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2024
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| 1. | Schwarz, Simon D.; Xu, Jianming; Gunasekera, Kapila; Schürmann, David; Vågbø, Cathrine Broberg; Ferrari, Elena; Slupphaug, Geir; Hottiger, Michael O.; Schär, Primo; Steinacher, Roland. Covalent PARylation of DNA base excision repair proteins regulates DNA demethylation. Nature Communications 2024 ;Volume 15.(1) p. - NTNU STO |
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2023
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| 2. | Brambilla, Alessandro; Coron, Abba Elizabeth; Fonseca, Davi de Miranda; Sharma, Animesh; Slupphaug, Geir; Strand, Berit Løkensgard; Rokstad, Anne Mari A.. MS-proteomics provides insight into the host responses towards alginate microspheres. A HEALTHY FUTURE; 2023-10-05 - 2023-10-05 NTNU |
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| 3. | Coron, Abba Elizabeth; Kjesbu, Joachim Sebastian; Fonseca, Davi de Miranda; Sharma, Animesh; Slupphaug, Geir; Strand, Berit Løkensgard; Rokstad, Anne Mari A.. MS-based proteomic profiling of alginate microspheres relevant for cell therapy. ScSB meeting - Bioinspiration in biomaterials; 2023-03-21 - 2023-03-24 NTNU |
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| 4. | Gederaas, Odrun Arna; Sharma, Animesh; Mbarak, Saide; Sporsheim, Bjørnar; Høgset, Anders; Bogoeva, Vanya; Slupphaug, Geir; Hagen, Lars. Proteomic analysis reveals mechanisms underlying increased efficacy of bleomycin by photochemical internalization in bladder cancer cells. Molecular Omics 2023 ;Volume 19.(7) p. 585-597 NTNU UIA |
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| 5. | Hayran , Abdul Baset ; Liabakk, Nina-Beate; Aas, Per Arne; Kusnierczyk, Anna; Vågbø, Cathrine Broberg; Sarno, Antonio; Iveland, Tobias Solli; Chawla, Konika; Zahn, Astrid; DiNoia, Javier M; Slupphaug, Geir; Kavli, Bodil Merete. RPA guides UNG to uracil in ssDNA to facilitate antibody class switching and repair of mutagenic uracil at the replication fork. Nucleic Acids Research (NAR) 2023 ;Volume 52.(2) p. 784-800 NTNU STO |
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| 6. | Lin, Xiaolin; Wang, Wei; Yang, Mingyi; Damseh, Nadirah; Sousa, Mirta; Jacob, Fadi; Lång, Anna Ulrika; Kristiansen, Elise; Pannone, Marco; Kissova, Miroslava; Almaas, Runar; Kusnierczyk, Anna; Siller, Richard; Shahrour, Maher; Al-Ashhab, Motee; Abu-Libdeh, Bassam; Tang, Wannan; Slupphaug, Geir; Elpeleg, Orly; Bøe, Stig Ove; Eide, Lars; Sullivan, Gareth John; Rinholm, Johanne Egge; Song, Hongjun; Ming, Guo-li; van Loon, Barbara; Edvardson, Simon; Ye, Jing; Bjørås, Magnar. A loss-of-function mutation in human Oxidation Resistance 1 disrupts the spatial–temporal regulation of histone arginine methylation in neurodevelopment. Genome Biology 2023 ;Volume 24.(1) p. - NTNU UiO OUS |
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| 7. | Ragunathan, Kalaiyarasi; Brambilla, Alessandro; Kjesbu, Joachim Sebastian; Fonseca, Davi de Miranda; Sharma, Animesh; Slupphaug, Geir; Strand, Berit Løkensgard; Rokstad, Anne Mari A.. Exploring Immunogenicity of Sulphated Alginate Beads: Insights from Whole Blood Model and Protein Adsorption Analysis. A HEALTHY FUTURE; 2023-10-05 - 2023-10-05 NTNU |
