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2023
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| 1. | Chen, Jiaoyan; He, Yuan; Geng, Yuxia; Jimenez-Ruiz, Ernesto; Dong, Hang; Horrocks, Ian. Contextual semantic embeddings for ontology subsumption prediction. World wide web (Bussum) 2023 p. - UiO |
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| 2. | He, Yuan; Chen, Jiaoyan; Jimenez-Ruiz, Ernesto; Dong, Hang; Horrocks, Ian. Language Model Analysis for Ontology Subsumption Inference. arXiv.org 2023 UiO |
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2022
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| 3. | Chen, Jiaoyan; He, Yuan; Geng, Yuxia; Jimenez-Ruiz, Ernesto; Dong, Hang; Horrocks, Ian. Contextual Semantic Embeddings for Ontology Subsumption Prediction. UK: arXivLabs 2022 1 p. UiO |
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| 4. | d’Avila Garcez, Artur; Jimenez-Ruiz, Ernesto. Preface. CEUR Workshop Proceedings 2022 ;Volume 3212. p. - UiO |
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| 5. | He, Yuan; Chen, Jiaoyan; Dong, Hang; Jimenez-Ruiz, Ernesto; Hadian, Ali; Horrocks, Ian. Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching. Lecture Notes in Computer Science (LNCS) 2022 ;Volume 13489. p. 575-591 UiO |
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| 6. | He, Yuan; Chen, Jiaoyan; Dong, Hang; Jimenez-Ruiz, Ernesto; Hadian, Ali; Horrocks, Ian. Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching. UK: arXivLabs 2022 1 p. UiO |
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| 7. | Horrocks, Ian; He, Yuan; Chen, Jiaoyan; Jimenez-Ruiz, Ernesto; Hadian, Ali. Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching. The Semantic Web –International Semantic Web Conference (ISWC) 2022; 2022-10-16 UiO |
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| 8. | Matentzoglu, Nicolas; Balhoff, James P.; Bello, Susan M.; Bizon, Chris; Brush, Matthew; Callahan, Tiffany J.; Chute, Christopher G.; Duncan, William D.; Evelo, Chris T.; Gabriel, Davera; Graybeal, John; Gray, Alasdair; Gyori, Benjamin M.; Haendel, Melissa; Harmse, Henriette; Harris, Nomi L.; Harrow, Ian; Hegde, Harshad B.; Hoyt, Amelia L.; Hoyt, Charles T.; Jiao, Dazhi; Jimenez-Ruiz, Ernesto; Jupp, Simon; Kim, Hyeongsik; Koehler, Sebastian; Liener, Thomas; Long, Qinqin; Malone, James; McLaughlin, James A.; McMurry, Julie A.; Moxon, Sierra; Munoz-Torres, Monica C.; Osumi-Sutherland, David; Overton, James A.; Peters, Bjoern; Putman, Tim; Queralt-Rosinach, Núria; Shefchek, Kent; Solbrig, Harold; Thessen, Anne; Tudorache, Tania; Vasilevsky, Nicole; Wagner, Alex H.; Mungall, Christopher J.. A Simple Standard for Sharing Ontological Mappings (SSSOM). Database: The Journal of Biological Databases and Curation 2022 ;Volume 2022. p. - UiO |
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| 9. | Petricek, Tomas; van den Burg, Gerrit J. J.; Nazábal, Alfredo; Ceritli, Taha; Jimenez-Ruiz, Ernesto; Williams:, Christopher K. I.. AI Assistants: A Framework for Semi-Automated Data Wrangling. IEEE Transactions on Knowledge and Data Engineering 2022 ;Volume 35.(9) p. 9295-9306 UiO |
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| 10. | Rasouli, Peyman; Yu, Ingrid Chieh; Jimenez-Ruiz, Ernesto. Interpreting Categorical Data Classifiers using Explanation-based Locality. IEEE International Conference on Data Mining Workshops, ICDMW 2022 p. 163-170 UiO |
