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2023
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1. |
Bjorbækmo, Marit Frederikke Markussen; Brodie, Juliet; Krabberød, Anders Kristian; Logares, Ramiro; Fuss, Janina; Fredriksen, Stein; Wold-Dobbe, Anders; Shalchian-Tabrizi, Kamran; Bass, David. 18S rDNA gene metabarcoding of microeukaryotes and epi-endophytes in the holobiome of seven species of large brown algae. Journal of Phycology 2023 ;Volum 59.(5) s. 859-878 NIVA UiO
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2021
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2. |
Andresen, Ina J.; Orr, Russell John Scott; Shalchian-Tabrizi, Kamran; Bråte, Jon. Compartmentalization of mRNAs in the giant, unicellular green alga Acetabularia acetabulum. Algal Research 2021 ;Volum 59. s. - UiO FHI
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3. |
Andresen, Ina Jungersen; Orr, Russell John Scott; Krabberød, Anders Kristian; Shalchian-Tabrizi, Kamran; Bråte, Jon. Genome sequencing and de novo assembly of the giant unicellular alga Acetabularia acetabulum using droplet MDA. Scientific Reports 2021 ;Volum 11. s. - UiO FHI
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4. |
Gulbrandsen, Øyvind Sætren; Andresen, Ina Jungersen; Krabberød, Anders Kristian; Bråte, Jon; Shalchian-Tabrizi, Kamran. Phylogenomic analysis restructures the Ulvophyceae. Journal of Phycology 2021 ;Volum 57.(4) s. 1223-1233 UiO NMBU FHI
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2019
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5. |
Spilde, Ingrid; Bråte, Jon; Shalchian-Tabrizi, Kamran. Knøttlite mysterium: Hva er egentlig forskjellen på deg og en encellet skapning?. Forskning.no [Fagblad] 2019-02-04 UiO
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2018
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6. |
Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Haraldsen, Arthur Alexander Blørstad; Tarver, James E.; Suga, Hiroshi; Donoghue, Philip C.J.; Peterson, Kevin J.; Ruiz-Trillo, Iñaki; Grini, Paul Eivind; Shalchian-Tabrizi, Kamran. Unicellular origin of the animal microRNA machinery. Current Biology 2018 ;Volum 28.(20) s. 3288-3295.e5 UiO OUS
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7. |
Orr, Russell John Scott; Zhao, Sen; Klaveness, Dag; Yabuki, Akinori; Ikeda, Keiji; Watanabe, Makoto M.; Shalchian-Tabrizi, Kamran. Correction to: Enigmatic Diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution. BMC Evolutionary Biology 2018 ;Volum 18.(1) s. - UiO OUS
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8. |
Orr, Russell; Zhao, Sen; Klaveness, Dag; Yabuki, Akinori; Ikeda, Keiji; Makoto, Watanabe M.; Shalchian-Tabrizi, Kamran. Enigmatic diphyllatea eukaryotes: culturing and targeted PacBio RS amplicon sequencing reveals a higher order taxonomic diversity and global distribution. BMC Evolutionary Biology 2018 ;Volum 18.(115) s. 1-13 UiO OUS
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2017
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9. |
Freeman, Mark A.; Fuss, Janina; Kristmundsson, Árni; Bjorbækmo, Marit Fredrikke Markussen; Mangot, Jean-Francois; del Campo, Javier; Keeling, Patrick J; Shalchian-Tabrizi, Kamran; Bass, David. X-Cells Are Globally Distributed, Genetically Divergent Fish Parasites Related to Perkinsids and Dinoflagellates. Current Biology 2017 ;Volum 27.(11) s. 1645-1651 UiO
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10. |
Krabberød, Anders Kristian; Bjorbækmo, Marit Markussen; Shalchian-Tabrizi, Kamran; Logares, Ramiro. Exploring the oceanic microeukaryotic interactome with metaomics approaches. Aquatic Microbial Ecology 2017 ;Volum 79.(1) s. 1-12 UiO
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11. |
