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2024
1 Mrsa, Ago; Nardini, Greta; Halvorsen, Trine Grønhaug; Thiede, Bernd; Reubsaet, Leon.
One-step functionalization of paper and simplified antibody immobilization for on-the-spot immunocapture from dried serum in liquid chromatography-tandem mass spectrometry based targeted protein determination. Journal of Mass Spectrometry 2024 ;Volum 59.(1)
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2023
2 Bogucka-Janczi, Katarzyna; Harms, Gregory; Coissieux, Marie-May; Bentires-Alj, Mohamed; Thiede, Bernd; Rajalingam, Krishnaraj.
ERK3/MAPK6 dictates CDC42/RAC1 activity and ARP2/3-dependent actin polymerization. eLIFE 2023 ;Volum 12. s. 1-40
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3 Johansen, Anette; Thiede, Bernd; Anonsen, Jan Haug; Nilsson, Göran Erik.
Surviving without oxygen involves major tissue specific changes in the proteome of crucian carp (Carassius carassius). PeerJ 2023 ;Volum 11. s. 1-28
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4 Juvkam, Inga Solgård; Zlygosteva, Olga; Sitarz, Mateusz; Thiede, Bernd; Sørensen, Brita Singers; Malinen, Eirik; Edin, Nina Frederike Jeppesen; Søland, Tine Merete; Galtung, Hilde.
Proton Compared to X-Irradiation Induces Different Protein Profiles in Oral Cancer Cells and Their Derived Extracellular Vesicles. International Journal of Molecular Sciences 2023 ;Volum 24.(23) s. 1-17
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5 Storås, Andrea; Magnø, Morten Schjerven; Fineide, Fredrik; Thiede, Bernd; Chen, Xiangjun; Strumke, Inga; Halvorsen, Pål; Utheim, Tor Paaske; Riegler, Michael Alexander.
Identifying Important Proteins in Meibomian Gland Dysfunction with Explainable Artificial Intelligence. IEEE International Symposium on Computer-Based Medical Systems 2023
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6 Meyer, Saskia; Blaas, Isaac; Bollineni, Ravi Chand; Delic-Sarac, Marina; Tran, Trung; Knetter, Cathrine; Dai, Kezheng; Madssen, Torfinn Støve; Vaage, John T.; Gustavsen, Alice; Yang, Weiwen; Nissen-Meyer, Lise Sofie Haug; Douvlataniotis, Dimitrios Karolos; Laos, Maarja; Nielsen, Morten Milek; Thiede, Bernd; Søraas, Arne Vasli Lund; Lund-Johansen, Fridtjof; Rustad, Even Holth; Olweus, Johanna.
Prevalent and immunodominant CD8 T cell epitopes are conserved in SARS-CoV-2 variants. Cell reports 2023 ;Volum 42.(1) s. -
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7 Storås, Andrea; Fineide, Fredrik; Magnø, Morten Schjerven; Thiede, Bernd; Chen, Xiangjun; Strumke, Inga; Halvorsen, Pål; Galtung, Hilde; Jensen, Janicke Cecilie Liaaen; Utheim, Tor Paaske; Riegler, Michael Alexander.
Using machine learning model explanations to identify proteins related to severity of meibomian gland dysfunction. Scientific Reports 2023 ;Volum 13.(1)
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2022
8 Berg, Henriette Engen; Halldórsso, Skarphéðinn; Bakketeig, Eris Aas; Thiede, Bernd; Sandberg, Cecilie; Lundanes, Elsa; Vik-Mo, Einar O.; Wilson, Steven Ray Haakon.
Micro‐pillar array columns (µPAC): An efficient tool for comparing tissue and cultured cells of glioblastoma. Journal of chromatography open 2022 ;Volum 2. s. -
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9 Berg, Henriette Engen.
Exploring miniaturized chromatography formats and sample preparation methods for shotgun proteomics in limited biological samples. Oslo: Department of Chemistry, Faculty of Mathematics and Natural Sciences, University of Oslo 2022 ;Volum 2022.Series of dissertations submitted to the Faculty of Mathematics and Natural Sciences, University of Oslo.(2522)
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10 Berge-Seidl, Sebastian; Nielsen, Nis Valentin; Alfonso, Armando A. Rodriguez; Etscheid, Michael; Kandanur, Sai Priya Sarma; Haug, Bengt Erik; Stensland, Maria; Thiede, Bernd; Karacan, Merve; Preising, Nico; Wiese, Sebastian; Ständker, Ludger; Declerck, Paul J.; Løset, Geir Åge; Kanse, Sandip.
