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2021
1 Cunha, Eva; Chen, Xiaorui; Sanz Gaitero, Marta; Mills J, Deryck; Luecke, Hartmut.
Cryo-EM structure of Helicobacter pylori urease with an inhibitor in the active site at 2.0 Å resolution. Nature Communications 2021 ;Volum 12:230. s. 1-8
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2 Grad, Iwona; Hanes, Robert; Ayuda-Durán, Pilar; Kuijjer, Marieke Lydia; Enserink, Jorrit; Meza-Zepeda, Leonardo A; Myklebost, Ola.
Discovery of novel candidates for anti- liposarcoma therapies by medium-scale high-throughput drug screening. PLOS ONE 2021 ;Volum 16.(3)
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3 Lemma, Roza Berhanu; Ledsaak, Marit; Fuglerud, Bettina Maria; Sandve, Geir Kjetil; Eskeland, Ragnhild; Gabrielsen, Odd Stokke.
Chromatin occupancy and target genes of the haematopoietic master transcription factor MYB. Scientific Reports 2021 ;Volum 11.(9008)
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2020
4 Ali Ahmad, Ahmad; Sekulic, Nikolina.
CENP-A nucleosome-a chromatin-embedded pedestal for the centromere: lessons learned from structural biology. Essays in Biochemistry 2020 ;Volum 64.(2) s. 205-221
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5 Andreeva, Olga; Li, Wei; Ding, Wei; Kuijjer, Marieke Lydia; Quackenbush, John; Chen, Ping.
Catalysis Clustering with GAN by Incorporating Domain Knowledge. I: KDD '20: Proceedings of the 26th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining. Association for Computing Machinery (ACM) 2020 ISBN 978-1-4503-7998-4. s. 1344-1352
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6 Arain, Fizza Kanwal; Abraityte, Judita Aurelija; Bogdanova, Mariia; Solberg, Ole Geir; Michelsen, Annika; Lekva, Tove; Aakhus, Svend; Holm, Sverre; Halvorsen, Bente; Finsen, Alexandra; Vinge, Leif Erik; Nymo, Ståle Haugset; Espeland, Torvald; Ranheim, Trine; Aukrust, Pål; Vaage, Ingvar Jarle; Auensen, Andreas; Gullestad, Lars; Ueland, Thor.
YKL-40 (Chitinase-3-Like Protein 1) Serum Levels in Aortic Stenosis. Circulation: Heart Failure 2020 ;Volum 13.(10) s. e006643-
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7 Banono, Nancy Saana.
Investigating the functional effects of single nucleotide variants (SNVs) in schizophrenia risk genes: using the zebrafish as the model organism. Neuronus IBRO Virtual Neuroscience Forum; 2020-12-09 - 2020-12-11
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8 Banono, Nancy Saana; Esguerra, Camila.
Pharmacological validation of the prepulse inhibition of startle response in larval zebrafish using a commercial automated system and software. Journal of Visualized Experiments 2020 ;Volum 161. s. -
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9 Banono, Nancy Saana; Gawel, Kinga Aurelia; De Witte, Linus; Esguerra, Camila.
Zebrafish larvae carrying a mutation in cacna1d display schizophrenia-like behaviours. Nordic EMBL Partnership Meeting 2020; 2020-09-22 - 2020-09-25
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10 Banono, Nancy Saana; Gawel, Kinga Aurelia; De Witte, Linus; Esguerra, Camila.
Zebrafish Larvae Carrying a Splice Variant Mutation in cacna1d: A New Model for Schizophrenia-Like Behaviours?. Molecular Neurobiology 2020 ;Volum 58. s. 877-894
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11 Barkovskaya, Anna; Seip, Kotryna; Prasmickaite, Lina; Mills, Ian Geoffrey; Moestue, Siver Andreas; Itkonen, Harri.
Inhibition of O-GlcNAc transferase activates tumor-suppressor gene expression in tamoxifen-resistant breast cancer cells. Scientific Reports 2020 ;Volum 10. s. 1-10
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12 Bonner, Erin R; Waszak, Sebastian Martin; Grotzer, Michael A; Mueller, Sabine; Nazarian, Javad.
