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| Showing results 1-42 of 42 |
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2023
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| 1. | Dussex, Nicolas; Tørresen, Ole Kristian; van der Valk, Tom; Le Moullec, Mathilde; Veiberg, Vebjørn; Tooming-Klunderud, Ave; Skage, Morten; Garmann-Aarhus, Benedicte; Wood, Jonathan; Rasmussen, Jacob Agerbo; Pedersen, Åshild Ønvik; Martin, Sarah Louise; Røed, Knut; Jakobsen, Kjetill Sigurd; Dalén, Love; Hansen, Brage Bremset; Martin, Michael David. Adaptation to the High-Arctic island environment despite long-term reduced genetic variation in Svalbard reindeer. iScience 2023 ;Volume 26.(10) p. - NTNU NINA UiO NPI NMBU |
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| 2. | Hepner, Sabrina; Kuleshov, Konstantin; Tooming-Klunderud, Ave; Alig, Nikolas; Gofton, Alexander; Casjens, Sherwood; Rollins, Robert E.; Dangel, Alexandra; Mourkas, Evangelos; Sheppard, Samuel K.; Wieser, Andreas; Hübner, Johannes; Sing, Andreas; Fingerle, Volker; Margos, Gabriele. A high fidelity approach to assembling the complex Borrelia genome. BMC Genomics 2023 ;Volume 24.(1) p. 1-19 UiO |
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2022
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| 3. | Potolitsyna, Evdokiia; Hazell Pickering, Sarah Jai; Tooming-Klunderud, Ave; Collas, Philippe; Briand, Nolwenn. De novo annotation of lncRNA HOTAIR transcripts by long-read RNA capture-seq reveals a differentiation-driven isoform switch. BMC Genomics 2022 ;Volume 23.(1) p. - UiO OUS |
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2020
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| 4. | Stenmark, Bianca; Harrison, Odile B.; Eriksson, Lorraine; Anton, Brian P.; Fomenkov, Alexey; Roberts, Richard J.; Tooming-Klunderud, Ave; Bratcher, Holly B.; Bray, James E.; Thulin-Hedberg, Sara; Maiden, Martin C.J.; Mölling, Paula. Complete genome and methylome analysis of Neisseria meningitidis associated with increased serogroup Y disease. Scientific Reports 2020 ;Volume 10.(1) p. 1-11 UiO |
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2018
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| 5. | Hoff, Siv Nam Khang; Baalsrud, Helle Tessand; Tooming-Klunderud, Ave; Skage, Morten; Richmond, Todd; Obernosterer, Gregor; Shirzadi, Reza; Tørresen, Ole K.; Jakobsen, Kjetill Sigurd; Jentoft, Sissel. Long‐read sequence capture of the haemoglobin gene clusters across codfish species. Molecular Ecology Resources 2018 ;Volume 19.(1) p. 245-259 UiO |
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| 6. | Lie, Kai Kristoffer; Tørresen, Ole K.; Solbakken, Monica Hongrø; Rønnestad, Ivar; Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Jentoft, Sissel; Sæle, Øystein. Loss of stomach, loss of appetite? Sequencing of the ballan wrasse (Labrus bergylta) genome and intestinal transcriptomic profiling illuminate the evolution of loss of stomach function in fish. BMC Genomics 2018 ;Volume 19.(186) p. 1-17 HAVFORSK UiO UiB |
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| 7. | Tedersoo, Leho; Tooming-Klunderud, Ave; Anslan, Sten. PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives. New Phytologist 2018 ;Volume 217.(3) p. 1370-1385 UiO |
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2017
