne; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden. Verdens rareste dyr ble nettopp litt rarere. Aftenposten Viten 2016 NMBU Untitled
2015
19.	Delhomme, Nicolas; Mähler, Niklas; Schiffthaler, Bastian; Sundell, David; Mannapperuma, Chanaka; Hvidsten, Torgeir Rhoden; Street, Nathaniel. EpiGeneSys Protocol. NMBU Untitled

20.	Delhomme, Nicolas; Sundström, Görel; Zamani, Neda; Lantz, Henrik; Lin, Yao-Cheng; Hvidsten, Torgeir Rhoden; Höppner, Marc P.; Jern, Patric; Van de Peer, Yves; Lundeberg, Joakim; Grabherr, Manfred G.; Street, Nathaniel. Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies). PLoS ONE 2015 ;Volum 10:e0139080.(9) NMBU Untitled

21.	Hvidsten, Torgeir Rhoden. Comparative regulomics: computational approaches to reveal the evolution of transcriptional regulation.. Next Generation Sequencing Symposium; 2015-12-10 - 2015-12-11 NMBU Untitled

22.	Hvidsten, Torgeir Rhoden. Seeing the forest for the trees in omics data; examples from aspen and spruce genomics projects. Norwegian Biochemical Society seminar series; 2015-04-09 NMBU Untitled

23.	Mähler, Niklas; Robinson, Kathryn M; Street, Nathaniel; Hvidsten, Torgeir Rhoden. The regulatory landscape of Populus tremula. RegGenSIG at ISMB; 2015-07-10 - 2015-07-14 NMBU Untitled

24.	Sandve, Simen Rød; Hvidsten, Torgeir Rhoden. Hva er likheten mellom en rosinbolle og en laksefilet?. Aftenposten 2015 NMBU Untitled

25.	Sandve, Simen Rød; Hvidsten, Torgeir Rhoden. Om å overleve i en fryser. Aftenposten 2015 NMBU Untitled

26.	Sundell, David; Mannapperuma, Chanaka; Netotea, Sergiu; Delhomme, Nicolas; Lin, Yao-Cheng; Sjödin, Andreas; Van de Peer, Yves; Jansson, Stefan; Hvidsten, Torgeir Rhoden; Street, Nathaniel. The plant genome integrative explorer resource: PlantGenIE.org. New Phytologist 2015 ;Volum 208.(4) s. 1149-1156 NMBU Untitled

27.	Terebieniec, B; Schiffthaler, Bastian; Robinson, Kathryn M; Mähler, Niklas; Delhomme, Nicolas; Hvidsten, Torgeir Rhoden; Street, Nathaniel. Leaf Development Characterisation in European Aspen (Populus tremula). IUFRO Tree Biotechnology Conference. June 8-12, 2015, Florence, Italy; 2015-06-08 - 2015-06-12 NMBU Untitled

28.	Zaborowski, R; Hvidsten, Torgeir Rhoden; Wilczynski, Bartek. Genes co-localization in topologically associating domains indicates higher co-expression. Recomb; 2015-04-12 - 2015-04-15 NMBU Untitled
2014
29.	Delhomme, Nicolas; Mannapperuma, Chanaka; Sundell, David; Mähler, Niklas; Schiffthaler, Bastian; Lin, Yao-Cheng; Felten, Judith; Grabherr, Manfred G.; Van de Peer, Yves; Jansson, Stefan; Sundberg, Björn; Hvidsten, Torgeir Rhoden; Street, Nathaniel. A Cautionary Tale of Using RNAseq Data: Examples from Large-Scale Projects at the Umeå Plant Science Centre. Plant & Animal Genome XXII Conference; 2014-01-11 - 2014-01-15 NMBU Untitled

30.	Hvidsten, Torgeir Rhoden. Comparative Analysis of Gene Regulatory Networks in Plants. Swedish University of Agricultural Sciences; 2014-03-28 - 2014-03-28 NMBU Untitled

31.	Mähler, Niklas; Cheregi, Otilia; Funk, Christiane; Netotea, Sergiu; Hvidsten, Torgeir Rhoden. Synergy: A web resource for exploring gene regulation in Synechocystis sp. PCC6803. PLoS ONE 2014 ;Volum 9.(11) NMBU Untitled