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| 11. | Zheng, Zhuoxun; Zhou, Baifan; Zhou, Dongzhuoran; Cheng, Gong; Jimenez-Ruiz, Ernesto; Soylu, Ahmet; Kharlamov, Evgeny. Executable Knowledge Graphs for Machine Learning: A Bosch Case of Welding Monitoring. The 21st International Semantic Web Conference (ISWC); 2022-10-23 - 2022-10-27 UiO OSLOMET |
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| 12. | Zheng, Zhuoxun; Zhou, Baifan; Zhou, Dongzhuoran; Cheng, Gong; Jimenez-Ruiz, Ernesto; Soylu, Ahmet; Kharlamov, Evgeny. Query-Based Industrial Analytics over Knowledge Graphs with Ontology Reshaping. Lecture Notes in Computer Science (LNCS) 2022 ;Volume 13384. p. 123-128 OSLOMET UiO |
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| 13. | Zhou, Baifan; Zheng, Zhuoxun; Zhou, Dongzhuoran; Cheng, Gong; Jimenez-Ruiz, Ernesto; Trung-Kien, Tran; Stepanova, Daria; Gad-Elrab, Mohamed H.; Nikolov, Nikolay; Soylu, Ahmet; Kharlamov, Evgeny. The Data Value Quest: A Holistic Semantic Approach at Bosch. Lecture Notes in Computer Science (LNCS) 2022 ;Volume 13384. p. 287-290 OSLOMET SINTEF NTNU UiO |
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| 14. | Zhou, Dongzhuoran; Zhou, Baifan; Zheng, Zhuoxun; Kostylev, Egor; Cheng, Gong; Jimenez-Ruiz, Ernesto; Soylu, Ahmet; Kharlamov, Evgeny. Enhancing Knowledge Graph Generation with Ontology Reshaping – Bosch Case. Lecture Notes in Computer Science (LNCS) 2022 ;Volume 13384. p. 299-302 OSLOMET UiO |
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| 15. | Zhou, Dongzhuoran; Zhou, Baifan; Zheng, Zhuoxun; Soylu, Ahmet; Cheng, Gong; Jimenez-Ruiz, Ernesto; Kostylev, Egor; Kharlamov, Evgeny. Ontology Reshaping for Knowledge Graph Construction: Applied on Bosch Welding Case. The 21st International Semantic Web Conference (ISWC); 2022-10-23 - 2022-10-27 UiO OSLOMET |
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2021
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| 16. | Avogadro, Roberto; Cremaschi, Marco; Jimenez-Ruiz, Ernesto; Rula, Anisa. A Framework for Quality Assessment of Semantic Annotations of Tabular Data. Lecture Notes in Computer Science (LNCS) 2021 ;Volume 12922. UiO |
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| 17. | Chen, Jiaoyan; Hu, Pan; Jimenez-Ruiz, Ernesto; Holter, Ole Magnus; Antonyrajah, Denvar; Horrocks, Ian. OWL2Vec*: embedding of OWL ontologies. Machine Learning 2021 ;Volume 110.(7) p. 1813-1845 UiO |
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| 18. | Chen, Jiaoyan; Jimenez-Ruiz, Ernesto; Horrocks, Ian; Antonyrajah, Denvar; Hadian, Ali; Lee, Jaehun. Augmenting Ontology Alignment by Semantic Embedding and Distant Supervision. Lecture Notes in Computer Science (LNCS) 2021 ;Volume 12731. UiO |
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| 19. | Chen, Jiaoyan; Jimenez-Ruiz, Ernesto; Horrocks, Ian; Chen, Xi; Myklebust, Erik Bryhn. An assertion and alignment correction framework for large scale knowledge bases. Semantic Web Journal 2021 ;Volume 14.(1) p. 29-53 NIVA UiO |
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| 20. | d’Avila Garcez, Artur; Jimenez-Ruiz, Ernesto. Preface. CEUR Workshop Proceedings 2021 ;Volume 2986. p. - UiO |
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| 21. | Jimenez-Ruiz, Ernesto. Ontology Alignment and the two DLs (Keynote). 34th International Workshop on Description Logics; 2021-09-19 - 2021-09-22 UiO |