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| 8. | Tørresen, Ole Kristian; Star, Bastiaan; Jentoft, Sissel; Reinar, William Brynildsen; Grove, Harald; Miller, Jason R.; Walenz, Brian; Knight, James; Ekholm, Jenny M.; Peluso, Paul; Edvardsen, Rolf; Tooming-Klunderud, Ave; Skage, Morten; Lien, Sigbjørn; Jakobsen, Kjetill Sigurd; Nederbragt, Alexander Johan. An improved genome assembly uncovers prolific tandem repeats in Atlantic cod. BMC Genomics 2017 ;Volume 18. p. 1-23 UIA NMBU UiO HAVFORSK |
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2016
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| 9. | Frank, Jeremy A.; Pan, Yao; Tooming-Klunderud, Ave; Eijsink, Vincent; McHardy, Alice C; Nederbragt, Alexander Johan; Pope, Phillip. Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data. Scientific Reports 2016 ;Volume 6. p. - UiO NMBU |
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| 10. | Lien, Sigbjørn; Koop, Ben F; Sandve, Simen Rød; Miller, Jason R.; Kent, Matthew Peter; Nome, Torfinn; Hvidsten, Torgeir Rhoden; Leong, Jong; Minkley, David R.; Zimin, Aleksey; Grammes, Fabian; Grove, Harald; Gjuvsland, Arne Bjørke; Walenz, Brian; Hermansen, Russell A.; von Schalburg, Kristian R.; Rondeau, Eric; Genova, Alex Di; Antony Samy, Jeevan Karloss; Vik, Jon Olav; Vigeland, Magnus Dehli; Caler, Lis; Grimholt, Unni; Jentoft, Sissel; Våge, Dag Inge; de Jong, Pieter J.; Moen, Thomas; Baranski, Matthew; Palti, Yniv; Smith, Douglas W.; Yorke, James A.; Nederbragt, Alexander J.; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Jiang, Xuanting; Fan, Dingding; Hu, Yan; Liberles, David A.; Vidal, Rodrigo; Iturra, Patricia; Jones, Steven J.M.; Jonassen, Inge; Maass, Alejandro; Omholt, Stig William; Davidson, William S. The Atlantic salmon genome provides insights into rediploidization. Nature 2016 ;Volume 533.(7602) p. 200-205 NMBU VETINST UiO OUS UiB NTNU NOFIMA |
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2015
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| 11. | Baldo, Laura; Riera, Joan Lluis; Tooming-Klunderud, Ave; Alba, M. Mar; Salzburger, Walter. Gut microbiota dynamics during dietary shift in eastern African cichlid fishes. PLOS ONE 2015 ;Volume 10.(5) UiO |
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| 12. | Stokke, Runar; Dahle, Håkon; Roalkvam, Irene; Wissuwa, Juliane; Daae, Frida Lise; Tooming-Klunderud, Ave; Thorseth, Ingunn Hindenes; Pedersen, Rolf B.; Steen, Ida Helene. Functional interactions among filamentous Epsilonproteobacteria and Bacteroidetes in a deep-sea hydrothermal vent biofilm. Environmental Microbiology 2015 ;Volume 17.(10) p. 4063-4077 UiB UiO |
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2014
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| 13. | Brembu, Tore; Winge, Per; Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Jakobsen, Kjetill Sigurd; Bones, Atle M.. The chloroplast genome of the diatom Seminavis robusta: New features introduced through multiple mechanisms of horizontal gene transfer. Marine Genomics 2014 ;Volume 16.(1) p. 17-27 UiO NTNU |
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| 14. | de Been, Mark; Lanza, Val F.; de Toro, Maria; Scharringa, Jelle; Dohmen, Wietske; Du, Yu; Hu, Juan; Lei, Ying; Li, Ning; Tooming-Klunderud, Ave; Heederik, Dick J. J.; Fluit, Ad C; Bonten, Marc J M; Willems, Rob J.L.; de la Cruz, Fernando; van Schaik, Willem. Dissemination of Cephalosporin Resistance Genes between Escherichia coli Strains from Farm Animals and Humans by Specific Plasmid Lineages. PLoS Genetics 2014 ;Volume 10.(12) p. - UiO |
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| 15. | Tørresen, Ole Kristian; Jentoft, Sissel; Star, Bastiaan; Sandve, Geir Kjetil F.; Skage, Morten; Hansen, Marianne Helén Selander; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Nederbragt, Alexander Johan. A new, high quality reference genome assembly for Atlantic cod. CEES Annual Student Conference; 2014-10-21 - 2014-10-22 UiO |