Krabberød, Anders Kristian; Orr, Russell; Bråte, Jon; Kristensen, Tom; Bjørklund, Kjell Rasmus; Shalchian-Tabrizi, Kamran. Single cell transcriptomics, mega-phylogeny and the genetic basis of morphological innovations in Rhizaria. Molecular Biology and Evolution (MBE) 2017 UiO
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12. |
Orr, Russell; Rombauts, S; Van De Peer, Yves; Shalchian-Tabrizi, Kamran. Erratum to "Draft Genome Sequences of Two Unclassified Bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, Isolated from Environmental Samples" [Genome Announc., 2017, 5 (34):e00894-17.] Doi: 10.1128/genomeA.00894-17.. Microbiology Resource Announcements (MRA) 2017 ;Volum 5.(41) UiO
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13. |
Orr, Russell; Rombauts, Stephane; Van de Peer, Yves; Shalchian-Tabrizi, Kamran. Draft genome sequences of two unclassified bacteria, Hydrogenophaga sp. strains IBVHS1 and IBVHS2, isolated from environmental samples. Microbiology Resource Announcements (MRA) 2017 ;Volum 5.(34) UiO
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14. |
Orr, Russell; Rombauts, Stephane; Van de Peer, Yves; Shalchian-Tabrizi, Kamran. Draft genome sequences of two unclassified bacteria, Sphingomonas sp. strains IBVSS1 and IBVSS2, isolated from environmental samples. Microbiology Resource Announcements (MRA) 2017 ;Volum 5:e00894-17.(34) s. 1-3 UiO
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15. |
Orr, Russell; Rombauts, Stephane; Van de Peer, Yves; Shalchian-Tabrizi, Kamran. Draft genome sequences of two unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, isolated from environmental samples. Microbiology Resource Announcements (MRA) 2017 ;Volum 5.(33) s. 1-3 UiO
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16. |
Orr, Russell; Rombauts, Stephane; Van de Peer, Yves; Shalchian-Tabrizi, Kamran. Erratum: "Draft genome sequences of two unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, isolated from environmental samples" [Genome Announc, 5, 33, (2017), (e00787-17)] DOI:10.1128/genomeA.00787-17. Microbiology Resource Announcements (MRA) 2017 ;Volum 5.(41:e01152-17) s. 1-1 UiO
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17. |
Orr, Russell; Shalchian-Tabrizi, Kamran; Van de Peer, Yves; Rombauts, S. Draft Genome Sequences of Two Unclassified Bacteria, Sphingomonas sp. Strains IBVSS1 and IBVSS2, Isolated from Environmental Samples. Microbiology Resource Announcements (MRA) 2017 ;Volum 5.(34) UiO
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18. |
Orr, Russell; Shalchian-Tabrizi, Kamran; Van de Peer, Yves; Rombauts, S. Draft genome Sequences of two Unclassified Chitinophagaceae bacteria, IBVUCB1 and IBVUCB2, Isolated from Environmental Samples. Microbiology Resource Announcements (MRA) 2017 UiO
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2016
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19. |
Evenstad, Andreas; Lieblein Røsæg, Line; Andresen, Ina Jungersen; Shalchian-Tabrizi, Kamran; Bråte, Jon. Evolution of non-coding RNAs in ctenophores. EuroEvoDevo 2016; 2016-07-26 - 2016-07-29 UiO
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20. |
Forster, Dominik; Dunthorn, Micah; Mahé, Frédéric; Dolan, John R.; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Edvardsen, Bente; Egge, Elianne Dunthorn; Eikrem, Wenche; Gobet, Angélique; Kooistra, Wiebe H.C.F.; Logares, Ramiro; Massana, Ramon; Montresor, Marina; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C.; Romac, Sarah; Shalchian-Tabrizi, Kamran; Simon, Nathalie; Richards, Thomas A.; Santini, Sébastien; Sarno, Diana; Siano, Raffaele; Vaulot, Daniel; Wincker, Patrick; Zingone, Adriana; De Vargas, Colomban; Stoeck, Thorsten. Benthic protists: The under-charted majority. FEMS Microbiology Ecology 2016 ;Volum 92.(8) s. 1-11 UiO