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| 8. | Ragunathan, Kalaiyarasi; Brambilla, Alessandro; Kjesbu, Joachim Sebastian; Fonseca, Davi de Miranda; Sharma, Animesh; Slupphaug, Geir; Strand, Berit Løkensgard; Rokstad, Anne Mari A.. The initial host response to alginate-based microbeads in human whole blood depict by functional response and mass spectrometry. ScSB meeting - Bioinspiration in biomaterials; 2023-03-21 - 2023-03-24 NTNU |
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2022
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| 9. | Coron, Abba Elizabeth; Fonseca, Davi de Miranda; Sharma, Animesh; Slupphaug, Geir; Strand, Berit Løkensgard; Rokstad, Anne Mari A.. MS-proteomics provides insight into the host responses towards alginate microspheres. Materials Today Bio 2022 ;Volume 17. p. 1-20 STO NTNU |
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| 10. | Eldin, Patrick; Vågbø, Cathrine Broberg; Salinas, Sara; Hagiwara, Masatoshi; Slupphaug, Geir; Briant, Laurence. Le virus Zika reprogramme l'epitranscriptome des ARNt de l'hote pour l'adapter a son biais des codons et faciliter sa traduction. XXIVème Journées Francophones de Virologie; 2022-04-11 - 2022-04-12 NTNU STO |
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| 11. | Slupphaug, Geir; Dikic, Aida; Berg, Sigrid Karlsen; Sharma, Animesh; Hagen, Lars; Vågbø, Cathrine Broberg. Enhanced protein translation fidelity – a novel target in multiple myeloma treatment?. 8th International Caparica Conference on Analytical Proteomics 2022; 2022-07-18 - 2022-07-21 NTNU |
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2021
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| 12. | Alswady-Hoff, Mayes; Erdem, Johanna Maria Samulin; Phuyal, Santosh; Knittelfelder, Oskar; Sharma, Animesh; Fonseca, Davi de Miranda; Skare, Øivind; Slupphaug, Geir; Zienolddiny, Shanbeh. Long-Term Exposure to Nanosized TiO2 Triggers Stress Responses and Cell Death Pathways in Pulmonary Epithelial Cells. International Journal of Molecular Sciences 2021 ;Volume 22.(10) p. - NTNU UiO STAMI |
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| 13. | Alves, Christiano R. R.; Eichelberger, Eric J.; das Neves, Willian; Ribeiro, Márcio A. C.; Bechara, Luiz R.G.; Voltarelli, Vanessa A.; de Almeida, Ney R.; Hagen, Lars; Sharma, Animesh; Ferreira, Julio C. B.; Swoboda, Kathryn J.; Slupphaug, Geir; Brum, Patricia C.. Cancer-induced muscle atrophy is determined by intrinsic muscle oxidative capacity. The FASEB Journal 2021 ;Volume 35.(7) p. - NTNU |
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| 14. | Hildrestrand, Gunn Annette; Rolseth, Veslemøy; Kunath, Nicolas; Suganthan, Rajikala; Jensen, Vidar; Bugaj, Anna Maria; Fernandez Berrocal, Marion Silvana; SIkko, Sunniva Bøe; Vetlesen, Susanne; Kusnierczyk, Anna; Olsen, Ann-Karin Hardie; Gutzkow, Kristine Bjerve; Rowe, Alexander D.; Wang, Wei; Moldestad, Olve; Syrstad, Monica Dahl; Slupphaug, Geir; Eide, Lars; Klungland, Arne; Sætrom, Pål; Luna, Luisa; Ye, Jing; Scheffler, Katja; Bjørås, Magnar. NEIL1 and NEIL2 DNA glycosylases modulate anxiety and learning in a cooperative manner in mice. Communications Biology 2021 ;Volume 4. p. - UiO FHI OUS NMBU STO NTNU |
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| 15. | Iveland, Tobias S.; Hagen, Lars; Sharma, Animesh; Sousa, Mirta M. L.; Sarno, Antonio; Wollen, Kristian Lied; Liabakk, Nina-Beate; Slupphaug, Geir. Correction to: HDACi mediate UNG2 depletion, dysregulated genomic uracil and altered expression of oncoproteins and tumor suppressors in B- and T-cell lines (Journal of Translational Medicine, (2020), 18, 1, (159), 10.1186/s12967-020-02318-8). Journal of Translational Medicine 2021 ;Volume 19.(1) p. - NTNU STO |