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| 16. | Xiao, Xi; Sogge, Hanne; Lagesen, Karin; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Rohrlack, Thomas. Use of high throughput sequencing and light microscopy show contrasting results in a study of phytoplankton occurrence in a freshwater environment. PLOS ONE 2014 ;Volume 9.(8) UiO NIVA NMBU |
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2013
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| 17. | Sogge, Hanne; Rohrlack, Thomas; Rounge, Trine Ballestad; Sønstebø, Jørn Henrik; Tooming-Klunderud, Ave; Kristensen, Tom; Jakobsen, Kjetill Sigurd. Gene flow, recombination, and selection in cyanobacteria: population structure of geographically related Planktothrix Freshwater Strains. Applied and Environmental Microbiology 2013 ;Volume 79.(2) p. 508-515 KREFTREG NIBIO NIVA UiO NMBU |
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| 18. | Tooming-Klunderud, Ave; Sogge, Hanne; Rounge, Trine Ballestad; Nederbragt, Alexander Johan; Lagesen, Karin; Glöckner, Gernot; Hayes, Paul K; Rohrlack, Thomas; Jakobsen, Kjetill Sigurd. From Green to Red: Horizontal Gene Transfer of the Phycoerythrin Gene Cluster between Planktothrix Strains. Applied and Environmental Microbiology 2013 ;Volume 79.(21) p. 6803-6812 UiO KREFTREG NIVA NMBU |
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2012
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| 19. | Nederbragt, Alexander Johan; Tørresen, Ole Kristian; Skage, Morten; Tooming-Klunderud, Ave; Hansen, Marianne Helén Selander; Jentoft, Sissel; Omholt, Stig W; Lien, Sigbjørn; Jakobsen, Kjetill Sigurd. The long jump: Long distance mate pairs and long PacBio reads for the Salmon Genome Project. 1st International Conference on Integrative Salmonid Biology (ICISB); 2012-06-17 - 2012-06-20 NTNU UiO NMBU |
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2011
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| 20. | Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone Fredsvik; Rounge, Trine Ballestad; Paulsen, Jonas; Solbakken, Monica Hongrø; Sharma, Animesh; Wetten, Ola Frang; Lanzén, Anders; Winer, Roger; Knight, James; Vogel, Jan-Hinnerk; Aken, Bronwen; Andersen, Øivind; Lagesen, Karin; Tooming-Klunderud, Ave; Edvardsen, Rolf; Kirubakaran, G. Tina; Espelund, Mari; Nepal, Chirag; Previti, A. Christopher; Karlsen, Bård Ove; Moum, Truls; Skage, Morten; Berg, Paul Ragnar; Gjøen, Tor; Kuhl, Heiner; Thorsen, Jim; Malde, Ketil; Reinhardt, Richard; Du, Lei; Johansen, Steinar Daae; Searle, Steve; Lien, Sigbjørn; Nilsen, Frank; Jonassen, Inge; Omholt, Stig W; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd. The genome sequence of Atlantic cod reveals a unique immune system. Nature 2011 ;Volume 477.(7363) p. 207-210 HAVFORSK NMBU UiT HINN UiO UiB NOFIMA NORCE OUS NORD |
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| 21. | Star, Bastiaan; Nederbragt, Alexander Johan; Jentoft, Sissel; Grimholt, Unni; Malmstrøm, Martin; Gregers, Tone Fredsvik; Rounge, Trine Ballestad; Solbakken, Monica Hongrø; Paulsen, Jonas; Lagesen, Karin; Tooming-Klunderud, Ave; Tina, Kirubakaran G.; Espelund, Mari; Skage, Morten; Berg, Paul Ragnar; Omholt, Stig W; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd. The genome of Atlantic cod reveals a unique immune system. ESEB; 2011-09-20 - 2011-09-25 FFI OUS UiB UiO |