Identification of a phage display-derived peptide interacting with the N-terminal region of factor VII activating protease (FSAP) enables characterization of zymogen activation. ACS Chemical Biology 2022 ;Volum 17.(9) s. 2631-2642
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11 Cui, Xueyan; Stavik, Benedicte; Thiede, Bernd; Sandset, Per Morten; Kanse, Sandip.
FSAP Protects against Histone-Mediated Increase in Endothelial Permeability In Vitro. International Journal of Molecular Sciences 2022 ;Volum 23.(22) s. -
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12 Dugarte, Maria Eugenia Chollet; Harrison, Sean; Baumgarten, Saphira Felicitas; de la Morena-Barrio, Maria Eugenia; Bravo-Pérez, Carlos; Mowinckel, Marie-Christine; Skarpen, Ellen; Thiede, Bernd; Corral, Javier; Sandset, Per Morten; Sullivan, Gareth John; Stavik, Benedicte.
Human iPSC-derived hepatic organoids – a model for blood coagulation research and therapy. Human Gene Therapy 2022
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13 Hynne, Håvard; Aqrawi, Lara A.; Jensen, Janicke Liaaen; Thiede, Bernd; Palm, Øyvind; Amdal, Cecilie Delphin; Westgaard, Kristine Løken; Herlofson, Bente Brokstad; Utheim, Tor Paaske; Galtung, Hilde.
Proteomic Profiling of Saliva and Tears in Radiated Head and Neck Cancer Patients as Compared to Primary Sjögren’s Syndrome Patients. International Journal of Molecular Sciences 2022 ;Volum 23.(7) s. -
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14 Kallas, Pawel; Valen, Håkon; Hulander, Mats; Gadegaard, Nikolaj; Stormonth-Darling, John; O'Reilly, Padraic; Thiede, Bernd; Andersson, Martin; Haugen, Håvard Jostein.
Protein-coated nanostructured surfaces affect the adhesion of Escherichia coli. Nanoscale 2022 ;Volum 14.(20) s. 7736-7746
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15 Kogler, Stian; Aizenshtadt, Aleksandra; Harrison, Sean; Skottvoll, Frøydis Sved; Berg, Henriette Engen; Abadpour, Shadab; Scholz, Hanne; Sullivan, Gareth John; Thiede, Bernd; Lundanes, Elsa; Bogen, Inger Lise; Krauss, Stefan Johannes Karl; Røberg-Larsen, Hanne; Wilson, Steven Ray Haakon.
"Organ-in-a-Column" Coupled On-line with Liquid Chromatography-Mass Spectrometry. Analytical Chemistry 2022 ;Volum 94.(50) s. 17677-17684
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16 Nguyen, Minh Thao; Halvorsen, Trine Grønhaug; Thiede, Bernd; Reubsaet, Leon.
Smart proteolysis samplers for pre-lab bottom-up protein analysis – Performance of on-paper digestion compared to conventional digestion. Separation Science Plus (SSC plus) 2022 ;Volum 5.(5) s. 171-183
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17 Reubsaet, Leon; Thiede, Bernd; Halvorsen, Trine Grønhaug.
Next generation VAMS®–Trypsin immobilization for instant proteolysis in bottom-up protein determination.. Advances in Sample Preparation 2022 ;Volum 3. s. -
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18 Semenova, Daria; Zabirnyk, Arsenii; Lobov, Arseniy; Boyarskaya, Nadezda; Kachanova, Olga; Uspensky, Vladimir; Zainullina, Bozhana; Denisov, Evgeny; Gerashchenko, Tatiana; Kvitting, John-Peder; Kaljusto, Mari-Liis; Thiede, Bernd; Kostareva, Anna; Stensløkken, Kåre-Olav; Vaage, Ingvar Jarle; Malashicheva, Anna.
Multi-omics of in vitro aortic valve calcification. Frontiers in Cardiovascular Medicine 2022 ;Volum 9. s. -
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2021
19 Andersen, Elisabeth; Dugarte, Maria Eugenia Chollet; Sletten, Marit; Stavik, Benedicte; Skarpen, Ellen; Backe, Paul Hoff; Thiede, Bernd; Glosli, Heidi; Henriksson, Carola Elisabeth.