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| 22. | Myklebust, Erik Bryhn; Jimenez-Ruiz, Ernesto; Chen, Jiaoyan; Wolf, Raoul; Tollefsen, Knut Erik. Prediction of adverse biological effects of chemicals using knowledge graph embeddings. Semantic Web Journal 2021 ;Volume 13.(3) p. 299-338 NMBU NIVA UiO |
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2020
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| 23. | Chen, Jiaoyan; Chen, Xi; Horrocks, Ian; Myklebust, Erik Bryhn; Jimenez-Ruiz, Ernesto. Correcting Knowledge Base Assertions. I: WWW '20: Proceedings of The Web Conference 2020. Association for Computing Machinery (ACM) 2020 ISBN 978-1-4503-7023-3. p. 1537-1547 NIVA UiO |
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| 24. | Cutrona, Vincenzo; Bianchi, Federico; Jimenez-Ruiz, Ernesto; Palmonari, Matteo. Tough Tables: Carefully Evaluating Entity Linking for Tabular Data. Lecture Notes in Computer Science (LNCS) 2020 ;Volume 12507. p. 328-343 UiO |
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| 25. | Faria, Daniel; Ferrara, Alfio; Jimenez-Ruiz, Ernesto; Montanelli, Stefano; Pesquita, Catia. Crowd-assessing quality in uncertain data linking datasets. Knowledge engineering review (Print) 2020 ;Volume 35. p. - UiO |
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| 26. | Jimenez-Ruiz, Ernesto; Agibetov, Asan; Chen, Jiaoyan; Samwald, Matthias; Cross, Valerie. Dividing the ontology alignment task with semantic embeddings and logic-based modules. Frontiers in Artificial Intelligence and Applications 2020 ;Volume 325. p. 784-791 UiO |
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| 27. | Jimenez-Ruiz, Ernesto; Hassanzadeh, Oktie; Efthymiou, Vasilis; Chen, Jiaoyan; Srinivas, Kavitha. SemTab 2019: Resources to Benchmark Tabular Data to Knowledge Graph Matching Systems. Lecture Notes in Computer Science (LNCS) 2020 ;Volume 12123. p. 514-530 UiO |
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| 28. | Jimenez-Ruiz, Ernesto; Pene, Irina; Stahl, Oliver; Latif, Adnan; Paula, Rogerio Abreu de; Waaler, Arild Torolv Søetorp; Grimsgaard, Jens. SiriusGeoAnnotator: Ontology-driven Knowledge Graph Population for Geological Image Annotation. SIRIUS https://sws.ifi.uio.no/project/sirius-geo-annotator/ 2020 UiO |
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| 29. | Myklebust, Erik Bryhn; Jimenez-Ruiz, Ernesto; Chen, Jiaoyan; Wolf, Raoul; Tollefsen, Knut-Erik. Ontology alignment in ecotoxicological effect prediction. CEUR Workshop Proceedings 2020 ;Volume 2788. p. 233-234 UiO NMBU NIVA |
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2019
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| 30. | Algergawy, Alsayed; Faria, Daniel; Ferrara, Alfio; Fundulaki, Irini; Harrow, Ian; Hertling, Sven; Jimenez-Ruiz, Ernesto; Karam, Naouel; Khiat, Abderrahmane; Lambrix, Patrick; Li, Huanyu; Montanelli, Stefano; Paulheim, Heiko; Pesquita, Catia; Saveta, Tzanina; Shvaiko, Pavel; Splendiani, Andrea; Thiéblin, Elodie; Trojahn, Cassia; Vataščinová, Jana; Zamazal, Ondrej; Zhou, Lu. Results of the ontology alignment evaluation initiative 2019. CEUR Workshop Proceedings 2019 ;Volume 2536. p. 46-85 UiO |
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| 31. | Chen, Jiaoyan; Jimenez-Ruiz, Ernesto; Horrocks, Ian. Canonicalizing Knowledge Base Literals. Lecture Notes in Computer Science (LNCS) 2019 ;Volume 11778 LNCS. p. 110-127 UiO |