Mechanisms of imipridones in targeting mitochondrial metabolism in cancer cells. Neuro-Oncology 2020
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13 Caglayan, Safak; Hashim, Adnan; Cieslar-Pobuda, Artur; Jensen, Vidar; Behringer, Sidney; Talug, Burcu; Chu, Dinh Toi; Pecquet, Christian; Rogne, Marie; Brech, Andreas; Brorson, Sverre Henning; Nagelhus, Erlend Arnulf; Hannibal, Luciana; Boschi, Antonella; Tasken, Kjetil; Staerk, Judith.
Optic Atrophy 1 Controls Human Neuronal Development by Preventing Aberrant Nuclear DNA Methylation. iScience 2020 ;Volum 23.(6) s. -
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14 Chu, Dinh Toi; Phuong, Thuy Nguyen Thi; Tien, Nguyen Le Bao; Tran, Dang Khoa; Thanh, Vo Van; Quang, Thuy Luu; Truong, Dang Tien; Pham, Van-Huy; Ngoc, Vo Truong Nhu; Chu-Dinh, Thien; Kushekhar, Kushi.
An update on the progress of isolation, culture, storage, and clinical application of human bone marrow mesenchymal stem/stromal cells. International Journal of Molecular Sciences 2020 ;Volum 21:708.(3) s. 1-27
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15 Cieslar-Pobuda, Artur; Ahrens, Theresa Dorothee; Caglayan, Safak; Behringer, Sidney; Hannibal, Luciana; Staerk, Judith.
DNMT3B deficiency alters mitochondrial biogenesis and α‐ketoglutarate levels in human embryonic stem cells. Stem Cells 2020 ;Volum 38.(11) s. 1409-1422
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16 Clarelli, Fabrizio; Palmer, Adam; Singh, Bhupender; Storflor, Merete; Lauksund, Silje; Cohen, Ted; Abel, Sören; Abel zur Wiesch, Pia.
Drug-target binding quantitatively predicts optimal antibiotic dose levels in quinolones. PLoS Computational Biology 2020
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17 Fagny, Maud; Kuijjer, Marieke Lydia; Stam, Maike; Joets, Johann; Turc, Olivier; Rozière, Julien; Pateyron, Stéphanie; Venon, Anthony; Vitte, Clémentine.
Identification of Key Tissue-Specific, Biological Processes by Integrating Enhancer Information in Maize Gene Regulatory Networks. Frontiers in Genetics 2020 ;Volum 11. s. -
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18 Gawel, Kinga Aurelia; Kukula-Koch, Wirginia; Nieoczym, Dorota; Stępnik, Katarzyna; van der Ent, Wietske; Banono, Nancy Saana; Tarabasz, Dominik; Turski, Waldemar A.; Esguerra, Camila.
The Influence of Palmatine Isolated from Berberis sibirica Radix on Pentylenetetrazole-Induced Seizures in Zebrafish. Cells 2020 ;Volum 9.(5)
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19 Gawel, Kinga Aurelia; Langlois, Melanie; Martins, Teresa G.; van der Ent, Wietske; Tiraboschi, Ettore; Jacmin, Maxime; Crawford, Alexander Dettmar; Esguerra, Camila V..
Seizing the moment: Zebrafish epilepsy models. Neuroscience and Biobehavioral Reviews 2020 ;Volum 116. s. 1-20
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20 Gawel, Kinga Aurelia; Turski, Waldemar A.; van der Ent, Wietske; Mathai, Benan John; Kirstein-Smardzewska, Karolina Joanna; Simonsen, Anne; Esguerra, Camila V..
Phenotypic Characterization of Larval Zebrafish (Danio rerio) with Partial Knockdown of the cacna1a Gene. Molecular Neurobiology 2020 ;Volum 57.(4)
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21 Gözen, Irep; Dommersnes, Paul Gunnar.