Molecular Characterization of Two Homozygous Factor VII Variants Associated with Intracranial Bleeding. Thrombosis and Haemostasis 2021 ;Volum 121.(12) s. 1588-1598
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20 Bakketeig, Eris Aas; Olsen, Christine; Berg, Henriette Engen; Nyman, Tuula Anneli; Thiede, Bernd; Lundanes, Elsa; Reubsaet, Leon; Wilson, Steven Ray Haakon.
Optimization of concatenation of fractions in comprehensive two dimensional liquid chromatography bottom-up proteomics. 18. Norske symposium i massespektrometri; 2021-01-25 - 2021-01-25
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21 Bakketeig, Eris Aas.
The setup and optimization of a complete global proteomics two-dimensional liquid chromatography system, using Spider Fractionation. Oslo: Universitetet i Oslo, Det matematisk-naturvitenskapelige fakultet 2021 98 s.
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22 Hanson, Ingunn; Pitman, Kathinka Elinor; Thiede, Bernd; Cai, Yiqing; Edin, Nina Frederike Jeppesen.
Proteomic Analysis of Low Dose-Rate Primed Cells and Extracellular Exosomes. ERRS conference 2021; 2021-11-26 - 2021-11-30
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23 Johannsen, Christina; Koehler, Christian; Thiede, Bernd.
Comparison of LFQ and IPTL for Protein Identification and Relative Quantification. Molecules 2021 ;Volum 26.(17) s. -
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24 Malecki, Jedrzej Mieczyslaw; O'Donohue, Marie-Francoise; Kim, Yeji; Jakobsson, Magnus; Gessa, Luca; Pinto, Rita; Wu, Jie; Davydova, Erna; Moen, Anders; Olsen, Jesper V.; Thiede, Bernd; Gleizes, Pierre-Emmanuel; Leidel, Sebastian A.; Falnes, Pål.
Human METTL18 is a histidine-specific methyltransferase that targets RPL3 and affects ribosome biogenesis and function. Nucleic Acids Research (NAR) 2021 ;Volum 49.(6) s. 3185-3203
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25 Thiede, Bernd; Koehler, Christian.
An Approach for Triplex-IPTL. I: Quantitative Methods in Proteomics. Humana Press 2021 ISBN 978-1-0716-1023-7. s. 133-144
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2020
26 Berg, Henriette Engen; Halldórsson, Skarphéðinn; Thiede, Bernd; Vik-Mo, Einar O.; Lundanes, Elsa; Wilson, Steven Ray Haakon.
Micro pillar array columns for comprehensive proteomics. 24. Norske Symposium i Kromatografi; 2020-01-05 - 2020-01-07
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27 Dugarte, Maria Eugenia Chollet; andersen, elisabeth; de la Morena-Barrio, Maria Eugenia; Bravo-Perez, Carlos; Mowinckel, Marie-Christine; Myklebust, Christiane Fillion; Skarpen, Ellen; Thiede, Bernd; Stavik, Benedicte; Corral, Javier; Sullivan, Gareth John; Sandset, Per Morten.
Characterizing Coagulation FVII from iPSC-Hepatocytes-like Cells: Setting the Basis for Cell Therapy Development. Blood 2020 ;Volum 136. Suppl. 1
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28 Guldvik, Ingrid Jenny; Zuber, Verena; Braadland, Peder Rustøen; Grytli, Helene Hartvedt; Ramberg, Håkon Andre; Lilleby, Wolfgang; Thiede, Bernd; Zucknick, Manuela; Saatcioglu, Fahri; Gislefoss, Randi Elin; Kvåle, Rune; George, Anne; Grönberg, Henrik; Wiklund, Fredrik; Neal, David E.; Gnanapragasam, Vincent J.; Tasken, Kristin Austlid; Mills, Ian Geoffrey.
Identification and Validation of Leucine-rich alpha-2-glycoprotein 1 as a Noninvasive Biomarker for Improved Precision in Prostate Cancer Risk Stratification.. European Urology Open Science 2020 ;Volum 21. s. 51-61
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29 Hanson, Ingunn; Altanerova, Ursula; Thiede, Bernd; Edin, Nina Frederike J.
Radioprotector TGF-β3 is secreted in exosomes and activated by LDR priming. Årsmøte i NIRO 2020; 2020-01-17
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30 Hanson, Ingunn; Edin, Nina Frederike J; Thiede, Bernd; Altanerova, Ursula.