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| 16. | Kavli, Bodil Merete; Iveland, Tobias Solli; Buchinger, Edith; Hagen, Lars; Liabakk, Nina-Beate; Aas, Per Arne; Obermann, Tobias Sebastian; Aachmann, Finn Lillelund; Slupphaug, Geir. RPA2 winged-helix domain facilitates UNG-mediated removal of uracil from ssDNA; implications for repair of mutagenic uracil at the replication fork. Nucleic Acids Research (NAR) 2021 ;Volume 49.(7) p. 3948-3966 STO NTNU |
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| 17. | Olinski, Ryszard; Slupphaug, Geir; Foksinski, Marek; Krokan, Hans Einar. Genomic Uracil and Aberrant Profile of Demethylation Intermediates in Epigenetics and Hematologic Malignancies. International Journal of Molecular Sciences 2021 ;Volume 22.(8) STO NTNU |
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| 18. | Steen, Kristian Wollen; Hagen, Lars; Vågbø, Cathrine Broberg; Rabe, Renana; Iveland, Tobias Solli; Aas, Per Arne; Sharma, Animesh; Sporsheim, Bjørnar; Erlandsen, Hilde; Palibrk, Vuk; Bjørås, Magnar; Fonseca, Davi de Miranda; Mosammaparast, Nima; Slupphaug, Geir. ALKBH3 partner ASCC3 mediates P-body formation and selective clearance of MMS-induced 1-methyladenosine and 3-methylcytosine from mRNA. Journal of Translational Medicine 2021 ;Volume 19.(1) p. - STO NTNU |
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| 19. | Wang, Qiong; Karvelsson, Sigurdur Trausti; Johannsson, Freyr; Vilhjalmsson, Arnar Ingi; Hagen, Lars; Fonseca, Davi de Miranda; Sharma, Animesh; Slupphaug, Geir; Rolfsson, Ottar. UDP-glucose dehydrogenase expression is upregulated following EMT and differentially affects intracellular glycerophosphocholine and acetylaspartate levels in breast mesenchymal cell lines. Molecular Oncology 2021 p. 1-25 NTNU STO |
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2020
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| 20. | Alves, Christiano R. R.; des Neves, Willian; de Almeida, Ney R; Eichelberger, Eric J; Jannig, Paulo R.; Voltarelli, Vanessa A; Tobias, Gabriel C; Bechara, Luiz R G; de Paula Faria, Daniele; Alves, Maria J N; Hagen, Lars; Sharma, Animesh; Slupphaug, Geir; Moreira, Jose Bianco Nascimento; Wisløff, Ulrik; Hirshman, Michael F.; Negrao, Carlos E.; de Castro Jr, Gilberto; Chammas, Roger; Swoboda, Kathryn J.; Ruas, Jorge L.; Goodyear, Laurie J.; Brum, Patricia Chakur. Exercise training reverses cancer-induced oxidative stress and decrease in muscle COPS2/TRIP15/ALIEN. Molecular Metabolism 2020 NTNU |
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| 21. | Eldin, Patrick; Péron, Sophie; Galashevskaya, Anastasia; Denis-Lagache, Nicolas; Cogné, Michel; Slupphaug, Geir; Briant, Laurence. Impact of HIV-1 Vpr manipulation of the DNA repair enzyme UNG2 on B lymphocyte class switch recombination. Journal of Translational Medicine 2020 ;Volume 18.(1) p. - NTNU |
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| 22. | Iveland, Tobias Solli; Hagen, Lars; Sharma, Animesh; Sousa, Mirta; Sarno, Antonio; Wollen, Kristian Lied; Liabakk, Nina-Beate; Slupphaug, Geir. HDACi Mediate UNG2 Depletion, Dysregulated Genomic Uracil and Altered Expression of Oncoproteins and Tumor Suppressors in B- And T-cell Lines. Journal of Translational Medicine 2020 ;Volume 18. STO NTNU |
