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2020
1 Chu, Dinh Toi; Phuong, Thuy Nguyen Thi; Tien, Nguyen Le Bao; Tran, Dang Khoa; Thanh, Vo Van; Quang, Thuy Luu; Truong, Dang Tien; Pham, Van-Huy; Ngoc, Vo Truong Nhu; Chu-Dinh, Thien; Kushekhar, Kushi.
An update on the progress of isolation, culture, storage, and clinical application of human bone marrow mesenchymal stem/stromal cells. International Journal of Molecular Sciences 2020 ;Volum 21:708.(3) s. 1-27
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2 Fan, Qiong; Nørgaard, Rikke Christine; Grytten, Ivar; Ness, Cecilie Maria; Lucas, Christin; Vekterud, Kristin; Soedling, Helen; Matthews, Jason; Lemma, Roza Berhanu; Gabrielsen, Odd Stokke; Bindesbøll, Christian; Ulven, Stine Marie; Nebb, Hilde Irene; Grønning-Wang, Line Mariann; Sæther, Thomas.
LXRα Regulates ChREBPα Transactivity in a Target Gene-Specific Manner through an Agonist-Modulated LBD-LID Interaction. Cells 2020 ;Volum 9.(5)
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3 Khalid, Khalisanni; Tan, Xuefei; Mohd Zaid, Hayyiratul Fatimah; Tao, Yang; Lye Chew, Chien; Chu, Dinh Toi; Lam, Man Kee; Ho, Yeek-Chia; Lim, Jun Wei; Chin Wei, Lai.
Advanced in developmental organic and inorganic nanomaterial: a review. Bioengineered 2020 ;Volum 11.(1) s. 328-355
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4 Lindner, Paula Maria; Christensen, Søren Brøgger; Nissen, Poul; Møller, Jesper Vuust; Engedal, Nikolai.
Cell death induced by the ER stressor thapsigargin involves death receptor 5, a non-autophagic function of MAP1LC3B, and distinct contributions from unfolded protein response components. Cell Communication and Signaling 2020 ;Volum 18.(1) s. 1-23
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5 Martîn, Ruth Martîn; Stonyte, Vilte; Lopez Aviles, Sandra.
Protein phosphatases in G1 regulation. International Journal of Molecular Sciences 2020 ;Volum 21:395.(2) s. 1-15
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6 Meås, Hany Zakaria; Haug, Markus; Beckwith, Marianne Sandvold; Louet, Claire; Ryan, Liv; Hu, Zhenyi; Landskron, Johannes; Nordbø, Svein Arne; Tasken, Kjetil; Yin, Hang; Damås, Jan Kristian; Flo, Trude Helen.
Sensing of HIV-1 by TLR8 activates human T cells and reverses latency. Nature Communications 2020 ;Volum 11.
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7 Waszak, Sebastian Martin.
Versatile workflow for cell type resolved transcriptional and epigenetic profiles from cryopreserved human lung. BioRxiv 2020
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2019
8 Copmans, Daniëlle; Kildgaard, Sara; Rasmussen, Silas A.; Ślęzak, Monika; Dirkx, Nina; Partoens, Michèle; Esguerra, Camila Vicencio; Crawford, Alexander Dettmar; Larsen, Thomas O.; de Witte, Peter A.M..
Zebrafish-based discovery of antiseizure compounds from the north sea: Isoquinoline alkaloids TMC-120A and TMC-120B. Marine Drugs 2019 ;Volum 17:607.(11) s. 1-20
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9 Abudu, Yakubu Princely; Pankiv, Serhiy; Mathai, Benan John; Lystad, Alf Håkon; Bindesbøll, Christian; Brenne, Hanne Britt; Ng, Matthew Yoke Wui; Thiede, Bernd; Yamamoto, Ai; Nthiga, Thaddaeus Mutugi; Lamark, Trond; Esguerra, Camila Vicencio; Johansen, Terje; Simonsen, Anne.
NIPSNAP1 and NIPSNAP2 act as “eat-me signal” for mitophagy. Developmental Cell 2019 ;Volum 49.(4) s. 509-525.e12
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10 Ali Ahmad, Ahmad; Bilokapic, Silvija; Schafer, Ingmar B; Halic, Mario; Sekulic, Nikolina.
