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2024
1 Banerjee, Pragyan; Milind Akarte, Shivam; Kumar, Prakhar; Shamsuzzaman, Muhammad; Butola, Ankit; Agarwal, Krishna; Prasad, Dilip Kumar; Melandsø, Frank; Habib, Anowarul.
High-resolution imaging in acoustic microscopy using deep learning. Machine Learning: Science and Technology 2024 ;Volume 5.(1) p. -
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2023
2 Acuna Maldonado, Sebastian Andres; Agarwal, Krishna.
MUSICAL – a versatile computational nanoscopy approach. European Summit On Laser Optics & Photonics Technology (ELOPS 2023),; 2023-09-25 - 2023-11-27
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3 Acuna Maldonado, Sebastian Andres; Agarwal, Krishna.
MUSICAL – a versatile super-resolution microscopy solution for gentle imaging of physical characteristics of biological samples. 4th International Conference On Optics, Photonics, And Lasers; 2023-12-04 - 2023-12-07
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4 Acuna Maldonado, Sebastian Andres; Agarwal, Krishna.
MUSI-tAF: Autofluorescence-based Super-Resolution of Collagen Fibrils in Fixed Tissues for Density Estimation. Focus on Microscopy (FOM) 2023; 2023-04-03 - 2023-10-06
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5 Acuna Maldonado, Sebastian Andres; Opstad, Ida Sundvor; Villegas Hernandez, Luis Enrique; Ahluwalia, Balpreet Singh; Agarwal, Krishna.
MUSICAL: a family of computational techniques for fluorescence nanoscopy. Focus on Microscopy; 2023-04-02 - 2023-04-05
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6 Acuna Maldonado, Sebastian Andres; Villegas Hernandez, Luis Enrique; Opstad, Ida Sundvor; Tinguely, Jean-Claude; Ahluwalia, Balpreet Singh; Agarwal, Krishna.
MUSICAL: results on chip nanoscopy. Focus on Microscopy; 2023-04-02 - 2023-04-05
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7 Punnakkal, Abhinanda Ranjit; Jadhav, Suyog Sakhahari; Agarwal, Krishna; Horsch, Ludwig Alexander; Prasad, Dilip Kumar.
MiShape: 3D Shape Modelling of Mitochondria in Microscopy. arXiv.org 2023
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8 Agarwal, Rohit; Butola, Ankit; Horsch, Ludwig Alexander; Prasad, Dilip Kumar; Agarwal, Krishna.
Taxonomy of hybridly polarized Stokes vortex beams. arXiv.org 2023
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9 Banerjee, Pragyan; Mishra, Sibasish; Yadav, Nitin; Agarwal, Krishna; Melandsø, Frank; Prasad, Dilip Kumar; Habib, Anowarul.
Image inpainting in acoustic microscopy. AIP Advances 2023 ;Volume 13.(4) p. -
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10 Bhatt, Sunil; Butola, Ankit; Acuna Maldonado, Sebastian Andres; Hansen, Daniel Henry; Tinguely, Jean-Claude; Singh Mehta, Dalip; Ahluwalia, Balpreet Singh; Agarwal, Krishna.
Quantitative phase imaging for tracing the motion of waveguide trapped bead particle. SPIE BiOS, 2023; 2023-01-28 - 2023-01-29
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11 Bhatt, Sunil; Butola, Ankit; Kumar, Anand; Thapa, Pramila; Joshi, Akshay; Jadhav, Suyog S.; Singh, Neetu; Prasad, Dilip K.; Agarwal, Krishna; Mehta, Dalip Singh.
Single-shot multispectral quantitative phase imaging of biological samples using deep learning. Applied Optics 2023 ;Volume 62.(15) p. 3989-3999
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12 Butola, Ankit; Acuna Maldonado, Sebastian Andres; Hansen, Daniel Henry; Agarwal, Krishna.
Multiscale resolution in Structured illumination microscopy. Focus on Microscopy; 2023-04-02 - 2023-04-05
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13 Ghosh, Biswajoy; Agarwal, Krishna.
GelMA Hydrogel Mechanics Affect the Collective Migration of Fibroblast Cells. Tissue Engineering International and Regenerative Medicine International Society; 2023-03-27 - 2023-03-31
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14 Ghosh, Biswajoy; Agarwal, Krishna.
