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Showing results 1-25 of 25

2020
1 Puig, Rafael Riudavets; Holmås, Stian; Mironov, Vladimir; Kuiper, Martin.
Network Building with the Cytoscape BioGateway App Explained in Five Use Cases. Current Protocols in Bioinformatics 2020 ;Volume 72.(1)
NTNU Untitled
 
2019
2 Holmås, Stian; Mironov, Vladimir; Kuiper, Martin.
Network building in Cytoscape using the BioGateway App. SWAT4(HC)LS 2019: Semantic Web Applications and Tools for Healthcare and Life Sciences; 2019-12-09 - 2019-12-12
NTNU Untitled
 
3 Holmås, Stian; Riudavets Puig, Rafael; Acencio, Marcio Luis; Mironov, Vladimir; Kuiper, Martin.
The Cytoscape BioGateway App: explorative network building from an RDF store. Bioinformatics 2019 p. -
NTNU Untitled
 
2017
4 Nordgård, Anna Synnøve Røstad; Bergland, Wenche Hennie; Vadstein, Olav; Mironov, Vladimir; Bakke, Rune; Østgaard, Kjetill; Bakke, Ingrid.
Anaerobic digestion of pig manure supernatant at high ammonia concentrations characterized by high abundances of Methanosaeta and non-euryarchaeotal archaea. Scientific Reports 2017 ;Volume 7:15077. p. 1-14
NTNU USN Untitled
 
2016
5 Bakke, Ingrid; Nordgård, Anna Synnøve Røstad; Bergland, Wenche Hennie; Vadstein, Olav; Mironov, Vladimir; Østgaard, Kjetill; Bakke, Rune.
Microbial community dynamics in anaerobic digestion at high ammonia concentrations. International Symposium on Microbial Ecology ISME 16; 2016-08-21 - 2016-08-26
USN NTNU Untitled
 
2014
6 Blondé, Ward; Antezana, Erick; Mironov, Vladimir; Schulz, Stefan; Kuiper, Martin; De baets, Bernard.
Using the relation ontology Metarel for modelling Linked Data as multi-digraphs. Semantic Web Journal 2014 ;Volume 5.(2) p. 115-126
NTNU Untitled
 
7 Kuiper, Martin; Mironov, Vladimir; Venkatesan, Aravind; Tripathi, Sushil; Blondé, Ward; Sanz de Galdeano, Alejandro; Lægreid, Astrid.
The gene expression knowledge base. Virtual Physiological Human Conference 2014; 2014-09-09 - 2014-09-12
NTNU Untitled
 
8 Mironov, Vladimir; Kuiper, Martin; Ekseth, Ole Kristian.
OrthAgogue: An agile tool for the rapid prediction of orthology relations. Bioinformatics 2014 ;Volume 30.(5) p. 734-736
NTNU Untitled
 
9 Venkatesan, Aravind; Tripathi, Sushil; Sanz de Galdeano, Alejandro; Blondé, Ward; Lægreid, Astrid; Mironov, Vladimir; Kuiper, Martin.
Finding gene regulatory network candidates using the gene expression knowledge base. BMC Bioinformatics 2014 ;Volume 15.(1)
NTNU Untitled
 
2013
10 Antezana, Erick; Mironov, Vladimir; Kuiper, Martin.
The emergence of Semantic Systems Biology. New Biotechnology 2013 ;Volume 30.(3) p. 286-290
NTNU Untitled
 
11 Kuiper, Martin; Antezana, Erick; Mironov, Vladimir.
Cell Cycle Ontology (CCO).
NTNU Untitled
 
2012
12 Hollunder, Jens; Mironov, Vladimir; Antezana, Erick; Hoehndorf, Robert; Kuiper, Martin.
Profiling of Semantically Annotated Proteins. Semantic Web Applications and Tools for Life Sciences 2012; 2012-11-28 - 2012-11-30
NTNU Untitled
 
13 Kuiper, Martin; Venkatesan, Aravind; Antezana, Erick; Vercruysse, Steven; Mironov, Vladimir; Blondé, Ward.
Putting Semantics in Systems Biology. META 2012 ;Volume 2012.(3) p. 22-30
NTNU Untitled
 