CENP‐C unwraps the human CENP‐A nucleosome through the H2A C‐terminal tail. EMBO Reports 2019
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11 Banerjee, Debarshi; Cieslar-Pobuda, Artur; Zhu, Geyunjian Harry; Wiechec, Emilia; Patra, Hirak K..
Adding Nanotechnology to the Metastasis Treatment Arsenal. TIPS - Trends in Pharmacological Sciences 2019 ;Volum 40.(6) s. 403-418
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12 Barnett, Ian; Nishant, Malik; Kuijjer, Marieke Lydia; Mucha, Peter; Onnela, Jukka-Pekka.
Feature-based classification of networks. Network Science 2019 ;Volum 7.(3) s. 438-444
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13 Behringer, Sidney; Wingert, Victoria; Oria, Victor; Schumann, Anke; Grünert, Sarah; Cieslar-Pobuda, Artur; Kölker, Stefan; Lederer, Ann-Kathrin; Jacobsen, Donald W.; Stärk, Judith; Schilling, Oliver; Spiekerkoetter, Ute; Hannibal, Luciana.
Targeted metabolic profiling of methionine cycle metabolites and redox thiol pools in mammalian plasma, cells and urine. Metabolites 2019 ;Volum 9:235.(10) s. 1-27
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14 Bösl, Korbinian; Ianevski, Aleksandr; Than, Thoa T.; Andersen, Petter I.; Kuivanen, Suvi; Mona, Teppor; Zusinaite, Eva; Dumpis, Uga; Vitkauskiene, Astra; Cox, Rebecca J.; Kallio-Kokko, Hannimari; Bergqvist, Anders; Tenson, Tanel; Merits, Andres; Oksenych, Valentyn; Bjørås, Magnar; Anthonsen, Marit Walbye; Shum, David H.K.; Kaarbø, Mari; Vapalahti, Olli; Windisch, Marc P; Superti-Furga, Giulio; Snijder, Berend; Kainov, Denis; Kandasamy, Richard Kumaran.
Critical Nodes of Virus–Host Interaction Revealed Through an Integrated Network Analysis. International Conference on Molecular Mechanisms of Inflammation; 2019-06-03 - 2019-06-06
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15 Bösl, Korbinian; Ianevski, Aleksandr; Than, Thoa T.; Andersen, Petter I.; Teppor, Mona; Zusinaite, Eva; Dumpis, Uga; Vitkauskiene, Astra; Cox, Rebecca Jane; Kallio-Kokko, Hannimari; Bergqvist, Anders; Tenson, Tanel; Merits, Andres; Oksenych, Valentyn; Bjørås, Magnar; Anthonsen, Marit Walbye; Shum, David H.K.; Kaarbø, Mari; Windisch, Marc P.; Superti-Furga, Giulio; Snijder, Berend; Kainov, Denis; Kandasamy, Richard Kumaran.
Critical Nodes of Viral Modulation Revealed Through an Integrated Network Analysis of Host-Virus Interaction Landscape. Norwegian Biochemical Society 55th Contact Meeting; 2019-01-24 - 2019-01-27
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16 Bösl, Korbinian; Ianevski, Aleksandr; Than, Thoa T.; Anderssen, Petter Inge; Kuivanen, Suvi; Teppor, Mona; Zusinaite, Eva; Dumpis, Uga; Vitkauskiene, Astra; Cox, Rebecca Jane; Kallio-Kokko, Hannimari; Bergqvist, Anders; Tenson, Tanel; Merits, Andres; Oksenych, Valentyn; Bjørås, Magnar; Anthonsen, Marit Walbye; Shum, David H.K.; Kaarbø, Mari; Vapalahti, Olli; Windisch, Marc P.; Superti-Furga, Giulio; Snijder, Berend; Kainov, Denis; Kandasamy, Richard Kumaran.