Viewing life without labels under optical microscopes. Communications Biology 2023 ;Volume 6.(1) p. -
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15 Ghosh, Biswajoy; Andreassen Fenton, Kristen; Agarwal, Krishna.
Gradient Light Interface Microscopy for Labelfree Detection of Early Changes in kidney Cells Embedded in a Soft and Stiff Hydrogel Matrix. Focus on Microscopy; 2023-04-03 - 2023-04-06
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16 Godtliebsen, Gustav; Larsen, Kenneth Bowitz; Bhujabal, Zambarlal Babanrao; Opstad, Ida Sundvor; Nager Grifo, Mireia; Punnakkal, Abhinanda Ranjit; Kalstad, Trine; Olsen, Randi; Lund, trine; Prasad, Dilip K.; Agarwal, Krishna; Myrmel, Truls; Birgisdottir, Åsa birna.
High-resolution visualization and assessment of basal and OXPHOS-induced mitophagy in H9c2 cardiomyoblasts. Autophagy 2023 p. -
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17 Opstad, Ida Sundvor; Acuna Maldonado, Sebastian Andres; Birgisdottir, Åsa birna; Ahluwalia, Balpreet Singh; Agarwal, Krishna.
From super-resolution imaging to cellular dynamics. Focus on microscopy; 2023-04-02 - 2023-04-05
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18 Opstad, Ida Sundvor; Acuna Maldonado, Sebastian Andres; Ströhl, Stefan; Ströhl, Florian; Ahluwalia, Balpreet Singh; Agarwal, Krishna.
Blind reconstruction of challenging raw data outperforms commercial 3DSIM. Focus on microscopy; 2023-06-02 - 2023-06-05
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19 Opstad, Ida Sundvor; Acuna Maldonado, Sebastian Andres; Ströhl, Stefan; Ströhl, Florian; Ahluwalia, Balpreet Singh; Agarwal, Krishna.
Blind reconstruction of challenging raw data outperforms commercial 3DSIM. Focus on microscopy; 2023-04-02 - 2023-04-05
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20 Punnakkal, Abhinanda Ranjit; Godtliebsen, Gustav; Somani, Ayush; Acuna Maldonado, Sebastian Andres; Birgisdottir, Åsa birna; Prasad, Dilip K.; Horsch, Alexander; Agarwal, Krishna.
Analyzing Mitochondrial Morphology Through Simulation Supervised Learning. Journal of Visualized Experiments 2023 ;Volume 2023.(193) p. -
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21 Qin, Yingying; Butola, Ankit; Agarwal, Krishna.
Full-wave multiple-scattering forward modeling for conventional label-free microscope. Focus on Microscopy; 2023-04-02 - 2023-04-05
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22 Qin, Yingying; Agarwal, Krishna.
3D Full Wave Electromagnetic Modeling of Label-free Optical Microscopes. General Assembly of URSI (URSI GASS 2023); 2023-08-18 - 2023-08-26
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23 Qin, Yingying; Butola, Ankit; Agarwal, Krishna.
3D Full Wave Electromagnetic Modeling of Label-free Optical Microscopes. PhotonIcs & Electromagnetics Research Symposium, PIERS 2023; 2023-07-03 - 2023-07-06
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24 Qin, Yingying; Butola, Ankit; Agarwal, Krishna.
3D full-wave multi-scattering forward solver for coherent microscopes. Optics Express 2023 ;Volume 31.(9) p. 15015-15034
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25 Qin, Yingying; Butola, Ankit; Agarwal, Krishna.
3D refractive index reconstruction from phaseless coherent optical microscopy data using multiple scattering-based inverse solvers—a study. Inverse Problems 2023 ;Volume 40.(1) p. -
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26 Somani, Ayush; Banerjee, Pragyan; Rastogi, Manu; Habib, Anowarul; Agarwal, Krishna; Prasad, Dilip Kumar.
Image Inpainting With Hypergraphs for Resolution Improvement in Scanning Acoustic Microscopy. IEEE Computer Society Conference on Computer Vision and Pattern Recognition Workshops (CVPRW) 2023 p. 3113-3122
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27 Tinguely, Jean-Claude; Dubey, Vishesh Kumar; Acuna Maldonado, Sebastian Andres; Opstad, Ida Sundvor; Villegas Hernandez, Luis Enrique; Ströhl, Florian; Agarwal, Krishna; Ahluwalia, Balpreet Singh.