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| 32. | Chen, Jiaoyan; Jimenez-Ruiz, Ernesto; Horrocks, Ian; Sutton, Charles. ColNet: Embedding the Semantics of Web Tables for Column Type Prediction. Proceedings of the AAAI Conference on Artificial Intelligence 2019 ;Volume 30. p. 29-36 UiO |
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| 33. | Chen, Jiaoyan; Jimenez-Ruiz, Ernesto; Horrocks, Ian; Sutton, Charles. Learning semantic annotations for tabular data. IJCAI International Joint Conference on Artificial Intelligence 2019 ;Volume 2019-August. p. 2088-2094 UiO |
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| 34. | Chen, Jiaoyan; Jimenez-Ruiz, Ernesto; Horrocks, Ian; Sutton, Charles A. Learning Semantic Annotations for Tabular Data. I: Proceedings of the Twenty-Eighth International Joint Conference on Artificial Intelligence, {IJCAI} 2019, Macao, China, August 10-16, 2019. : International Joint Conferences on Artificial Intelligence 2019 ISBN 978-0-9992411-4-1. p. 2088-2094 UiO |
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| 35. | Harrow, Ian; Balakrishnan, Rama; Jimenez-Ruiz, Ernesto; Jupp, Simon; Lomax, Jane; Reed, Jane; Romacker, Martin; Senger, Christian; Splendiani, Andrea; Wilson, Jabe; Woollard, Peter. Ontology mapping for semantically enabled applications. Drug Discovery Today 2019 ;Volume 24.(10) p. 2068-2075 UiO |
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| 36. | Holter, Ole Magnus; Myklebust, Erik B; Chen, Jiaoyan; Jimenez-Ruiz, Ernesto. Embedding OWL ontologies with OWL2Vec. CEUR Workshop Proceedings 2019 ;Volume 2456. p. 33-36 UiO NIVA |
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| 37. | Huanyu, Li; Dragisic, Zlatan; Faria, Daniel; Ivanova, Valentina; Jimenez-Ruiz, Ernesto; Lambrix, Patrick; Pesquita, Catia. User validation in ontology alignment: Functional assessment and impact. Knowledge engineering review (Print) 2019 ;Volume 34. p. - UiO |
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| 38. | Jimenez-Ruiz, Ernesto. LogMap Family Participation in the OAEI 2019. I: Proceedings of the 14th International Workshop on Ontology Matching. : CEUR-WS.org 2019 UiO |
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| 39. | Klungre, Vidar Norstein; Soylu, Ahmet; Jimenez-Ruiz, Ernesto; Kharlamov, Evgeny; Giese, Martin. Query Extension Suggestions for Visual Query Systems Through Ontology Projection and Indexing. New generation computing 2019 ;Volume 37.(4) p. 361-392 UiO NTNU |
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| 40. | Myklebust, Erik Bryhn; Jimenez-Ruiz, Ernesto; Chen, Jiaoyan; Wolf, Raoul; Tollefsen, Knut-Erik. Ecotoxicological Effect Prediction Using Knowledge Graph Embedding. SETAC Europe 29th Annual Meeting; 2019-05-26 - 2019-05-30 NIVA NMBU UiO |
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| 41. | Myklebust, Erik Bryhn; Jimenez-Ruiz, Ernesto; Chen, Jiaoyan; Wolf, Raoul; Tollefsen, Knut-Erik. Knowledge Graph Embedding for Ecotoxicological Effect Prediction. I: The Semantic Web – ISWC 2019. Springer 2019 ISBN 978-3-030-30795-0. p. 490-506 NIVA UiO |
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| 42. | Myklebust, Erik Bryhn; Jimenez-Ruiz, Ernesto; Chen, Jiaoyan; Wolf, Raoul; Tollefsen, Knut-Erik. Knowledge Graph Embedding for Ecotoxicological Effect Prediction. 18th International Semantic Web Conference (ISWC 2019); 2019-10-26 - 2019-10-30 UiO NMBU NIVA |