Common nodes of virus-host interaction revealed through an integrated network analysis. Frontiers in Immunology 2019 ;Volum 10. s. -
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17 Braadland, Peder Rustøen; Ramberg, Håkon Andre; Grytli, Helene Hartvedt; Urbanucci, Alfonso; Nielsen, Heidi Kristin; Guldvik, Ingrid Jenny; Engedahl, Andreas; Ketola, Kirsi; Wanzhong, Wang; Svindland, Aud; Mills, Ian Geoffrey; Bjartell, Anders; Tasken, Kristin Austlid.
The β2-adrenergic receptor is a molecular switch for neuroendocrine transdifferentiation of prostate cancer cells. Molecular Cancer Research 2019 ;Volum 17.(11) s. 2154-2168
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18 Brennecke, Philip; Rasina, Dace; Aubi Catevilla, Oscar; Herzog, Katja; Landskron, Johannes; Cautain, Bastien; Vicente, Francisca; Quintana, Jordi; Mestres, Jordi; Stechmann, Bahne; Ellinger, Bernhard; Brea, Jose; Kolanowski, Jacek L.; Pilarski, Radosław; Orzáez, Mar; Pineda-Lucena, Antonio; Laraia, Luca; Nami, Faranak; Zielenkiewicz, Piotr; Paruch, Kamil; Hansen, Espen; von Kries, Jens P.; Neuenschwander, Martin; Specker, Edgar; Bartunek, Petr; Šímová, Šárka; Leśnikowski, Zbigniew; Krauss, Stefan; Lehtiö, Lari; Bilitewski, Ursula; Brönstrup, Mark; Tasken, Kjetil; Jirgensons, Aigars; Lickert, Heiko; Clausen, Mads H.; Andersen, Jeanette hammer; Vicent, Maria J.; Genilloud, Olga; Martinez, Aurora; Nazaré, Marc; Fecke, Wolfgang; Gribbon, Philip.
EU-OPENSCREEN: A novel collaborative approach to facilitate chemical biology. SLAS Discovery 2019 ;Volum 24.(3) s. 398-413
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19 Chellappa, Stalin; Kushekhar, Kushi; Munthe, Ludvig Andre; Tjønnfjord, Geir Erland; Aandahl, Einar Martin; Okkenhaug, Klaus; Tasken, Kjetil.
The PI3K p110δ isoform inhibitor idelalisib preferentially inhibits human regulatory T cell function. Journal of Immunology 2019 ;Volum 202.(5) s. 1397-1405
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20 Connell, Shea P; Yazbek-Hanna, Marcelino; McCarthy, Frank; Hurst, Rachel; Webb, Martyn; Curley, Helen; Walker, Helen; Mills, Rob; Ball, Richard Y; Sanda, Martin G.; Pellegrini, Kathryn L; Patil, Dattatraya; Perry, Antoinette; Schalken, Jack A.; Pandha, Hardev; Whitaker, Hayley; Dennis, Nening; Stuttle, Christine; Mills, Ian Geoffrey; Guldvik, Ingrid; Parker, Chris; Brewer, Daniel; Cooper, Colin S.; Clark, Jeremy P..
A four‐group urine risk classifier for predicting outcomes in patients with prostate cancer. BJU International 2019 ;Volum 124.(4) s. 609-620
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21 Cuminetti, Vincent; Arranz, Lorena.
Bone Marrow Adipocytes: The Enigmatic Components of the Hematopoietic Stem Cell Niche. Journal of Clinical Medicine 2019 ;Volum 8.(5) s. 707-
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22 Dung, Truong Manh; Ngoc, Vo Truong Nhu; Hiep, Nguyen Hung; Khoi, Truong Dinh; Xiem, Vu Van; Chu-Dinh, Thien; Cieslar-Pobuda, Artur; Stoufi, Eleana; Show, Pau Loke; Tao, Yang; Bac, Nguyen Duy; Van Ba, Nguyen; Le, Quynh-Anh; Pham, Van-Huy; Chu, Dinh Toi.
Evaluation of dental arch dimensions in 12 year-old Vietnamese children - A cross-sectional study of 4565 subjects. Scientific Reports 2019 ;Volum 9.(1)
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23 Engedal, Nikolai; Luhr, Morten; Szalai, Paula; Seglen, Per O..
