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Showing results 1-30 of 30

2023
1 Ngoumelah, Daniel Dzofou; Harnisch, Falk; Sulheim, Snorre; Heggeset, Tonje Marita Bjerkan; Aune, Ingvild; Wentzel, Alexander; Kretzschmar, Jörg.
A unified and simple medium for growing model methanogens. Frontiers in Microbiology 2023 ;Volume 13.
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2021
2 Ankrah, N.Y.D; Bernstein, David B.; Biggs, Matthew; Carey, Maureen; Engevik, Melinda; García-Jiménez, Beatriz; Lakshmanan, Meiyappan; Pacheco, Alan R.; Sulheim, Snorre; Medlock, Gregory L..
Enhancing Microbiome Research through Genome-Scale Metabolic Modeling. mSystems 2021 ;Volume 6.(6) p. -
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3 Bernstein, David B.; Sulheim, Snorre; Almaas, Eivind; Segrè, Daniel.
Addressing uncertainty in genome-scale metabolic model reconstruction and analysis. Genome Biology 2021 ;Volume 22. p. 1-22
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4 Dukovski, Ilija; Bajić, Djordje; Chacón, Jeremy M.; Quintin, Michael; Vila, Jean C. C.; Sulheim, Snorre; Pacheco, Alan R.; Bernstein, David B.; Riehl, William J.; Korolev, Kirill S.; Sanchez, Alvaro; Harcombe, William R.; Segrè, Daniel.
A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS). Nature Protocols 2021 ;Volume 16. p. 5030-5082
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5 Ofaim, Shany; Sulheim, Snorre; Almaas, Eivind; Sher, Daniel; Segrè, Daniel.
Dynamic Allocation of Carbon Storage and Nutrient-Dependent Exudation in a Revised Genome-Scale Model of Prochlorococcus. Frontiers in Genetics 2021 ;Volume 12. p. -
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6 Sulheim, Snorre.
Hvordan kan vi bruke matematiske modeller til å designe mikrobiomer?. Dataanalyser som redder verden – science not fiction; 2021-11-10 - 2021-11-10
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7 Sulheim, Snorre; Fossheim, Fredrik A.; Wentzel, Alexander; Almaas, Eivind.
Automatic reconstruction of metabolic pathways from identified biosynthetic gene clusters. BMC Bioinformatics 2021 ;Volume 22. p. -
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8 Sulheim, Snorre; Kumelj, Tjasa; van Dissel, Dino; Salehzadeh-Yazdi, Ali; Du, Chao; Van Wezel, Gilles P.; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard.
A systems comparison of Streptomyces coelicolor M1152 and M145 reveals major metabolic rewiring. COBRA 2021; 2021-03-01 - 2021-03-02
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2020
9 Sulheim, Snorre; Fredrik A., Fossheim; Almaas, Eivind.
Automatic reconstruction of metabolic pathways from annotated biosynthetic gene clusters. NORBIS annual national conference 2020; 2020-11-03 - 2020-11-04
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10 Sulheim, Snorre; Kumelj, Tjasa; van Dissel, Dino; Salehzadeh-Yazdi, Ali; Du, Chao; Van Wezel, Gilles P.; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard J.
Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production. iScience 2020 ;Volume 23.(9) p. -
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2019
11 Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind.
Predicting strain engineering strategies using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Biotechnology Journal 2019 p. -
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12 Sulheim, Snorre; Kumelj, Tjasa; Salehzadeh-Yazdi, Ali; van Dissel, Dino; Chao, Du; Nieselt, Kay; Almaas, Eivind; Wentzel, Alexander; Kerkhoven, Eduard.
An enzyme-constrained genome-scale metabolic model of Streptomyces coelicolor reveals global effects of gene cluster deletion and rpoB mutation. Digital Life Norway Conference 2019; 2019-09-05 - 2019-09-06
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13 Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Borgos, Sven Even F.; Kumelj, Tjasa; Kumar, Kanhaiya; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien S.; Mead, David A.; Medema, Marnix H.; Navarro Munoz, Jorge; Fernandez-Guerra, Antonio; van Dissel, Dino; Hulst, Mandy; Chao, Du; Van Wezel, Gilles P.; Wang, Hao; Kerkhoven, Eduard; Salehzadeh-Yazdi, Ali; Wolkenhauer, Olaf; Nieselt, Kay; Iftime, Dumitrita; Bera, Agnieszka; Hinder, Markus; Stegmann, Evi; Wohlleben, Wolfgang; Ellingsen, Trond Erling; Sletta, Håvard.
Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. 2nd Synthetic Biology for Natural Products Conference; 2019-06-02 - 2019-06-05
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14 Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Borgos, Sven Even F.; Kumelj, Tjasa; Kumar, Kanhaiya; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien S.; Mead, David A.; Medema, Marnix H.; Navarro Munoz, Jorge; Fernandez-Guerra, Antonio; van Dissel, Dino; Hulst, Mandy; Du, Chao; Van Wezel, Gilles P.; Wang, Hao; Kerkhoven, Eduard; Salehzadeh-Yazdi, Ali; Wolkenhauer, Olaf; Nieselt, Kay; Iftime, Dumitrita; Bera, Agnieszka; Hinder, Markus; Stegmann, Evi; Wohlleben, Wolfgang; Ellingsen, Trond Erling; Sletta, Håvard.