Biological lipid nanotubes and their potential role in evolution. The European Physical Journal Special Topics 2020 ;Volum 229.(17-18) s. 2843-2862
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22 Guldvik, Ingrid Jenny; Zuber, Verena; Braadland, Peder Rustøen; Grytli, Helene Hartvedt; Ramberg, Håkon Andre; Lilleby, Wolfgang; Thiede, Bernd; Zucknick, Manuela; Saatcioglu, Fahri; Gislefoss, Randi Elin; Kvåle, Rune; George, Anne; Grönberg, Henrik; Wiklund, Fredrik; Neal, David E.; Gnanapragasam, Vincent J.; Tasken, Kristin Austlid; Mills, Ian Geoffrey.
Identification and Validation of Leucine-rich alpha-2-glycoprotein 1 as a Noninvasive Biomarker for Improved Precision in Prostate Cancer Risk Stratification.. European Urology Open Science 2020 ;Volum 21. s. 51-61
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23 Hakonen, Anna H; Lehtonen, Johanna; Kivirikko, Sirpa; Keski‐Filppula, Riikka; Moilanen, Jukka; Kivisaari, Reetta; Almusa, Henrikki; Jakkula, Eveliina; Saarela, Janna; Avela, Kristiina; Aittomäki, Kristiina.
Recessive MYH3 variants cause “Contractures, pterygia, and variable skeletal fusions syndrome 1B” mimicking Escobar variant multiple pterygium syndrome. American Journal of Medical Genetics. Part A 2020 ;Volum 182.(11) s. 2605-2610
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24 Hannula-Jouppi, Katariina; Harjama, Liisa; Einarsdottir, Elisabet; Elomaa, Outi; Kettunen, Kaisa; Saarela, Janna; Soronen, Minna; Bouchard, Laura; Lappalainen, Katriina; Heikkilä, Hannele; Kivirikko, Sirpa; Seppänen, Mikko R J; Kere, Juha; Ranki, Annamari.
Nagashima-type palmoplantar keratosis in Finland caused by a SERPINB7 founder mutation. Journal of American Academy of Dermatology 2020 ;Volum 83.(2) s. 643-645
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25 Harjama, Liisa; Kettunen, Kaisa; Elomaa, Outi; Einarsdottir, Elisabet; Heikkilä, Hannele; Kivirikko, Sirpa; Lappalainen, Katriina; Saarela, Janna; Alby, Caroline; Ranki, Annamari; Kere, Juha; Hadj-Rabia, Smaïl; Hannula-Jouppi, Katariina.
Phenotypic Variability with SLURP1 Mutations and Diffuse Palmoplantar Keratoderma. Acta Dermato-Venereologica 2020 ;Volum 100.(4)
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26 Hautala, Timo; Chen, Jie; Tervonen, Laura; Partanen, Terhi; Winqvist, Satu; Lehtonen, Johanna; Saarela, Janna; Kraatari, Minna; Kuismin, Outi; Vuorinen, Tytti; Glumoff, Virpi; Åström, Pirjo; Huuskonen, Usko; Lorenzo, Lazaro; Casanova, Jean-Laurent; Zhang, Shen-Ying; Seppänen, Mikko R.J..
Herpes simplex virus 2 encephalitis in a patient heterozygous for a TLR3 mutation. Neurology: Genetics 2020 ;Volum 6.(6)
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27 Heim, Joel Benjamin.
Inhibitor development for Mpro, the main protease of SARS-CoV-2. MF9120BTS – Molecular Medicine (national course); 2020-11-20 - 2020-11-20
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28 Heim, Joel Benjamin; Kersten, Flore Marie Colette; Cunha, Eva; Luecke, Hartmut.
Survival in acidic environments – Structure and mechanism of bacterial urea channels. National Graduate School in Infection Biology and Antimicrobials (IBA) annual meeting 2020; 2020-10-26 - 2020-10-27
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29 Itkonen, Harri; Poulose, Ninu; Steele, Rebecca E.; Martin, Sara E.S.; Levine, Zebulon G.; Duveau, Damien Y.; Carelli, Ryan; Singh, Reema; Urbanucci, Alfonso; Loda, Massimo; Thomas, Craig J.; Mills, Ian Geoffrey; Walker, Suzanne.