Measurement of Bulk Autophagy by a Cargo Sequestration Assay. Methods in molecular biology 2019 ;Volum 1880. s. 307-313
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24 Fagny, Maud; Platig, John; Kuijjer, Marieke Lydia; Lin, Xihong; Quackenbush, John.
Nongenic cancer-risk SNPs affect oncogenes, tumour-suppressor genes, and immune function. British Journal of Cancer 2019 s. -
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25 Fan, Qiong; Nørgaard, Rikke Christine; Grytten, Ivar; Ness, Cecilie Maria; Lucas, Christin; Vekterud, Kristin; Södling, Helen; Matthews, Jason; Lemma, Roza Berhanu; Gabrielsen, Odd Stokke; Bindesbøll, Christian; Ulven, Stine Marie; Nebb, Hilde Irene; Grønning-Wang, Line Mariann; Sæther, Thomas.
LXRα interacts with the glucose-sensing transcription factor ChREBPα to regulate its transcriptional activity.. EMBO | EMBL Symposium: Metabolism Meets Epigenetics; 2019-11-20 - 2019-11-23
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26 Fan, Qiong; Nørgaard, Rikke Christine; Grytten, Ivar; Ness, Cecilie Maria; Lucas, Christin; Vekterud, Kristin; Soedling, Helen; Matthews, Jason; Lemma, Roza Berhanu; Gabrielsen, Odd Stokke; Bindesbøll, Christian; Ulven, Stine Marie; Nebb, Hilde Irene; Grønning-Wang, Line Mariann; Sæther, Thomas.
Open the LID: LXRα regulates ChREBPα transactivity in a target gene-specific manner through an agonist-modulated LBD-LID interaction. BioRxiv 2019 s. -
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27 Feng, Huijuan; Bao, Suying; Rahman, Mohammad Alinoor; Weyn-Vanhentenryck, Sebastien M.; Khan, Aziz; Wong, Justin YY; Shah, Ankeeta; Flynn, Elise D.; Krainer, Adrian R.; Zhang, Chaolin.
Modeling RNA-Binding Protein Specificity In Vivo by Precisely Registering Protein-RNA Crosslink Sites. Molecular Cell 2019 ;Volum 74.(6) s. 1189-1204
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28 Fornes, Oriol; Castro Mondragón, Jaime Abraham; Khan, Aziz; Robin van der, Lee; Zhang, Xi; A. Richmond, Phillip; P. Modi, Bhavi; Correard, Solenne; Gheorghe, Marius; Baranasic, Damir; Santana-Garcia, Walter; Tan, Ge; Cheneby, Jeanne; Ballester, Benoit; Parcy, François; Sandelin, Albin; Lenhard, Boris; Wasserman, Wyeth W.; Mathelier, Anthony.
JASPAR 2020: update of the open-access database of transcription factor binding profiles. Nucleic Acids Research 2019 ;Volum 48. s. 87-92
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29 Fromm, Bastian; Domanska, Diana Ewa; Høye, Eirik; Ovchinnikov, Vladimir; Kang, Wenjing; Aparicio-Puerta, Ernesto; Johansen, Morten; Flatmark, Kjersti; Mathelier, Anthony; Hovig, Eivind; Hackenberg, Michael; Friedländer, Marc R.; Peterson, Kevin J..
MirGeneDB 2.0: the metazoan microRNA complement. Nucleic Acids Research 2019 ;Volum 48.(D1) s. D132-D141
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30 Gawel, Kinga Aurelia; Banono, Nancy Saana; Michalak, Agnieszka; Esguerra, Camila Vicencio.
A critical review of zebrafish schizophrenia models: Time for validation?. Neuroscience and Biobehavioral Reviews 2019 ;Volum 107. s. 6-22
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31 Gawel, Kinga Aurelia; Turski, Waldemar A.; van der Ent, Wietske; Mathai, Benan John; Kirstein-Smardzewska, Karolina Joanna; Simonsen, Anne; Esguerra, Camila V..
Phenotypic Characterization of Larval Zebrafish (Danio rerio) with Partial Knockdown of the cacna1a Gene. Molecular Neurobiology 2019 s. -
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32 Gheorghe, Marius; Sandve, Geir Kjetil; Khan, Aziz; Cheneby, Jeanne; Ballester, Benoit; Mathelier, Anthony.