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| 23. | Kavli, Bodil Merete; Slupphaug, Geir; Krokan, Hans Einar. Genomic Uracil in Biology, Immunity and Cancer. I: DNA Damage, DNA Repair and Disease: Volume 1. Royal Society of Chemistry (RSC) Publishing 2020 ISBN 978-1-78801-889-0. p. 220-248 NTNU |
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| 24. | Vågbø, Cathrine Broberg; Slupphaug, Geir. RNA in DNA repair. DNA Repair 2020 ;Volume 95. p. 1-11 NTNU STO |
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| 25. | Yang, Rui; Elsaadi, Samah; Misund, Kristine; Abdollahi, Pegah; Vandsemb, Esten; Moen, Siv Helen; Kusnierczyk, Anna; Slupphaug, Geir; Standal, Therese; Waage, Anders; Slørdahl, Tobias Schmidt; Rø, Torstein Baade; Rustad, Even Holth; Sundan, Anders; Hay, Carl; Cooper, Zachary; Schuller, Alwin G.; Woessner, Richard; Borodowski, Alexandra; Menu, Eline; Børset, Magne; Sponaas, Anne-Marit. Conversion of ATP to adenosine by CD39 and CD73 in multiple myeloma can be successfully targeted together with adenosine receptor A2A blockade. Journal for ImmunoTherapy of Cancer (JITC) 2020 STO NTNU |
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2019
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| 26. | Coron, Abba Elizabeth; Fonseca, Davi de Miranda; Sharma, Animesh; Slupphaug, Geir; Rokstad, Anne Mari A.; Strand, Berit Løkensgard. Elucidating host responses towards alginate microspheres using proteomics. Scandinavian Society for Biomaterials 2019 Conference; 2019-06-12 - 2019-06-14 NTNU |
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| 27. | Macur, Katarzyna; Hagen, Lars; Ciesielski, Tomasz Maciej; Konieczna, Lucyna; Skokowski, Jaroslaw; Jenssen, Bjørn Munro; Slupphaug, Geir; Baczek, Tomasz. A targeted mass spectrometry immunoassay to quantify osteopontin in fresh-frozen breast tumors and adjacent normal breast tissues. Journal of Proteomics 2019 ;Volume 208. p. 1-8 NTNU STO |
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| 28. | Pinto, Rita; Vågbø, Cathrine Broberg; Jakobsson, Magnus; Yeji, Kim; Baltissen, Marijke P; O'Donohue, Marie-Francoise; Guzman, Ulises H; Malecki, Jedrzej Mieczyslaw; Wu, Jie; Kirpekar, Finn; Olsen, Jesper V; Gleizes, Pierre-Emmanuel; Vermeulen, Michiel; Leidel, Sebastian A.; Slupphaug, Geir; Falnes, Pål Øystein. The human methyltransferase ZCCHC4 catalyses N6-methyladenosine modification of 28S ribosomal RNA. Nucleic Acids Research (NAR) 2019 ;Volume 48.(2) p. 830-846 NTNU UiO STO |
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| 29. | Slupphaug, Geir. Experiences from sabbatical at Berkeley 2019 – scientific and beyond. IKOM onsdagsforedrag; 2019-11-13 - 2019-11-13 NTNU |
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| 30. | Slupphaug, Geir. Selective removal of aberrant mRNA methylation may counteract “epitranscriptome confusion”. 18th annual Workshop on Structural Biology of DNA Repair (SBDR), Marshall, California; 2019-05-05 - 2019-05-09 NTNU |
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| 31. | Steinacher, Roland; Barekati, Zeinab; Botev, Petar; Kusnierczyk, Anna; Slupphaug, Geir; Schär, Primo. SUMOylation coordinates BERosome assembly in active DNA demethylation during cell differentiation. EMBO Journal 2019 ;Volume 38.(1) p. 1-18 NTNU |