Integrated optical circuits for multimodal super-resolution microscopy. Norwegian Physics Meeting; 2023-08-09 - 2023-08-11
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28 Villegas Hernandez, Luis Enrique; Dubey, Vishesh Kumar; Acuna Maldonado, Sebastian Andres; Mao, Hong; Tinguely, Jean-Claude; Agarwal, Krishna; Ahluwalia, Balpreet Singh.
Photonic chip: a high-throughput multimodal nanoscopy platform for histopathology. Focus on Microscopy (FOM); 2023-04-02 - 2023-04-05
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2022
29 Agarwal, Rohit; Agarwal, Krishna; Horsch, Alexander; Prasad, Dilip K..
Auxiliary Network: Scalable and agile online learning for dynamic system with inconsistently available inputs. International Conference on Neural Information Processing (ICONIP); 2022-11-22 - 2022-11-26
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30 Butola, Ankit; Acuna Maldonado, Sebastian Andres; Hansen, Daniel Henry; Agarwal, Krishna.
Scalable-resolution structured illumination microscopy. Optics Express 2022 ;Volume 30.(24) p. 43752-43767
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31 Butola, Ankit; Coucheron, David Andre; Szafranska, Karolina; Ahmad, Azeem; Mao, Hong; Tinguely, Jean-Claude; McCourt, Peter Anthony; Senthilkumaran, Paramasivam; Mehta, Dalip Singh; Agarwal, Krishna; Ahluwalia, Balpreet Singh.
Quantitative phase imaging and on-chip nanoscopy for 3D imaging of liver sinusoidal endothelial cells. Digital Holography and 3-D Imaging 2022; 2022-08-01 - 2022-08-04
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32 Villegas, Luis; Dubey, Vishesh Kumar; Nystad, Mona; Fenton, Kristin Andreassen; Acharya, Ganesh; Mateos, Jose M.; Agarwal, Krishna; Ahluwalia, Balpreet Singh.
Chip-based multimodal microscopy for histological investigations of cryopreserved tissue sections. Physics Seminar; 2022-02-24 - 2022-02-24
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33 Jayakumar, Nikhil; Dullo, Firehun Tsige; Dubey, Vishesh Kumar; Ahmad, Azeem; Ströhl, Florian; Cauzzo, Jennifer; Mazagao Guerreiro, Eduarda; Snir, Omri; Skalko-Basnet, Natasa; Agarwal, Krishna; Ahluwalia, Balpreet Singh.
Erratum: Multi-moded high-index contrast optical waveguide for super-contrast high-resolution label-free microscopy (Nanophotonics DOI: 10.1515/nanoph-2022-0500.pdf). Nanophotonics 2022 p. -
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34 Jayakumar, Nikhil; Dullo, Firehun Tsige; Dubey, Vishesh Kumar; Ahmad, Azeem; Ströhl, Florian; Cauzzo, Jennifer; Mazagao Guerreiro, Eduarda; Snir, Omri; Skalko-Basnet, Natasa; Agarwal, Krishna; Ahluwalia, Balpreet Singh.
Multi-moded high-index contrast optical waveguide for super-contrast high-resolution label-free microscopy. Nanophotonics 2022 ;Volume 11.(15) p. 3421-3436
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35 Kumar, Prakhar; Yadav, Nitin; Shamsuzzaman, Muhammad; Agarwal, Krishna; Melandsø, Frank; Habib, Anowarul.
Numerical method for tilt compensation in scanning acoustic microscopy. Measurement 2022 ;Volume 187.(110306) p. -
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36 Liu, Zicheng; Roy, Mayank; Prasad, Dilip K.; Agarwal, Krishna.
Physics-Guided Loss Functions Improve Deep Learning Performance in Inverse Scattering. IEEE Transactions on Computational Imaging 2022 ;Volume 8. p. 236-245
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37 Opstad, Ida Sundvor; Godtliebsen, Gustav; Ahluwalia, Balpreet Singh; Myrmel, Truls; Agarwal, Krishna; Birgisdottir, Åsa birna.
Mitochondrial dynamics and quantification of mitochondria-derived vesicles (MDVs) in cardiomyoblasts using 3DSIM. Focus on Microscopy 2022; 2022-04-10 - 2022-04-13
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38 Opstad, Ida Sundvor; Godtliebsen, Gustav; Ahluwalia, Balpreet Singh; Myrmel, Truls; Agarwal, Krishna; Birgisdottir, Åsa birna.