Communication of radioprotective efects by TGF-β3. Digital ERRS 2020; 2020-09-13 - 2020-09-17
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31 Kara, Emrah; Nielsen, Nis Valentin; Eggertsdottir, Bergrun; Thiede, Bernd; Kanse, Sandip; Løset, Geir Åge.
Design and characterization of a new pVII combinatorial phage display peptide library for protease substrate mining using Factor VII activating protease (FSAP) as model. ChemBioChem 2020 ;Volum 21.(13) s. 1875-1884
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32 Khan, Ayyad Ahmad Zartasht; Jackson, Catherine; Utheim, Tor Paaske; Reppe, Sjur; Sapkota, Dipak; Olstad, Ole Kristoffer; Thiede, Bernd; Eidet, Jon Roger.
Sericin-induced melanogenesis in cultured retinal pigment epithelial cells is associated with elevated levels of hydrogen peroxide and inflammatory proteins. Molecules 2020 ;Volum 25.(19) s. 1-20
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33 Krishnan, Aswini; Berthelet, Jean; Renaud, Emilie; Rosigkeit, Sebastian; Distler, Ute; Stawiski, Eric; Wang, Jing; Modrusan, Zora; Fiedler, Marc; Bienz, Mariann; Tenzer, Stefan; Schad, Arno; Roth, Wilfried; Thiede, Bernd; Seshagiri, Somasekar; Musholt, Thomas J.; Rajalingam, Krishnaraj.
Proteogenomics analysis unveils a TFG-RET gene fusion and druggable targets in papillary thyroid carcinomas. Nature Communications 2020 ;Volum 11.
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34 Mazagão Guerreiro, Eduarda; Øvstebø, Reidun; Thiede, Bernd; Costea, Daniela Elena; Søland, Tine Merete; Galtung, Hilde.
Cancer cell line-specific protein profiles in extracellular vesicles identified by proteomics. PLOS ONE 2020 ;Volum 15.(9) s. 1-20
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35 Perdreau-Dahl, Harmonie; Progida, Cinzia; Barfeld, Stefan Jörg; Guldsten, Hanne; Thiede, Bernd; Arntzen, Magnus Øverlie; Bakke, Oddmund; Mills, Ian Geoffrey; Krauss, Stefan; Morth, Jens Preben.
Sjögren syndrome/scleroderma autoantigen 1 is a direct Tankyrase binding partner in cancer cells. Communications Biology 2020 ;Volum 3.(1) s. -
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36 Solhaug, Anita; Torgersen, Maria Lyngaas; Holme, Jørn Andreas; Wiik-Nielsen, Jannicke; Thiede, Bernd; Eriksen, Gunnar Sundstøl.
The Fusarium mycotoxin, 2-Amino-14,16-dimethyloctadecan-3-ol (AOD) induces vacuolization in HepG2 cells. Toxicology 2020 s. 433-434
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2019
37 Abudu, Yakubu Princely; Pankiv, Serhiy; Mathai, Benan John; Lystad, Alf Håkon; Bindesbøll, Christian; Brenne, Hanne Britt; Ng, Matthew Yoke Wui; Thiede, Bernd; Yamamoto, Ai; Nthiga, Thaddaeus Mutugi; Lamark, Trond; Esguerra, Camila Vicencio; Johansen, Terje; Simonsen, Anne.
NIPSNAP1 and NIPSNAP2 act as “eat-me signal” for mitophagy. Developmental Cell 2019 ;Volum 49.(4) s. 509-525.e12
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38 Aqrawi, Lara Adnan; Galtung, Hilde; Guerreiro, Eduarda; Øvstebø, Reidun; Thiede, Bernd; Utheim, Tor Paaske; Chen, Xiangjun; Utheim, Øygunn Aass; Palm, Øyvind; Skarstein, Kathrine; Jensen, Janicke Liaaen.
Proteomic and histopathological characterisation of sicca subjects and primary Sjögren’s syndrome patients reveals promising tear, saliva and extracellular vesicle disease biomarkers. Arthritis Research & Therapy 2019 ;Volum 21. s. 1-14
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39 Byskov, Kristina; M. le Gall, Sylvain; Thiede, Bernd; Camerer, Eric; Kanse, Sandip.
Protease activated receptors (PAR)‐1 and ‐2 mediate cellular effects of factor VII activating protease (FSAP).. The FASEB Journal 2019 ;Volum 34. s. 1079-1090
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40 Itkonen, Harri; Urbanucci, Alfonso; Sara ES, Martin; Khan, Aziz; Mathelier, Anthony; Thiede, Bernd; Walker, Suzanne; Mills, Ian Geoffrey.