A map of direct TF–DNA interactions in the human genome. Nucleic Acids Research 2019 ;Volum 47.(4) s. e21-
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33 Goodridge, Jodie; Jacobs, Benedikt Marcel; Sætersmoen, Michelle Lu; Clement, Dennis; Hammer, Quirin; Clancy, Trevor; Skarpen, Ellen; Brech, Andreas; Landskron, Johannes; Grimm, Christian; Pfefferle, Aline; Meza, Leonardo Zepeda; Lorenz, Susanne; Wiiger, Merete Thune; Louch, William Edward; Ask, Eivind Heggernes; Liu, Lisa L.; Oei, Vincent Yi Sheng; Kjällquist, Una; Linnarsson, Sten; Patel, Sandip; Tasken, Kjetil; Stenmark, Harald; Malmberg, Karl-Johan.
Remodeling of secretory lysosomes during education tunes functional potential in NK cells. Nature Communications 2019 ;Volum 10:14. s. 1-15
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34 Gözen, Irep.
A Hypothesis for Protocell Division on the Early Earth. ACS Nano 2019 ;Volum 13.(10) s. 10869-10871
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35 Gupta, Abhay; Gözen, Irep; Taylor, Michael.
A cellular automaton for modeling non-trivial biomembrane ruptures. Soft Matter 2019 ;Volum 15.(20) s. 4178-4186
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36 Ha, Thomas J.; Zhang, Peter G.Y.; Robert, Remi; Yeung, Joanna; Swanson, Douglas J.; Mathelier, Anthony; Wasserman, Wyeth W.; Im, Sujin; Itoh, Masayoshi; Kawaji, Hideya; Lassmann, Timo; Daub, Carsten O.; Arner, Erik; Carninci, Piero; Hayashizaki, Yoshihide; Forrest, Alistair R.R.; Goldowitz, Daniel.
Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis. BMC Genomics 2019 ;Volum 20.(718) s. 1-17
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37 Halnes, Geir; Pettersen, Klas Henning; Øyehaug, Leiv; Rognes, Marie Elisabeth; Einevoll, Gaute.
Astrocytic Ion Dynamics: Implications for Potassium Buffering and Liquid Flow. I: Computational Glioscience. Springer Nature 2019 ISBN 978-3-030-00817-8. s. 363-391
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38 Handle, Florian; Prekovic, Stefan; Helsen, Christine; van den Broeck, Thomas; Smeets, Elien; Moris, Lisa; Eerlings, Roy; El Kharraz, Sarah; Urbanucci, Alfonso; Mills, Ian Geoffrey; Joniau, Steven; Attard, Gerhardt; Claessens, Frank.
Drivers of AR indifferent anti-androgen resistance in prostate cancer cells. Scientific Reports 2019 ;Volum 9.(13786) s. 1-11
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39 Haug, Markus; Meås, Hany Zakaria; Beckwith, Marianne Sandvold; Louet, Claire; Ryan, Liv; Hu, Z.; Landskron, Johannes; Nordbø, Svein Arne; Tasken, Kjetil; Yin, H. H.; Damås, Jan Kristian; Flo, Trude Helen.
P1511 - Sensing of HIV-1 nucleic acids by TLR8 in human CD4+ T cells. European Journal of Immunology 2019 ;Volum 43. Suppl. S3 s. 1-2223
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40 Haug, Markus; Meås, Hany Zakaria; Beckwith, Marianne Sandvold; Louet, Claire; Ryan, Liv; Hu, Z.; Landskron, Johannes; Nordbø, Svein Arne; Tasken, Kjetil; Yin, H. H.; Damås, Jan Kristian; Flo, Trude Helen.
Sensing of HIV-1 by TLR8 in human CD4+ T cells. 45th Annual Meeting of the Scandinavian Society for Immunology (SSI); 2019-04-02 - 2019-04-05
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41 Haug, Markus; Meås, Hany Zakaria; Beckwith, Marianne Sandvold; Louet, Claire; Ryan, Liv; Hu, Z.; Landskron, Johannes; Nordbø, Svein Arne; Tasken, Kjetil; Yin, H. H.; Damås, Jan Kristian; Flo, Trude Helen.