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2018
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| 32. | Coron, Abba Elizabeth; Fonseca, Davi de Miranda; Sharma, Animesh; Slupphaug, Geir; Strand, Berit Løkensgard; Rokstad, Anne Mari. Identification of adsorbing human plasma proteins on alginate gel beads. BRG Capsule workshop 2018; 2018-09-17 - 2018-09-21 NTNU |
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| 33. | Coron, Abba Elizabeth; Fonseca, Davi de Miranda; Sharma, Animesh; Slupphaug, Geir; Strand, Berit Løkensgard; Rokstad, Anne Mari. Identification of adsorbing human plasma proteins on alginate gel beads. Nordic Proteomics Conference; 2018-04-18 - 2018-04-20 NTNU STO |
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| 34. | Kavli, Bodil Merete; Slupphaug, Geir. Genomic Uracil and Immunity. I: Genomic Uracil - Evolution, Biology, Immunology and Disease. World Scientific 2018 ISBN 978-981-3233-49-2. p. 153-182 NTNU STO |
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| 35. | Krokan, Hans Einar; Kavli, Bodil Merete; Sarno, Antonio; Slupphaug, Geir. Enzymology of Genomic Uracil Repair. I: Genomic Uracil - Evolution, Biology, Immunology and Disease. World Scientific 2018 ISBN 978-981-3233-49-2. p. 89-126 NTNU STO |
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| 36. | Krokan, Hans Einar; Kavli, Bodil Merete; Slupphaug, Geir. DNA Repair is Integrated with Many Cellular Processes. I: Genomic Uracil - Evolution, Biology, Immunology and Disease. World Scientific 2018 ISBN 978-981-3233-49-2. p. 1-13 NTNU STO |
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| 37. | Krokan, Hans Einar; Kavli, Bodil Merete; Slupphaug, Geir. Viral Uracil - Uracil DNA glycosylases and dUTPases. I: Genomic Uracil - Evolution, Biology, Immunology and Disease. World Scientific 2018 ISBN 978-981-3233-49-2. p. 127-152 NTNU STO |
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| 38. | Krokan, Hans Einar; Kavli, Bodil Merete; Slupphaug, Geir; Drabløs, Finn. The Earth, Life and Genomic Uracil. I: Genomic Uracil - Evolution, Biology, Immunology and Disease. World Scientific 2018 ISBN 978-981-3233-49-2. p. 15-45 NTNU STO |
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| 39. | Phuyal, Santosh; Kasem, Mayes; Knittelfelder, Oskar; Sharma, Animesh; Fonseca, Davi de Miranda; Vebraite, Vaineta; Shaposhnikov, Sergey; Slupphaug, Geir; Skaug, Vidar; Zienolddiny, Shanbeh. Characterization of the proteome and lipidome profiles of human lung cells after low dose and chronic exposure to multiwalled carbon nanotubes. Nanotoxicology 2018 ;Volume 12.(2) p. 138-152 NTNU STAMI |
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| 40. | Slupphaug, Geir. Endringer i genomet kontra endringer i proteomet- Hvordan kan proteomanalyser komplementere genetiske analyser?. Seminarserie-medisinsk Genetikk, St Olavs Hospital; 2018-10-24 NTNU |
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| 41. | Slupphaug, Geir. Selective removal of aberrantly methylated mRNA bases may avoid “epitranscriptome confusion”. Onsdagsforedrag IKOM; 2018-11-28 NTNU |
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| 42. | Slupphaug, Geir; Kavli, Bodil Merete; Krokan, Hans Einar. Routes to Uracil in DNA. I: Genomic Uracil - Evolution, Biology, Immunology and Disease. World Scientific 2018 ISBN 978-981-3233-49-2. p. 47-88 NTNU STO |