Quantification of mitochondria‐derived vesicles in cardiomyoblasts using 3DSIM & machine learning-based segmentation. European Light Microscopy Initiative Meeting; 2022-06-06 - 2022-06-10
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39 Opstad, Ida Sundvor; Godtliebsen, Gustav; Ströhl, Florian; Myrmel, Truls; Ahluwalia, Balpreet Singh; Agarwal, Krishna; Birgisdottir, Åsa birna.
Three-dimensional structured illumination microscopy data of mitochondria and lysosomes in cardiomyoblasts under normal and galactose-adapted conditions. Scientific Data 2022 ;Volume 9.(1) p. -
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40 Opstad, Ida Sundvor; Hansen, Daniel Henry; Acuna Maldonado, Sebastian Andres; Ströhl, Florian; Priyadarshi, Anish; Tinguely, Jean-Claude; Dullo, Firehun Tsige; Seternes, Tore; Dalmo, Roy Ambli; Ahluwalia, Balpreet Singh; Agarwal, Krishna.
Large area super-resolution TIRFM of arctic fish species. Focus on Microscopy 2022; 2022-04-10 - 2022-04-13
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41 Opstad, Ida Sundvor; Wolfson, Deanna; Ahluwalia, Balpreet Singh; Agarwal, Krishna; Seternes, Tore; Dalmo, Roy Ambli.
Diving into fish skin: understanding cell avalanches and migrating keratocytes. Focus on Microscopy; 2022-04-10 - 2022-04-13
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42 Somani, Ayush; Sekh, Arif Ahmed; Opstad, Ida Sundvor; Birgisdottir, Åsa birna; Myrmel, Truls; Ahluwalia, Balpreet Singh; Horsch, Alexander; Agarwal, Krishna; Prasad, Dilip K..
Virtual labeling of mitochondria in living cells using correlative imaging and physics-guided deep learning. Biomedical Optics Express 2022 ;Volume 13.(10) p. 5495-5516
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43 Tinguely, Jean-Claude; Opstad, Ida Sundvor; Acuña, Sebastian; Villegas-Hernandez, Luis E.; Dubey, Vishesh; Ströhl, Florian; Agarwal, Krishna; Ahluwalia, Balpreet Singh.
Integrated photonics for super-resolution microscopy. Advanced Photonics Congress 2022; 2022-07-24 - 2022-07-28
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44 Villegas, Luis; Dubey, Vishesh Kumar; Nystad, Mona; Tinguely, Jean-Claude; Coucheron, David Andre; Dullo, Firehun Tsige; Priyadarshi, Anish; Acuna Maldonado, Sebastian Andres; Ahmad, Azeem; Mateos, Jose M.; Barmettler, Gery; Ziegler, Urs; Birgisdottir, Åsa Birna; Hovd, Aud-Malin Karlsson; Fenton, Kristin Andreassen; Acharya, Ganesh; Agarwal, Krishna; Ahluwalia, Balpreet Singh.
Chip-based multimodal super-resolution microscopy for histological investigations of cryopreserved tissue sections. Light: Science & Applications (LSA) 2022
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2021
45 Acuña Maldonado, Sebastian Andres; Agarwal, Krishna.
Autothresholding in MUSICAL using non-orthogonal signal-noise separation. URSI GASS 2021; 2021-08-28 - 2021-09-04
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46 Acuna Maldonado, Sebastian Andres; ROY, MAYANK; Villegas, Luis; Dubey, Vishesh Kumar; Ahluwalia, Balpreet Singh; Agarwal, Krishna.
Deriving high contrast fluorescence microscopy images through low contrast noisy image stacks. Biomedical Optics Express 2021 ;Volume 12.(9) p. 5529-5543
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47 Agarwal, Krishna.
New publication: Myth-bursting work on microscopy. digitallifenorway.org 2021
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48 Agarwal, Krishna.
Welcome to Arctic Optica Student Chapter and ongoing image contest. digitallifenorway.org 2021
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49 Agarwal, Krishna; Acuña Maldona, Sebastian Andres.
New publication: New chip-based microscopy technique enables super-resolution images over large areas to be captured of salmon skin cells. digitallifenorway.org 2021
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50 Agarwal, Krishna; Acuña Maldona, Sebastian Andres.
New publication: Use of deep learning to improve quality of nanoscopy images. digitallifenorway.org 2021
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