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| 22. | Andersen, Øivind; De Rosa, Maria Cristina; Pirolli, Davide; Tooming-Klunderud, Ave; Petersen, Petra E; André, Carl. Polymorphism, selection and tandem duplication of transferrin genes in Atlantic cod (Gadus morhua) - Conserved synteny between fish monolobal and tetrapod bilobal transferrin loci. BMC Genetics 2011 ;Volume 12.(51) p. - NMBU NOFIMA UiO |
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| 23. | Gabrielsen, Tove M; Minge, Marianne Aastebøl; Espelund, Mari; Tooming-Klunderud, Ave; Patil, Viswanath; Nederbragt, Alexander Johan; Otis, Christian; Turmel, Monique; Shalchian-Tabrizi, Kamran; Lemieux, Claude; Jakobsen, Kjetill Sigurd. Genome Evolution of a Tertiary Dinoflagellate Plastid. PLOS ONE 2011 ;Volume 6.(4) p. e19132- UiO |
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2010
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| 24. | Dahle, Håkon; Roalkvam, Irene; Jørgensen, Steffen Leth; Hoem, Solveig; Mitra, Suparna; Huson, Daniel; Tooming-Klunderud, Ave; Thorseth, Ingunn Hindenes; Pedersen, Rolf-Birger; Steen, Ida Helene. Microbial community structure of biomats and chimney walls of the Loki’s Castle hydrothermal field at 73°N. 8th International conference on extremophiles; 2010-09-12 - 2010-09-16 UiB UiO |
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| 25. | Nederbragt, Alexander Johan; Tooming-Klunderud, Ave. From next generation reads to genomes: experiences gained from different genome projects. Nordic GS FLX User meeting 2010; 2010-11-24 - 2010-11-24 UiO |
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| 26. | Tooming-Klunderud, Ave. From next generation reads to genomes: experiences gained from different genome projects. Seminar i mikrobiell genetikk; 2010-09-22 - 2010-09-22 UiO |
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| 27. | Tooming-Klunderud, Ave. HIgh throughput sequencing at the Norwegian Sequencing Centre: possibilities and procedures. seminar i mikrobiell genomikk; 2010-09-22 - 2010-09-22 UiO |
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| 28. | Tooming-Klunderud, Ave. Planktothrix genome project - from 454 reads to interesting results. MicroMatNat Work in Progress; 2010-11-10 - 2010-11-10 UiO |
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| 29. | Tooming-Klunderud, Ave. 454 sequencing at the Norwegian Sequencing Centre: possibilities, procedures and projects. Seminar; 2010-05-20 - 2010-05-20 UiO |
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2009
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| 30. | Andersen, Øivind; Dahle, Stine Veronica Wiborg; van Nes, Solveig; Bardal, Tora; Tooming-Klunderud, Ave; Kjørsvik, Elin; Galloway, Trine Falck. Differential spatio-temporal expression and functional diversification of the myogenic regulatory factors MyoD1 and MyoD2 in Atlantic halibut (Hippoglossus hippoglossus). Comparative Biochemistry and Physiology - Part B: Biochemistry & Molecular Biology 2009 ;Volume 154.(1) p. 93-101 UiO NTNU NOFIMA |
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| 31. | Grimholt, Unni; Malmstrøm, Martin; Nederbragt, Alexander Johan; Rounge, Trine Ballestad; Jentoft, Sissel; Tooming-Klunderud, Ave; Star, Bastiaan; Skage, Morten; Gaup, Hege Junita; Jakobsen, Kjetill Sigurd. The lack of cod MHC class II. Genofisk meeting; 2009-10-14 - 2009-10-14 UiO |
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| 32. | Grimholt, Unni; Nederbragt, Alexander Johan; Rounge, Trine Ballestad; Malmstrøm, Martin; Star, Bastiaan; Tooming-Klunderud, Ave; Skage, Morten; Jentoft, Sissel; Gaup, Hege Junita; Bakke, Hege; Solbakken, Monica Hongrø; Jakobsen, Kjetill Sigurd. The cod genome project. Third International Workshop on Fish Genomes; 2009-03-13 - 2009-03-14 UiO |