High OGT activity is essential for MYC-driven proliferation of prostate cancer cells. Theranostics 2019 ;Volum 9.(8) s. 2183-2197
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41 Koehler, Christian; Thiede, Bernd.
Predominant cleavage of proteins N-terminal to serines and threonines using scandium(III) triflate. JBIC Journal of Biological Inorganic Chemistry 2019 ;Volum 25. s. 61-66
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42 Riegel, Kristina; Schlöder, Janine; Sobczak, Marco; Jonuleit, Helmut; Thiede, Bernd; Schild, Hansjörg; Rajalingam, Krishnaraj.
RAF kinases are stabilized and required for dendritic cell differentiation and function. Cell Death and Differentiation 2019 ;Volum 27. s. 1300-1315
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43 Wagner, Fabienne; Kunz, Tobias C.; Chowdhury, Suvagata R.; Thiede, Bernd; Fraunholz, Martin; Eger, Debora; Kozjak-Pavlovic, Vera.
Armadillo repeat-containing protein 1 is a dual localization protein associated with mitochondrial intermembrane space bridging complex. PLOS ONE 2019 ;Volum 14.(10) s. 1-19
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2018
44 Aqrawi, Lara Adnan; Chen, Xiangjun; Jensen, Janicke Liaaen; Morthen, Mathias Kaurstad; Thiede, Bernd; Utheim, Øygunn Aass; Palm, Øyvind; Tashbayev, Behzod; Utheim, Tor Paaske; Galtung, Hilde.
Severity of clinical dry eye manifestations influences protein expression in tear fluid of patients with primary Sjögren's syndrome. PLOS ONE 2018 ;Volum 13:e0205762.(10) s. 1-14
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45 Berg, Henriette Engen; Skottvoll, Frøydis Sved; Bjørseth, Kamilla; Sæterdal, Kristina Erikstad; Brandtzaeg, Ole Kristian; Vehus, Tore; Hustoft, Hanne Kolsrud; Røberg-Larsen, Hanne; Thiede, Bernd; Lundanes, Elsa; Wilson, Steven Ray Haakon.
Development of nanoLC column technology for proteomic studies. Nordic Proteomics Conference; 2018-04-18 - 2018-04-20
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46 Bollineni, Ravi Chand; Koehler, Christian; Gislefoss, Randi Elin; Anonsen, Jan Haug; Thiede, Bernd.
Author Correction: Large-scale intact glycopeptide identification by Mascot database search. Scientific Reports 2018 ;Volum 8.
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47 Bollineni, Ravi Chand; Koehler, Christian; Gislefoss, Randi Elin; Anonsen, Jan Haug; Thiede, Bernd.
Large-scale intact glycopeptide identification by Mascot database search. Scientific Reports 2018 ;Volum 8.
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48 Buehler, Ulrike; Schulenburg, Katharina; Yurugi, Hajime; Solman, Maja; Abankwa, Daniel; Ulges, Alexander; Tenzer, Stefan; Bopp, Tobias; Thiede, Bernd; Zipp, Frauke; Rajalingam, Krishnaraj.
Targeting prohibitins at the cell surface prevents Th17-mediated autoimmunity. EMBO Journal 2018 ;Volum 37:e99429.(16) s. 1-14
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49 Dugarte, Maria Eugenia Chollet; Andersen, Elisabeth; Skarpen, Ellen; Myklebust, Christiane Filion; Koehler, Christian; Morth, Jens Preben; Chuansumrit, Ampaiwan; Pinotti, Mirko; Bernardi, Francesco; Thiede, Bernd; Sandset, Per Morten; Skretting, Grethe.
Factor VII deficiency: Unveiling the cellular and molecular mechanisms underlying Three model alterations of the enzyme catalytic domain. Biochimica et Biophysica Acta - Molecular Basis of Disease 2018 ;Volum 1864.(3) s. 660-667
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50 Dukic, Aleksandra; Gerbaud, Pascal; Guibourdenche, Jean; Thiede, Bernd; Tasken, Kjetil; Pidoux, Guillaume.
Ezrin-anchored PKA phosphorylates serine 369 and 373 on connexin 43 to enhance gap junction assembly, communication, and cell fusion. Biochemical Journal 2018 ;Volum 475.(2) s. 455-476
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