Inhibition of O-GlcNAc transferase renders prostate cancer cells dependent on CDK9. Molecular Cancer Research 2020 ;Volum 18.(10) s. 1512-1521
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30 Kersten, Flore Marie C; Heim, Joel Benjamin.
Structural characterization of urea channels and their role in infectious diseases. Nordic EMBL Partnership Meeting 2020; 2020-09-22 - 2020-09-25
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31 Khalid, Khalisanni; Tan, Xuefei; Mohd Zaid, Hayyiratul Fatimah; Tao, Yang; Lye Chew, Chien; Chu, Dinh Toi; Lam, Man Kee; Ho, Yeek-Chia; Lim, Jun Wei; Chin Wei, Lai.
Advanced in developmental organic and inorganic nanomaterial: a review. Bioengineered 2020 ;Volum 11.(1) s. 328-355
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32 Khan, Aziz; Riudavets Puig, Rafael; Boddie, Paul; Mathelier, Anthony.
BiasAway: command-line and web server to generate nucleotide composition-matched DNA background sequences.. Bioinformatics 2020
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33 Köksal, Elif; Liese, Susanne; Xue, Lin; Ryskulov, Ruslan; Viitala, Lauri; Carlson, Andreas; Gözen, Irep.
Rapid Growth and Fusion of Protocells in Surface‐Adhered Membrane Networks. Small 2020 ;Volum 16.(38)
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34 Kuijjer, Marieke Lydia.
Predicting Cancer Evolution Using Cell State Dynamics. Cancer Research 2020 ;Volum 80.(15)
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35 Kuijjer, Marieke Lydia; Fagny, Maud; Marin, Alessandro; Quackenbush, John; Glass, Kimberly.
PUMA: PANDA Using MicroRNA Associations. Bioinformatics 2020
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36 Kuijjer, Marieke Lydia; Paulson, Joseph N.; Quackenbush, John.
Expression analysis. I: Bioinformatics. John Wiley & Sons 2020 ISBN 978-1-119-33558-0. s. 279-314
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37 Lindner, Paula Maria; Christensen, Søren Brøgger; Nissen, Poul; Møller, Jesper Vuust; Engedal, Nikolai.
Cell death induced by the ER stressor thapsigargin involves death receptor 5, a non-autophagic function of MAP1LC3B, and distinct contributions from unfolded protein response components. Cell Communication and Signaling 2020 ;Volum 18.(1) s. 1-23
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38 Lopes-ramos, Camila; Chen, Cho-Yi; Kuijjer, Marieke Lydia; Paulson, Joseph N.; Sonawane, Abhijeet; Fagny, Maud; Platig, John; Glass, Kimberly; Quackenbush, John; DeMeo, Dawn L..
Sex Differences in Gene Expression and Regulatory Networks across 29 Human Tissues. Cell reports 2020 ;Volum 31.(12)
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39 Mahmutovic, Anel; Abel zur Wiesch, Pia; Abel, Sören.
Selection or drift: the population biology underlying transposon insertion sequencing experiments.. Computational and Structural Biotechnology Journal 2020 ;Volum 18. s. 791-804
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40 Martîn, Ruth Martîn; Stonyte, Vilte; Lopez Aviles, Sandra.
Protein phosphatases in G1 regulation. International Journal of Molecular Sciences 2020 ;Volum 21:395.(2) s. 1-15
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41 Meås, Hany Zakaria; Haug, Markus; Beckwith, Marianne Sandvold; Louet, Claire; Ryan, Liv; Hu, Zhenyi; Landskron, Johannes; Nordbø, Svein Arne; Tasken, Kjetil; Yin, Hang; Damås, Jan Kristian; Flo, Trude Helen.
Sensing of HIV-1 by TLR8 activates human T cells and reverses latency. Nature Communications 2020 ;Volum 11:147. s. 1-16
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42 Mohammadzadeh, Naiyereh; Melleby, Arne Olav; Palmero, Sheryl; Sjaastad, Ivar; Chakravarti, Shukti; Engebretsen, Kristin V Thunheim; Christensen, Geir Arve; Lunde, Ida Gjervold; Tønnessen, Theis.