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| 33. | Tooming-Klunderud, Ave. Cod genome project. Roche Nordic User Meeting; 2009-11-09 - 2009-11-09 UiO |
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| 34. | Tooming-Klunderud, Ave. Library preparation for pyrosequencing. Metagenome meeting; 2009-05-25 - 2009-05-25 UiO |
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| 35. | Tooming-Klunderud, Ave; Nederbragt, Alexander Johan; Skage, Morten; Jakobsen, Kjetill Sigurd. The Ultra-high Throughput Sequencing Platform at the University of Oslo. The Norwegian Biochemical Society Contact Meeting 2009; 2009-01-29 - 2009-02-01 UiO |
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2008
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| 36. | Fewer, DP; Tooming-Klunderud, Ave; Jokela, J; Wahsten, M; Rouhiainen, L; Kristensen, Tom; Rohrlack, T; Jakobsen, Kjetill Sigurd; Sivonen, K. Natural occurrence of microcystin synthetase deletion mutants capable of producing microcystins in strains of the genus Anabaena (Cyanobacteria). Microbiology (Reading) 2008 ;Volume 154. p. 1007-1014 UiO |
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| 37. | Tooming-Klunderud, Ave; Fewer, DP; Rohrlack, Thomas; Jokela, J; Rouhiainen, L; Sivonen, K; Kristensen, Tom; Jakobsen, Kjetill Sigurd. Evidence for positive selection acting on microcystin synthetase adenylation domains in three cyanobacterial genera. BMC Evolutionary Biology 2008 ;Volume 8. p. - UiO NIVA |
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| 38. | Tooming-Klunderud, Ave; Mikalsen, Bjørg; Kristensen, Tom; Jakobsen, Kjetill Sigurd. The mosaic structure of the mcyABC operon in Microcystis. Microbiology (Reading) 2008 ;Volume 154. p. 1886-1899 UiO |
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2007
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| 39. | Rounge, Trine Ballestad; Rohrlack, Thomas; Tooming-Klunderud, Ave; Kristensen, Tom; Jakobsen, Kjetill Sigurd. Comparison of cyanopeptolin genes in Planktothrix, Microcystis, and Anabaena strains: Evidence for independent evolution within each genus. Applied and Environmental Microbiology 2007 ;Volume 73. p. 7322-7330 UiO NIVA |
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| 40. | Tooming-Klunderud, Ave; Rohrlack, Thomas; Shalchian-Tabrizi, Kamran; Kristensen, Tom; Jakobsen, Kjetill Sigurd. Structural analysis of a non-ribosomal halogenated cyclic peptide and its putative operon from Microcystis: implications for evolution of cyanopeptolins. Microbiology (Reading) 2007 ;Volume 153.(5) p. 1382-1393 UiO NIVA |
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| 41. | Østbye, Tone-Kari K; Andersen, Øivind; Frang, Ola T; Tooming-Klunderud, Ave; Jakobsen, Kjetill S.; Yafe, Anat; Etzioni, Shulamit; Moen, Thomas. Molecular cloning of the Atlantic salmon activin receptor IIB cDNA - Localization of the receptor and myostatin in vivo and in vitro in muscle cells. Gene 2007 ;Volume 403.(01.feb) p. 159-169 UiO NOFIMA |
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| 42. | Østbye, Tone-Kari K; Wetten, Ola F.; Tooming-Klunderud, Ave; Jakobsen, Kjetill Sigurd; Yafe, Anat; Etzioni, Shulamit; Moen, Thomas; Andersen, Øivind. Myostatin (MSTN) gene duplications in Atlantic salmon (Salmo salar): Evidence for different selective pressure on teleost MSTN-1 and -2. Gene 2007 ;Volume 403. p. 159-169 UiO NOFIMA |
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