32.	Mähler, Niklas; Netotea, Sergiu; Hvidsten, Torgeir Rhoden. Synergy: A Web Resource for Exploring Gene Expression in Synechocystis sp. PCC6803. Plant & Animal Genome XXII Conference; 2014-01-11 - 2014-01-15 NMBU Untitled

33.	Netotea, Sergiu; Sundell, David; Mähler, Niklas; Delhomme, Nicolas; Street, Nathaniel; Hvidsten, Torgeir Rhoden. Comparative Analysis of Gene Regulatory Networks in Plants. Plant & Animal Genome XXII Conference; 2014-01-11 - 2014-01-15 NMBU Untitled

34.	Netotea, Sergiu; Sundell, David; Street, Nathaniel; Hvidsten, Torgeir Rhoden. ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa. BMC Genomics 2014 ;Volum 15. s. - NMBU Untitled

35.	Pfeifer, Matthias; Kugler, Karl G.; Sandve, Simen Rød; Zhan, Bujie; Rudi, Heidi; Hvidsten, Torgeir Rhoden; Paux, Etienne; Mayer, Klaus; Olsen, Odd-Arne. The Transcriptional Landscape of Bread Wheat. Plant & Animal Genome XXII Conference; 2014-01-11 - 2014-01-15 NMBU Untitled

36.	Pfeifer, Matthias; Kugler, Karl G; Sandve, Simen Rød; Zhan, Bujie; Rudi, Heidi; Hvidsten, Torgeir Rhoden; Mayer, Klaus F X; Olsen, Odd-Arne. Genome interplay in the grain transcriptome of hexaploid bread wheat. Science 2014 ;Volum 345.(6194) NMBU Untitled

37.	Robinson, Kathryn M; Delhomme, Nicolas; Mähler, Niklas; Schiffthaler, Bastian; Önskog, Jenny; Albrectsen, Benedicte Rieber; Ingvarsson, Pär K.; Hvidsten, Torgeir Rhoden; Jansson, Stefan; Street, Nathaniel R.. Populus tremula (European aspen) shows no evidence of sexual dimorphism. BMC Plant Biology 2014 ;Volum 14:276. NMBU Untitled

38.	Sandve, Simen Rød; Hvidsten, Torgeir Rhoden. Bjørgen-koden. Aftenposten Viten 2014 NMBU Untitled

39.	Schubert, Marian; Grønvold, Lars; Sandve, Simen Rød; Hvidsten, Torgeir Rhoden; Fjellheim, Siri. Evolution of vernalization in the grass subfamily Pooideae – an integrated approach. Plant Genomics Congress; 2014-05-12 - 2014-05-13 NMBU Untitled

40.	Schubert, Marian; Sandve, Simen Rød; Grønvold, Lars; Hvidsten, Torgeir Rhoden; Fjellheim, Siri. Evolution of vernalization and daylength response in the grass subfamily Pooideae as an adaptation to seasonal and cool climates. Genetic Resources for Food and Agriculture in a Changing Climate; 2014-01-27 - 2014-01-29 NMBU Untitled

41.	Schubert, Marian; Sandve, Simen Rød; Grønvold, Lars; Hvidsten, Torgeir Rhoden; Fjellheim, Siri. Evolution of vernalization and daylength response in the grass subfamily Pooideae as an adaptation to seasonal and cool climates. ForBio Annual Meeting 2014; 2014-02-24 - 2014-02-26 NMBU Untitled

42.	Sundell, David; Netotea, Sergiu; Hvidsten, Torgeir Rhoden; Street, Nathaniel. PlantGenIE - the Plant Genome Integrative Explorer. Plant & Animal Genome XXII Conference; 2014-01-11 - 2014-01-15 NMBU Untitled
2013
43.	Hvidsten, Torgeir Rhoden. Comparative analysis of gene regulatory network in plants. Seminar at the Computational Biology Group, Faculty of Mathematics, Informatics and Mechanics, University of Warsaw; 2013-02-27 NMBU Untitled