Moderate Loss of the Extracellular Matrix Proteoglycan Lumican Attenuates Cardiac Fibrosis in Mice Subjected to Pressure Overload. Cardiology 2020 ;Volum 145.(3) s. 187-198
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43 Partanen, Terhi; Chen, Jie; Lehtonen, Johanna; Kuismin, Outi; Rusanen, Harri; Vapalahti, Olli; Vaheri, Antti; Anttila, Veli-Jukka; Bode, Michaela; Hautala, Nina; Vuorinen, Tytti; Glumoff, Virpi; Kraatari, Minna; Åström, Pirjo; Saarela, Janna; Kauma, Heikki; Lorenzo, Lazaro; Casanova, Jean-Laurent; Zhang, Shen-Ying; Seppänen, Mikko; Hautala, Timo.
Heterozygous TLR3 Mutation in Patients with Hantavirus Encephalitis. Journal of Clinical Immunology 2020 ;Volum 40.(8) s. -1156
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44 Perdreau-Dahl, Harmonie; Progida, Cinzia; Barfeld, Stefan Jörg; Guldsten, Hanne; Thiede, Bernd; Arntzen, Magnus Øverlie; Bakke, Oddmund; Mills, Ian Geoffrey; Krauss, Stefan; Morth, Jens Preben.
Sjögren syndrome/scleroderma autoantigen 1 is a direct Tankyrase binding partner in cancer cells. Communications Biology 2020 ;Volum 3.(1) s. -
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45 Pladsen, Arne Valebjørg; Nilsen, Gro; Rueda, Oscar M.; Aure, Miriam Ragle; Borgan, Ørnulf; Liestøl, Knut; Vitelli, Valeria; Frigessi Di Rattalma, Arnoldo; Langerød, Anita; Mathelier, Anthony; Engebråten, Olav; Kristensen, Vessela N.; Wedge, David C.; Van Loo, Peter; Caldas, Carlos; Børresen-Dale, Anne-Lise; Russnes, Hege Elisabeth Giercksky; Lingjærde, Ole Christian.
DNA copy number motifs are strong and independent predictors of survival in breast cancer. Communications Biology 2020 ;Volum 3. s. -
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46 Põldsalu, Inga; Rohtlaid, Kätlin; Plesse, Cedric; Vidal, Frédéric; Nguyen, Ngoc Tuan; Peikolainen, Anna-Liisa; Tamm, Tarmo; Kiefer, Rudolf.
Printed PEDOT: PSS trilayer: Mechanism evaluation and application in energy storage. Materials 2020 ;Volum 13.(2) s. 1-13
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47 Qiang, Jipeng; Ding, Wei; Kuijjer, Marieke Lydia; Quackenbush, John; Chen, Ping.
Clustering Sparse Data with Feature Correlation with Application to Discover Subtypes in Cancer. IEEE Access 2020 ;Volum 8. s. 67775-67789
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48 Ramonet Jimenez, Jose David; Dietz, Gunnar P.H..
Novel cell-based assay for identification of LRRK2 inhibitors using its aberrant regulation of a pluripotency gene. SLAS Discovery 2020 ;Volum 25.(1) s. 104-112
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49 ; Hovet, Oda.
Molecular Dynamics Studies on the Essential Mitotic Protein Kinase – Aurora B. https://www.duo.uio.no/handle/10852/79628: Reprosentralen, University of Oslo 2020 77 s.
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50 Song, You; Hultman, Maria Thérése; Moe, Jannicke; Petersen, Karina; Rundberget, Jan Thomas; Xie, Li; Cao, Yang; Esguerra, Camila Vicencio; De Bin, Riccardo; Lee, YeonKyeong; Solhaug, Knut Asbjørn; Kamstra, Jorke H; Legler, Juliette; Iguchi, Taisen; Lillicrap, Adam David; Andersen, Sjur; Villeneuve, Daniel L.; Tollefsen, Knut-Erik.
The RiskAOP project - Quantitative Adverse Outcome Pathway assisted risk assessment of mitochondrial toxicants. SETAC North America 41th Annual Meeting (SETAC SciCon2); 2020-11-15 - 2020-11-19
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