Expanding the (meta)genomics toolbox for the discovery and production of novel natural products from microbial resources. Functional Metageomics 2019; 2019-06-16 - 2019-09-19
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2018
15 Degnes, Kristin Fløgstad; Nguyen, Giang-Son; Sulheim, Snorre; Klinkenberg, Geir; Sletta, Håvard; Lewin, Anna; Nordborg, Anna; Ellingsen, Trond E; Liles, Mark R.; Sandoval, Megan; Waits, Damien; Medema, Marnix H.; Navarro Munoz, Jorge; Fernandez-Guerra, Antonio; Wentzel, Alexander.
Novel insights into the natural product potential of a marine Actinobacteria strain collection by combining classical and genomics-based bioprospecting. DigitalLife 2018; 2018-03-20 - 2018-03-21
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16 Sulheim, Snorre; Degnes, Kristin Fløgstad; Nguyen, Giang-Son; Wentzel, Alexander; Almaas, Eivind.
A network approach to efficient drug discovery. International School and Conference on Network Science; 2018-06-11 - 2018-06-15
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17 Sulheim, Snorre; Kumelj, Tjasa; Sletta, Håvard; Wentzel, Alexander; Almaas, Eivind.
Predicting phenotypes using iKS1317: a genome-scale metabolic model of Streptomyces coelicolor. Digital Life Conference 2018; 2018-03-20 - 2018-03-21
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18 Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind.
Modelling the metabolic switch S. coelicolor triggered by phosphate depletion. 5th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2018); 2018-10-14 - 2018-10-16
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2017
19 Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind.
A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology; 2017-06-18 - 2017-06-22
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20 Kumelj, Tjasa; Sulheim, Snorre; Wentzel, Alexander; Almaas, Eivind.
Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017); 2017-08-06 - 2017-08-12
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21 Sulheim, Snorre; Almaas, Eivind; Kumelj, Tjasa.
A genome-scale metabolic reconstruction of S. coelicolor. NORBIS annual national conference 2017; 2017-11-08 - 2017-11-10
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22 Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind.
A genome-scale metabolic model for Streptomyces coelicolor. Advanced course on Metabolic engineering and Systems Biology; 2017-06-18 - 2017-06-22
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23 Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind.
A genome-scale metabolic model for Streptomyces coelicolor. Lunsj-seminar; 2017-09-20 - 2017-09-20
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24 Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind.
A genome-scale metabolic model for Streptomyces coelicolor. Methodologies for Digital Life - Focus on Metabolic Systems; 2017-10-06
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25 Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind.
A genome-scale metabolic model for Streptomyces coelicolor. Modelling living systems - From foundational problems to applications; 2017-09-07 - 2017-09-08
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26 Sulheim, Snorre; Kumelj, Tjasa; Wentzel, Alexander; Almaas, Eivind.
Extended GEM of Streptomyces coelicolor for production of secondary metabolites. International conference on systems biology 2017 (ICSB 2017); 2017-08-06 - 2017-08-12
NTNU SINTEF Untitled
 
27 Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard.
New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Centre for Digital Life Norway - Annual conference; 2017-03-20 - 2017-03-21
NTNU SINTEF UiO Untitled
 
28 Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard.
New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Synthetic Biology of Natural Products; 2017-03-05 - 2017-03-08
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29 Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard.
New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. Meeting with the ReDig project; 2017-09-19 - 2017-09-19
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30 Wentzel, Alexander; Lewin, Anna; Nordborg, Anna; Nguyen, Giang-Son; Degnes, Kristin Fløgstad; Sulheim, Snorre; Kumelj, Tjasa; Bruheim, Per; Almaas, Eivind; Liles, Mark R.; Sandoval, Megan; Waits, Damien; ERASysAPP SYSTERACT cons., The; Ellingsen, Trond Erling; Sletta, Håvard.
New bioactive compounds from environmental microbial resources by an integrated functional (meta)genomics approach. BioProsp 2017, the 8th International Conference on Marine Biotechnology; 2017-03-08 - 2017-03-10
NTNU SINTEF UiO Untitled