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Showing results 1-24 of 24
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2022
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Dahal-Koirala, Shiva; Balaban, Gabriel; Neumann, Ralf Stefan; Scheffer, Lonneke; Lundin, Knut; Greiff, Victor; Sollid, Ludvig Magne; Qiao, Shuo-Wang; Sandve, Geir Kjetil Ferkingstad. TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences. Briefings in Bioinformatics 2022 ;Volume 23.(2) p. 1-14 OUS UiO
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2021
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Dahal-Koirala, Shiva; Risnes, Louise Fremgaard; Neumann, Ralf Stefan; Christophersen, Asbjørn; Lundin, Knut E. A.; Sandve, Geir Kjetil; Qiao, Shuo-Wang; Sollid, Ludvig M.. Comprehensive Analysis of CDR3 Sequences in Gluten-Specific T-Cell Receptors Reveals a Dominant R-Motif and Several New Minor Motifs. Frontiers in Immunology 2021 ;Volume 12:639672. p. 1-13 UiO OUS
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Eggesbø, Linn Margrethe; Risnes, Louise Fremgaard; Neumann, Ralf Stefan; Lundin, Knut E. A.; Christophersen, Asbjørn Otto; Sollid, Ludvig Magne. Single-cell TCR repertoire analysis reveals highly polyclonal composition of human intraepithelial CD8<sup>+</sup> αβ T lymphocytes in untreated celiac disease. European Journal of Immunology 2021 ;Volume 51.(6) p. 1542-1545 UiO OUS
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Risnes, Louise Fremgaard; Eggesbø, Linn Margrethe; Zühlke, Stephanie; Dahal-Koirala, Shiva; Neumann, Ralf Stefan; Lundin, Knut Erik Aslaksen; Christophersen, Asbjørn; Sollid, Ludvig Magne. Circulating CD103+ γδ and CD8+ T cells are clonally shared with tissue-resident intraepithelial lymphocytes in celiac disease. Mucosal Immunology 2021 ;Volume 14.(4) p. 842-851 UiO OUS
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Yao, Ying; Zia, Asima; Neumann, Ralf Stefan; Pavlović, Milena; Balaban, Gabriel; Lundin, Knut Erik Aslaksen; Sandve, Geir Kjetil; Qiao, Shuo Wang. T cell receptor repertoire as a potential diagnostic marker for celiac disease. Clinical Immunology 2021 ;Volume 222:108621. p. 1-7 UiO
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2020
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Ting, Yi Tian; Dahal-Koirala, Shiva; Kim, Hui Shi Keshia; Qiao, Shuo Wang; Neumann, Ralf Stefan; Lundin, Knut Erik Aslaksen; Petersen, Jan; Reid, Hugh H.; Sollid, Ludvig Magne; Rossjohn, Jamie. A molecular basis for the T cell response in HLA-DQ2.2 mediated celiac disease. Proceedings of the National Academy of Sciences of the United States of America 2020 ;Volume 117.(6) p. 3063-3073 UiO OUS
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2019
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Bartolomé Casado, Raquel; Landsverk, Ole J. B.; Chauhan, Sudhir Kumar; Richter, Lisa Maria; Phung, Danh; Greiff, Victor; Risnes, Louise Fremgaard; Yao, Ying; Neumann, Ralf Stefan; Yaqub, Sheraz; Øyen, Ole; Horneland, Rune; Aandahl, Einar Martin; Paulsen, Vemund; Sollid, Ludvig Magne; Qiao, Shuo Wang; Bækkevold, Espen Sønderaal; Jahnsen, Frode Lars. Resident memory CD8 T cells persist for years in human small intestine. Journal of Experimental Medicine (JEM) 2019 ;Volume 216.(10) p. 2412-2426 UiO OUS
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Dahal-Koirala, Shiva; Neumann, Ralf Stefan; Jahnsen, Jørgen; Lundin, Knut Erik Aslaksen; Sollid, Ludvig Magne. On the immune response to barley in celiac disease: Biased and public T-cell receptor usage to a barley unique and immunodominant gluten epitope. European Journal of Immunology 2019 p. 1-14 UiO OUS AHUS
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Eggesbø, Linn Margrethe; Risnes, Louise Fremgaard; Neumann, Ralf Stefan; Lundin, Knut Erik Aslaksen; Christophersen, Asbjørn; Sollid, Ludvig Magne. Single-cell TCR sequencing of gut intraepithelial γδ T cells reveals a vast and diverse repertoire in celiac disease. Mucosal Immunology 2019 p. 1-9 UiO OUS
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Iversen, Rasmus; Roy, Bishnudeo; Stamnæs, Jorunn; Høydahl, Lene Støkken; Hnida, Kathrin; Neumann, Ralf Stefan; Korponay-Szabó, Ilma R.; Lundin, Knut Erik Aslaksen; Sollid, Ludvig Magne. Efficient T cell–B cell collaboration guides autoantibody epitope bias and onset of celiac disease. Proceedings of the National Academy of Sciences of the United States of America 2019 ;Volume 116.(30) p. 15134-15139 UiO OUS
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2018
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Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Haraldsen, Arthur Alexander Blørstad; Tarver, James E.; Suga, Hiroshi; Donoghue, Philip C.J.; Peterson, Kevin J.; Ruiz-Trillo, Iñaki; Grini, Paul Eivind; Shalchian-Tabrizi, Kamran. Unicellular origin of the animal microRNA machinery. Current Biology 2018 ;Volume 28.(20) p. 3288-3295.e5 UiO OUS