44.	Immanen, Juha; Nieminen, Kaisa; Silva, Héctor Duchens; Rojas, Fernanda Rodríguez; Meisel, Lee A; Silva, Herman; Albert, Victor A.; Hvidsten, Torgeir Rhoden; Helariutta, Ykä. Characterization of cytokinin signaling and homeostasis gene families in two hardwood tree species: Populus trichocarpa and Prunus persica. BMC Genomics 2013 ;Volum 14.(885) NMBU Untitled

45.	Miranda, Hélder; Cheregi, Otilia; Netotea, Sergiu; Hvidsten, Torgeir Rhoden; Moritz, Thomas; Funk, Christiane. Co-expression analysis, proteomic and metabolomic study on the impact of a Deg/HtrA protease triple mutant in Synechocystis sp. PCC 6803 exposed to temperature and high light stress. Journal of Proteomics 2013 ;Volum 78. s. 294-311 Untitled

46.	Netotea, Sergiu; Sundell, David; Street, Nathaniel; Hvidsten, Torgeir Rhoden. ComPlEx: A tool for studying conservation and divergence of co-expression networks in A. thaliana, Populus, O.sativa. Plant Genomics Congress; 2013-05-13 - 2013-05-14 NMBU Untitled

47.	Nystedt, Björn; Street, Nathaniel; Wetterbom, Anna; Zuccolo, A; Lin, Yao-Cheng; Scofield, Douglas G; Vezzi, Francesco; Delhomme, Nicolas; Giacomello, Stefania; Alexeyenko, Andrey; Vicedomini, Riccardo; Sahlin, Kristoffer; Sherwood, Ellen; Elfstrand, Malin; Gramzow, Lydia; Holmberg, Kristina; Hällman, Jimmy; Keech, Oliver; Klasson, Lisa; Koriabine, Maxim; Kucukoglu, Melis; Käller, Max; Luthman, Johannes; Lysholm, Fredrik; Niittylä, Totte; Olson, Åke; Rilakovic, Nemanja; Ritland, Carol; Rossello, Josep A; Sena, Juliana; Svensson, Thomas; Talavera-Lopez, Carlos; Theissen, Günther; Tuominen, Hannele; Vanneste, Kevin; Wu, Zhi-Qiang; Zhang, Bo; Zerbe, Philipp; Arvestad, Lars; Bhalerao, Rishikesh; Bohlmann, Joerg; Bousquet, Jean; Gil, Rosario Garcia; Hvidsten, Torgeir Rhoden; de Jong, Pieter J.; MacKay, John; Morgante, Michele; Ritland, Kermit; Sundberg, Björn; Thompson, Stacey Lee; Van de Peer, Yves; Andersson, Björn; Nilsson, Ove; Ingvarsson, Pär K.; Lundeberg, Joakim; Jansson, Stefan. The Norway spruce genome sequence and conifer genome evolution. Nature 2013 ;Volum 49. s. 579-584 NMBU Untitled

48.	Srivastava, Vaibhav; Obudulu, Ogonna; Bygdell, Joakim; Löfstedt, Tommy; Rydén, Patrik; Nilsson, Robert; Ahnlund, Maria; Johansson, Annika; Jonsson, Pär; Freyhult, Eva; Qvarnström, Johanna; Karlsson, Jan; Melzer, Michael; Moritz, Thomas; Trygg, Johan; Hvidsten, Torgeir Rhoden; Wingsle, Gunnar. OnPLS integration of transcriptomic, proteomic and metabolomic data shows multi-level oxidative stress responses in the cambium of transgenic hipI- superoxide dismutase Populus plants. BMC Genomics 2013 ;Volum 14.(893) NMBU Untitled
2009
49.	Hvidsten, Torgeir; Lægreid, Astrid; Kryshtafovych, Andriy; Andersson, Gunnar; Fidelis, Krzysztof; Komorowski, J. A comprehensive analysis of the structure-function relationship in proteins based on local structure similarity. PLoS ONE 2009 ;Volum 4.(7) s. e6266- NTNU Untitled

50.	Wabnik, K; Hvidsten, TR; Kedzierska, A; Van Leene, J; De Jaeger, G; Beemster, GTS; Komorowski, J; Kuiper, Martin. Gene expression trends and protein features effectively complement each other in gene function prediction. Bioinformatics 2009 ;Volum 25.(3) s. 322-330 NTNU Untitled

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