14 Mironov, Vladimir; Seethappan, Nirmala; Blondé, Ward; Antezana, Erick; Splendiani, Andrea; Kuiper, Martin.
Gauging triple stores with actual biological data. BMC Bioinformatics 2012 ;Volume 13. p. -
NTNU Untitled
 
15 Venkatesan, Aravind; Antezana, Erick; Blondé, Ward; Vercruysse, Steven; Mironov, Vladimir; Kuiper, Martin.
Putting Semantics in Systems Biology. NTNU Bioinformatics Network Seminar 2012 Norwegian Bioinformatics Forum 2012; 2012-10-18 - 2012-10-19
NTNU Untitled
 
16 Venkatesan, Aravind; Mironov, Vladimir; Kuiper, Martin.
Towards an integrated knowledge system for capturing gene expression events. 3rd International Conference on Biomedical Ontology (ICBO 2012); 2012-07-21 - 2012-07-25
NTNU Untitled
 
2011
17 Antezana, Erick; Blondé, Ward; Venkatesan, Aravind; De baets, Bernard; Mironov, Vladimir; Kuiper, Martin.
Semantic SB: enablng integrative biology via SW technologies. WIMS: International Conferences on Web Intelligence, Mining and Semantics.; 2011-05-25 - 2011-05-27
NTNU Untitled
 
18 Blondé, Ward; Mironov, Vladimir; Venkatesan, Aravind; Antezana, Erick; De baets, Bernard; Kuiper, Martin.
Reasoning with bio-ontologies: using relational closure rules to enable practical querying. Bioinformatics 2011 ;Volume 27.(11) p. 1562-1568
NTNU Untitled
 
19 Mironov, Vladimir; Antezana, Erick; Egaña, Mikel; Blondé, Ward; De baets, Bernard; Kuiper, Martin; Stevens, Robert.
Flexibility and utility of the cell cycle ontology. Applied Ontology 2011 ;Volume 6.(3) p. 247-261
NTNU Untitled
 
20 Mironov, Vladimir; Venkatesan, Aravind; Kuiper, Martin.
RDF Foundry - a call for a community effort to harmonize triple store practices. BioHackathon 2011; 2011-08-20 - 2011-08-26
NTNU Untitled
 
21 Tripathi, Sushil; Venkatesan, Aravind; Egaña, Mikel; Zavareh, Zahra; Chawla, Konika; Mironov, Vladimir; Thommesen, Liv; Bruland, Torunn; Kuiper, Martin; Lægreid, Astrid.
Automated Assessment of High Throughput Hypotheses on Gene Regulatory Mechanisms Involved in the Gastrin Response. Bio-Ontologies 2011; 2011-07-15 - 2011-07-16
NTNU Untitled
 
22 Venkatesan, Aravind; Blondé, Ward; Antezana, Erick; Skillingstad, Mats Gløer Løkås; Marshall, Scott M; De baets, Bernard; Mironov, Vladimir; Kuiper, Martin.
The RDF Foundry: Call for an initiative to build enhanced RDF resources for biological data integration. WIMS: International Conferences on Web Intelligence, Mining and Semantics.; 2011-05-25 - 2011-05-27
NTNU Untitled
 
2010
23 Antezana, Erick; Venkatesan, Aravind; Mungall, Chris; Mironov, Vladimir; Kuiper, Martin.
ONTO-ToolKit: enabling bio-ontology engineering via Galaxy. BMC Bioinformatics 2010 ;Volume 11. Suppl. 12 p. -
NTNU Untitled
 
2009
24 Antezana, E; Kuiper, Martin; Mironov, Vladimir.
Biological knowledge management: the emerging role of the Semantic Web technologies. Briefings in Bioinformatics 2009 ;Volume 10.(4) p. 392-407
NTNU Untitled
 
25 Antezana, Erick; Blondé, Ward; Egaña, Mikel; Rutherford, Alistair; Stevens, Robert; De baets, Bernard; Mironov, Vladimir; Kuiper, Martin.
BioGateway: A Semantic Systems Biology Tool for the Life Sciences. BMC Bioinformatics 2009 ;Volume 10.(S11) Suppl. 10 p. -
NTNU Untitled