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| 43. | Slupphaug, Geir; Krokan, Hans Einar. Genomic Uracil - Evolution, Biology, Immunology and Disease. World Scientific 2018 (ISBN 978-981-3233-49-2) 290 p. NTNU STO |
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| 44. | Slupphaug, Geir; Krokan, Hans Einar. Genomic Uracil – Valuable Tool in Molecular Biology but Inherent Problem in Sequencing of Ancient DNA. I: Genomic Uracil - Evolution, Biology, Immunology and Disease. World Scientific 2018 ISBN 978-981-3233-49-2. p. 275-286 NTNU STO |
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| 45. | Slupphaug, Geir; Wollen Steen, Kristian; Rabe, Renana; Hagen, Lars; Aas, Per Arne; Sharma, Animesh; Vuk, Palibrk; Bjørås, Magnar; Mosammaparast, Nima; Fonseca, Davi de Miranda; Vågbø, Cathrine Broberg. A role of ASCC3 in the quality control of methylated mRNA. EMBO Workshop - From Epigenome towards Epitranscriptome in Cell Fate Choice; 2018-10-14 - 2018-10-17 NTNU |
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| 46. | Souza, Rodrigo W. A.; Alves, Christiano R. R.; Medeiros, Alessandra; Rolim, Natale Pinheiro Lage; Silva, Gustavo Jose Justo; Moreira, Jose Bianco Nascimento; Alves, Marcia Netto Magalhaes; Wohlwend, Martin; Gebriel, Mohammed; Hagen, Lars; Sharma, Animesh; Koch, Lauren G.; Britton, Steven L.; Slupphaug, Geir; Wisløff, Ulrik; Brum, Patricia C.. Differential regulation of cysteine oxidative post-translational modifications in high and low aerobic capacity. Scientific Reports 2018 ;Volume 8.(1) p. - NTNU |
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| 47. | Vågbø, Cathrine Broberg; Kusnierczyk, Anna; Slupphaug, Geir. DNA and RNA modification profiling using liquid chromatography – mass spectrometry. EMBO Workshop - From Epigenome towards Epitranscriptome in Cell Fate Choice; 2018-10-14 - 2018-10-17 NTNU |
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| 48. | Yang, Rui; Elsaadi, Samah; Misund, Kristine; Slupphaug, Geir; Menu, Eline; Hay, Carl; Cooper, Zac; Vanderkerken, Karin; Børset, Magne; Sponaas, Anne-Marit. Role of ectoenzymes CD39 and CD73 in the immune response to multiple myeloma. Annual Meeting of the American Association for Cancer Research; 2018-04-14 - 2018-04-18 NTNU |
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| 49. | Zhao, Chun-Mei; Rabben, Hanne-Line; Zhu, Yanping; Olsen, Magnus Kringstad; Wang, Zhiqiang; Hao, Yanpeng; Cai, Xing; Fonseca, Davi de Miranda; Sharma, Animesh; Li, Mingna; Zhihong, Zhang; Slupphaug, Geir; Wang, Timothy Cragin; Chen, Duan. 390 - A New Treatment for Pancreatic Cancer: Targeting Nervecancer Cell Crosstalk. Gastroenterology 2018 ;Volume 154. NTNU STO |
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2017
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| 50. | Brickner, Joshua R; Soll, Jennifer M; Lombardi, Patrick M; Vågbø, Cathrine Broberg; Mudge, Miranda C; Oyeniran, Clement; Rabe, Renana; Jackson, Jessica; Sullender, Meagan E; Blazosky, Elyse; Byrum, Andrea K; Zhao, Yu; Corbett, Mark A.; Gècz, Jozef; Field, Michael; Vindigni, Alessandro; Slupphaug, Geir; Wolberger, Cynthia; Mosammaparast, Nima. A ubiquitin-dependent signalling axis specific for ALKBH-mediated DNA dealkylation repair. Nature 2017 ;Volume 551.(7680) p. 389-393 NTNU |
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