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21. |
Haraldsen, Arthur Alexander Blørstad; Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Grini, Paul Eivind; Shalchian-Tabrizi, Kamran. Pre-metazoan origin of animal microRNAs. European Society of Evolutionary Developmental Biology; 2016-07-26 - 2016-07-29 UiO
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22. |
Lieblein Røsæg, Line; Evenstad, Andreas; Andresen, Ina Jungersen; Bråte, Jon; Shalchian-Tabrizi, Kamran. Postembryonic development of Mnemiopsis leidyi inferred from gene expression data. EuroEvoDevo 2016; 2016-07-26 - 2016-07-29 UiO
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23. |
Orr, Russell; Zhao, Sen; Yabuki, Akinori; Shalchian-Tabrizi, Kamran. PacBio sequencing reveals the diversity and ecology of a deeply diverging eukaryote lineage. EMBO | EMBL Symposium: A New Age of Discovery for Aquatic Microeukaryotes; 2016-01-26 - 2016-01-29 UiO
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2015
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24. |
Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad; Shalchian-Tabrizi, Kamran. Expanding our knowledge about parasites using PATHOS-DB (The PArasiTe–HOSt-DataBase). VII European Congress of Protistology; 2015-09-05 - 2015-09-10 UiO
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25. |
Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad; Shalchian-Tabrizi, Kamran. HIDDEN PROTIST PARASITES: HOW CAN THEY BE DETECTED?. 2015 Aquatic Sciences Meeting - Aquatic Sciences: Global And Regional Perspectives — North Meets South;; 2015-02-22 - 2015-02-27 UiO
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26. |
Bråte, Jon; Adamski, Marcin; Neumann, Ralf Stefan; Shalchian-Tabrizi, Kamran; Adamska, Maja. Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum. Proceedings of the Royal Society of London. Biological Sciences 2015 ;Volum 282.(1821) s. 1-9 UiB UiO
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27. |
Fuss, Janina; Grønneberg, Estelle; Gylt, Torbjørn; Bjorbækmo, Marit Markussen; Mangot, Jean-Francois; Shalchian-Tabrizi, Kamran; Klaveness, Dag. Pee, poo and parasitic protists - what is living inside the fish we eat?. VII European Congress of Protistology; 2015-09-05 - 2015-09-10 UiO
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28. |
Fuss, Janina; Mangot, Jean-Francois; Bjorbækmo, Marit Markussen; Freeman, Mark A.; Bass, David; Shalchian-Tabrizi, Kamran; Klaveness, Dag. THE ENIGMATIC BASAL ALVEOLATE PARASITE X-CELL: CAN MULTIPLE GENOMIC APPROACHES REVEAL MORE?. 2015 Aquatic Sciences Meeting - Aquatic Sciences: Global And Regional Perspectives — North Meets South; 2015-02-22 - 2015-02-27 UiO
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29. |
Haraldsen, Arthur Alexander Blørstad; Bjorbækmo, Marit Markussen; Mangot, Jean-Francois; Fuss, Janina; Shalchian-Tabrizi, Kamran; Hansen, Haakon; Klaveness, Dag. Protist diversity in a marine and lacustrine system: Patterns across a salinity gradient. 2015 Aquatic Sciences Meeting - Aquatic Sciences: Global And Regional Perspectives — North Meets South; 2015-02-22 - 2015-02-27 UiO VETINST
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30. |
Kumar, Surendra; Krabberød, Anders Kristian; Neumann, Ralf Stefan; Michalickova, Katerina; Zhao, Sen; Zhang, Xiaoli; Shalchian-Tabrizi, Kamran. BIR pipeline for preparation of phylogenomic data. Evolutionary Bioinformatics 2015 ;Volum 11. s. 79-83 OUS UiO
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31. |