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Dahal-Koirala, Shiva; Ciacchi, Laura; Petersen, Jan; Risnes, Louise Fremgaard; Neumann, Ralf Stefan; Christophersen, Asbjørn; Lundin, Knut Erik Aslaksen; Reid, Hugh H.; Qiao, Shuo Wang; Rossjohn, Jamie; Sollid, Ludvig Magne. Discriminative T-cell receptor recognition of highly homologous HLA-DQ2-bound gluten epitopes. Journal of Biological Chemistry 2018 ;Volume 294.(3) p. 941-952 UiO OUS
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Gunnarsen, Kristin Støen; Høydahl, Lene Støkken; Neumann, Ralf Stefan; Bjerregaard-Andersen, Kaare; Nilssen, Nicolay Rustad; Sollid, Ludvig Magne; Sandlie, Inger; Løset, Geir Åge. Soluble T-cell receptor design influences functional yield in an E. coli chaperone-assisted expression system. PLOS ONE 2018 ;Volume 13:e0195868.(4) p. 1-15 OUS UiO
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Risnes, Louise Fremgaard; Christophersen, Asbjørn; Dahal-Koirala, Shiva; Neumann, Ralf Stefan; Sandve, Geir Kjetil; Sarna, Vikas Kumar; Lundin, Knut Erik Aslaksen; Qiao, Shuo Wang; Sollid, Ludvig Magne. Disease-driving CD4+ T cell clonotypes persist for decades in celiac disease. Journal of Clinical Investigation 2018 ;Volume 128.(6) p. 2642-2650 UiO OUS
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2017
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Gunnarsen, Kristin Støen; Høydahl, Lene Støkken; Risnes, Louise Fremgaard; Dahal-Koirala, Shiva; Neumann, Ralf Stefan; Bergseng, Elin; Frigstad, Terje; Frick, Rahel; du Pré, Marie Fleur; Dalhus, Bjørn; Lundin, Knut Erik Aslaksen; Qiao, Shuo Wang; Sollid, Ludvig Magne; Sandlie, Inger; Løset, Geir Åge. A TCRα framework–centered codon shapes a biased T cell repertoire through direct MHC and CDR3β interactions. JCI Insight 2017 ;Volume 2.(17) UiO OUS
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Roy, Bishnudeo; Neumann, Ralf Stefan; Snir, Omri; Iversen, Rasmus; Sandve, Geir Kjetil; Lundin, Knut Erik Aslaksen; Sollid, Ludvig Magne. High-Throughput Single-Cell Analysis of B Cell Receptor Usage among Autoantigen-Specific Plasma Cells in Celiac Disease. Journal of Immunology 2017 ;Volume 199.((2)) p. 782-791 UiO OUS
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2016
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Haraldsen, Arthur Alexander Blørstad; Bråte, Jon; Neumann, Ralf Stefan; Fromm, Bastian; Grini, Paul Eivind; Shalchian-Tabrizi, Kamran. Pre-metazoan origin of animal microRNAs. European Society of Evolutionary Developmental Biology; 2016-07-26 - 2016-07-29 UiO
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2015
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Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad; Shalchian-Tabrizi, Kamran. Expanding our knowledge about parasites using PATHOS-DB (The PArasiTe–HOSt-DataBase). VII European Congress of Protistology; 2015-09-05 - 2015-09-10 UiO
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Bjorbækmo, Marit Markussen; Neumann, Ralf Stefan; Haraldsen, Arthur Alexander Blørstad; Shalchian-Tabrizi, Kamran. HIDDEN PROTIST PARASITES: HOW CAN THEY BE DETECTED?. 2015 Aquatic Sciences Meeting - Aquatic Sciences: Global And Regional Perspectives — North Meets South;; 2015-02-22 - 2015-02-27 UiO
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Bråte, Jon; Adamski, Marcin; Neumann, Ralf Stefan; Shalchian-Tabrizi, Kamran; Adamska, Maja. Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum. Proceedings of the Royal Society of London. Biological Sciences 2015 ;Volume 282.(1821) p. 1-9 UiB UiO
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Kumar, Surendra; Krabberød, Anders Kristian; Neumann, Ralf Stefan; Michalickova, Katerina; Zhao, Sen; Zhang, Xiaoli; Shalchian-Tabrizi, Kamran. BIR pipeline for preparation of phylogenomic data. Evolutionary Bioinformatics 2015 ;Volume 11. p. 79-83 OUS UiO
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2014
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Neumann, Ralf Stefan; Kumar, Surendra; Haverkamp, Thomas Hendricus Augustus; Shalchian-Tabrizi, Kamran. BLASTGrabber: A bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data. BMC Bioinformatics 2014 ;Volume 15.(128) p. - UiO AHUS
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Neumann, Ralf Stefan; Kumar, Surendra; Shalchian-Tabrizi, Kamran. BLAST output visualization in the new sequencing era. Briefings in Bioinformatics 2014 ;Volume 15.(4) p. 484-503 UiO
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2011
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Høydahl, Lene Støkken; Neumann, Ralf Stefan; Qiao, Shuo Wang; Sollid, Ludvig Magne; Sandlie, Inger; Løset, Geir Åge. Development of a High Affinity TCR Reagent by Phage Display to Study Antigen Presentation in Celiac Disease. Scandinavian Journal of Immunology 2011 ;Volume 73.(4) p. 372-372 UiO
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