Sensing of HIV-1 nucleic acids by TLR8 in human CD4+ T cells. 17th Congress of the International Union of Immunological Societies (IUIS); 2019-10-19 - 2019-10-23
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42 Horowitz, Viva R; Chambers, Zachary C; Gözen, Irep; Dimiduk, Thomas G; Manoharan, Vinothan N.
Active colloidal particles in emulsion droplets: a model system for the cytoplasm. The European Physical Journal Special Topics 2019 ;Volum 227.(17) s. 2413-2424
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43 Itkonen, Harri; Poulose, Ninu; Walker, Suzanne; Mills, Ian Geoffrey.
CDK9 Inhibition Induces a Metabolic Switch that Renders Prostate Cancer Cells Dependent on Fatty Acid Oxidation. Neoplasia 2019 ;Volum 21.(7) s. 713-720
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44 Itkonen, Harri; Urbanucci, Alfonso; Sara ES, Martin; Khan, Aziz; Mathelier, Anthony; Thiede, Bernd; Walker, Suzanne; Mills, Ian Geoffrey.
High OGT activity is essential for MYC-driven proliferation of prostate cancer cells. Theranostics 2019 ;Volum 9.(8) s. 2183-2197
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45 Joemetsa, Silver; Spustová, Karolina; Kustanovich, Kiryl; Ainla, Alar; Schindler, Severin; Eigler, Siegfried; Lobovkina, Tatsiana; Lara-Avila, Samuel; Jesorka, Aldo; Gözen, Irep.
Molecular Lipid Films on Microengineering Materials. Langmuir 2019 ;Volum 35.(32) s. 10286-10298
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46 Kamiński, Krzysztof; Socała, Katarzyna; Zagaja, Mirosław; Andres-Mach, Marta; Abram, Michał; Jakubiec, Marcin; Pieróg, Mateusz; Nieoczym, Dorota; Rapacz, Anna; Esguerra, Camila V.; Gawel, Kinga Aurelia; Latacz, Gniewomir; Lubelska, Annamaria; Szulczyk, Bartłomiej; Szewczyk, Aleksandra; Łuszczki, Jarogniew Jacek; Wlaź, Piotr.
N-Benzyl-(2,5-dioxopyrrolidin-1-yl)propanamide (AS-1) with Hybrid Structure as a Candidate for a Broad-Spectrum Antiepileptic Drug. Neurotherapeutics 2019 s. -
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47 Keskitalo, Salla; Haapaniemi, Emma M.; Glumoff, Virpi; Liu, Xiaonan; Lehtinen, Ville; Fogarty, Christopher; Rajala, Hanna; Chiang, Samuel C.; Mustjoki, Satu; Kovanen, Panu; Lohi, Jouko; Bryceson, Yenan; Seppänen, Mikko; Kere, Juha; Heiskanen, Kaarina; Varjosalo, Markku.
Dominant TOM1 mutation associated with combined immunodeficiency and autoimmune disease. NPJ GENOMIC MEDICINE 2019 ;Volum 4:14. s. 1-7
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48 Khan, Aziz; Zhang, Xuegong.
Integrative modeling reveals key chromatin and sequence signatures predicting super-enhancers. Scientific Reports 2019 ;Volum 9.(1) s. 1-15
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49 Köksal, Elif; Belletati, Patrícia Fernandes; Reint, Ganna; Olsson, Ragni; Leitl, Kira; Kantarci, Ilayda; Gözen, Irep.
Spontaneous Formation and Rearrangement of Artificial Lipid Nanotube Networks as a Bottom-Up Model for Endoplasmic Reticulum. Journal of Visualized Experiments 2019 ;Volum 2019.(143) s. 1-9
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50 Köksal, Elif; Liese, Susanne; Kantarci, Ilayda; Olsson, Ragni; Carlson, Andreas; Gözen, Irep.
Nanotube-Mediated Path to Protocell Formation. ACS Nano 2019 ;Volum 13.(6) s. 6867-6878
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