Massana, Ramon; Gobet, Angelique; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Chambouvet, Aurélie; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Dolan, John R.; Dunthorn, Micah; Edvardsen, Bente; Forn, Irene; Forster, Dominik; Guillou, Laure; Jaillon, Olivier; Kooistra, Wiebe H. C. F.; Logares, Ramiro; Mahé, Frédéric; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C.; Probert, Ian; Romac, Sarah; Richards, Thomas; Santini, Sebastien; Shalchian-Tabrizi, Kamran; Siano, Raffaele; Simon, Nathalie; Stoeck, Thorsten; Vaulot, Daniel; Zingone, Adriana; de Vargas, Colomban. Marine protist diversity in European coastal watersand sediments as revealed by high-throughputsequencing. Environmental Microbiology 2015 ;Volum 17.(10) s. 4035-4049 UiO
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2014
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32. |
Enevoldsen, Emily; Liow, Lee Hsiang; Voje, Kjetil L.; Orr, Russell; Shalchian-Tabrizi, Kamran; Krabberød, Anders Kristian. Macroevolution through molecular and morphological lenses: a history of microporellids. CEES Annual Student Conference; 2014-10-21 - 2014-10-22 UiO
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33. |
Logares, Ramiro; Audic, Stéphane; Bass, David; Bittner, Lucie; Boutte, Christophe; Christen, Richard; Claverie, Jean-Michel; Decelle, Johan; Dolan, John R.; Dunthorn, Micah; Edvardsen, Bente; Gobet, Angelique; Kooistra, Wiebe H.C.F.; Mahé, Frédéric; Not, Fabrice; Ogata, Hiroyuki; Pawlowski, Jan; Pernice, Massimo C.; Romac, Sarah; Shalchian-Tabrizi, Kamran; Simon, Nathalie; Stoeck, Thorsten; Santini, Sebastien; Siano, Raffaele; Wincker, Patrick; Zingone, Adriana; Richards, Thomas A.; de Vargas, Colomban; Massana, Ramon. Patterns of Rare and Abundant Marine Microbial Eukaryotes. Current Biology 2014 ;Volum 24.(8) s. 813-821 UiO
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34. |
Neumann, Ralf Stefan; Kumar, Surendra; Haverkamp, Thomas Hendricus Augustus; Shalchian-Tabrizi, Kamran. BLASTGrabber: A bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data. BMC Bioinformatics 2014 ;Volum 15.(128) s. - UiO AHUS
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35. |
Neumann, Ralf Stefan; Kumar, Surendra; Shalchian-Tabrizi, Kamran. BLAST output visualization in the new sequencing era. Briefings in Bioinformatics 2014 ;Volum 15.(4) s. 484-503 UiO
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2013
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36. |
Demko, Viktor; Johansen, Wenche; Perroud, Pierre-francois; Liang, Zhe; Shalchian-Tabrizi, Kamran; Zhao, Sen; Olsen, Odd-Arne; Quatrano, Ralph S.; Wilson, Robert Charles. The evolutionary history of eukaryotic calpains displays multiple variants of regulatory mechanisms for CysPc activity. Biology of Calpains in Health and Disease; 2013-07-21 - 2013-07-26 HINN UiO NMBU
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37. |
Liang, Zhe; Demko, Viktor; Wilson, Robert Charles; Johnson, Kenneth; Ahmad, Rafi; Perroud, Pierre-Francois; Quatrano, Ralph; Zhao, Sen; Shalchian-Tabrizi, Kamran; Otegui, Marisa; Olsen, Odd-Arne; Johansen, Wenche. The catalytic domain CysPc of the DEK1 calpain is functionally conserved in land plants. The Plant Journal 2013 ;Volum 75.(5) s. 742-754 UiO UiT HINN NMBU
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38. |
Zhao, Sen; Shalchian-Tabrizi, Kamran; Klaveness, Dag. Sulcozoa revealed as a paraphyletic group in mitochondrial phylogenomics. Molecular Phylogenetics and Evolution 2013 ;Volum 69.(3) s. 462-468 UiO
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2012
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39. |
Bråte, Jon; Krabberød, Anders Kristian; Dolven, Jane Karine Lønne; Ose, Randi Frida; Kristensen, Tom; Bjørklund, Kjell Rasmus; Shalchian-Tabrizi, Kamran. Radiolaria Associated with Large Diversity of Marine Alveolates. Protist 2012 ;Volum 163.(5) s. 767-777 UiO
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40. |
Demko, Viktor; Ako, Ako Eugene; Perroud, Pierre-Francois; Liang, Zhe; Johansen, Wenche; Wilson, Robert; Shalchian-Tabrizi, Kamran; Thiede, Bernd; Quatrano, Ralph; Olsen, Odd-Arne. Searching for cellular targets of the plant calpain DEK1. Moss 2012; 2012-06-16 - 2012-06-18 HINN UiO NMBU
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41. |
Espelund, Mari; Minge, Marianne Aastebøl; Gabrielsen, Tove M; Nederbragt, Alexander Johan; Shalchian-Tabrizi, Kamran; Otis, Christian; Turmel, Monique; Lemieux, Claude; Jakobsen, Kjetill Sigurd. Genome Fragmentation Is Not Confined to the Peridinin Plastid in Dinoflagellates. PLOS ONE 2012 ;Volum 7.(6) s. - UiO
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42. |
Liang, Zhe; Demko, Viktor; Zhao, Sen; Wilson, Robert; Shalchian-Tabrizi, Kamran; Johansen, Wenche; Olsen, Odd-Arne. The DEK1 protein evolved from an ancient form of membrane bound calpain and is highly conserved in land plants. PlantBio 2012; 2012-10-17 - 2012-10-18 HINN UiO NMBU
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43. |
Liang, Zhe. The DEK1 protein evolved from an ancient form of membrane bound calpain and is highly conserved in land plants. : Norwegian University of Life Sciences 2012 (ISBN 978-82-575-1083-1) 172 s. HINN UiO NMBU
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44. |
Suga, Hiroshi; Dacre, Michael; de Mendoza, Alex; Shalchian-Tabrizi, Kamran; Manning, G; Ruiz-Trillo, Iñaki. Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases. Science Signaling 2012 ;Volum 5.(222) s. - UiO
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45. |
Tidemann, Grethe; Shalchian-Tabrizi, Kamran; Vrålstad, Trude; Carlsen, Tor. Hvordan skape et toppforskningsmiljø på under fem år. Uniforum [Avis] 2012-03-20 UiO VETINST
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46. |
Torruella, Guifré; Derelle, Romain; Paps, Jordi; Lang, B. Franz; Roger, Andrew J.; Shalchian-Tabrizi, Kamran; Ruiz-Trillo, Iñaki. Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains. Molecular Biology and Evolution (MBE) 2012 ;Volum 29.(2) s. 531-544 UiO
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47. |
Zhao, Sen; Burki, Fabien; Bråte, Jon; Keeling, Patrick J; Klaveness, Dag; Shalchian-Tabrizi, Kamran. Collodictyon - An Ancient Lineage in the Tree of Eukaryotes. Molecular Biology and Evolution (MBE) 2012 ;Volum 29.(6) s. 1557-1568 UiO
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48. |
Zhao, Sen; Liang, Zhe; Demko, Viktor; Wilson, Robert; Johansen, Wenche; Olsen, Odd-Arne; Shalchian-Tabrizi, Kamran. Massive expansion of the calpain gene family in unicellular eukaryotes. BMC Evolutionary Biology 2012 ;Volum 12.(193) s. - NMBU UiO HINN
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2011
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49. |
Demko, Viktor; Perroud, Pierre-Francois; Johansen, Wenche; Wilson, Robert Charles; Liang, Zhe; Shalchian-Tabrizi, Kamran; Olsen, Odd-Arne. The DEK1 and CRINKLY4 proteins play a fundamental role in the development of land plants - from Arabidopsis back to the moss Physcomitrella patens. 10th Norwegian Arabidopsis Meeting; 2011-12-01 - 2011-12-01 HINN UiO NMBU
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50. |
Gabrielsen, Tove M; Minge, Marianne Aastebøl; Espelund, Mari; Tooming-Klunderud, Ave; Patil, Viswanath; Nederbragt, Alexander Johan; Otis, Christian; Turmel, Monique; Shalchian-Tabrizi, Kamran; Lemieux, Claude; Jakobsen, Kjetill Sigurd. Genome Evolution of a Tertiary Dinoflagellate Plastid. PLOS ONE 2011 ;Volum 6.(4) s. e19132- UiO
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