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| 43. | Myklebust, Erik Bryhn; Jimenez-Ruiz, Ernesto; Wolf, Raoul; Rudjord, Zofia Czyczula; Tollefsen, Knut-Erik. Integrating semantic technologies in environmental risk assessment: A vision.. 29th Annual Meeting of the Society of Environmental Toxicology and Chemistry; 2019-05-27 - 2019-05-30 NIVA UiO NMBU |
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| 44. | Shvaiko, Pavel; Euzenat, Jérôme; Jimenez-Ruiz, Ernesto; Hassanzadeh, Oktie; Trojahn, Cassia. Proceedings of the 14th International Workshop on Ontology Matching. : CEUR-WS.org 2019 202 p. CEUR Workshop Proceedings(2536) UiO |
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2018
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| 45. | Agibetov, Asan; Jimenez-Ruiz, Ernesto; Ondrésik, Marta; Solimando, Alessandro; Banerjee, Imon; Guerrini, Giovanna; Catalano, Chiara E; Oliveira, Joaquim M.; Patanè, Giuseppe; Reis, Rui L.; Spagnuolo, Michela. Supporting shared hypothesis testing in the biomedical domain. Journal of Biomedical Semantics 2018 ;Volume 9:9.() p. 1-22 UiO |
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| 46. | Algergawy, Alsayed; Cheatham, Michelle; Faria, Daniel; Ferrara, Alfio; Fundulaki, Irini; Harrow, Ian; Hertling, Sven; Jimenez-Ruiz, Ernesto; Karam, Naouel; Khiat, Abderrahmane; Lambrix, Patrick; Li, Huanyu; Montanelli, Stefano; Paulheim, Heiko; Pesquita, Catia; Saveta, Tzanina; Schmidt, Daniela; Shvaiko, Pavel; Splendiani, Andrea; Thiéblin, Elodie; Trojahn, Cassia; Vataščinová, Jana; Zamazal, Ondrej; Zhou, Lu. Results of the ontology alignment evaluation initiative 2018. CEUR Workshop Proceedings 2018 ;Volume 2288. p. 76-116 UiO |
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| 47. | Jimenez-Ruiz, Ernesto; Agibetov, Asan; Samwald, Matthias; Cross, Valerie. We divide, you conquer: From large-scale ontology alignment to manageable subtasks with a lexical index and neural embeddings. CEUR Workshop Proceedings 2018 ;Volume 2180. p. 1-12 UiO |
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| 48. | Jimenez-Ruiz, Ernesto; Saveta, Tzanina; Zamazal, Ondrej; Hertling, Sven; Roder, Michael; Fundulaki, Irini; Ngomo, Axel-Cyrille Ngonga; Sherif, Mostafa Hashem; Annane, Amina; Bellahsene, Zohra; Ben Yahia, Sadok; Diallo, Gayo; Faria, Daniel; Kachroudi, Marouen; Khiat, Abderrahmane; Lambrix, Patrick; Li, Huanyu; Mackeprang, Maximilian; Mohammadi, Majid; Rybinski, Maciej; Balasubramani, Booma Sowkarthiga; Trojahn, Cassia. Introducing the HOBBIT platform into the Ontology Alignment Evaluation campaign. CEUR Workshop Proceedings 2018 ;Volume 2288. p. 49-60 UiO |
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| 49. | Kharlamov, Evgeny; Skjæveland, Martin G; Hovland, Dag; Mailis, Theofilos; Jimenez-Ruiz, Ernesto; Xiao, Guohui; Soylu, Ahmet; Horrocks, Ian; Waaler, Arild. Finding Data Should be Easier than Finding Oil. I: 2018 IEEE International Conference on Big Data (Big Data), Seattle, 10-13 Dec. 2018. IEEE 2018 ISBN 978-1-5386-5035-6. p. - SINTEF NTNU UiO |
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| 50. | Pinkel, Christoph; Binning, Carsten; Jimenez-Ruiz, Ernesto; Kharlamov, Evgeny; May, Wolfgang; Nikolov, Andriy; Bastinos, Ana Sasa; Skjæveland, Martin G; Solimando, Alessandro; Taheriyan, Mohsen; Heupel, Christian; Horrocks, Ian. RODI: Benchmarking Relational-to-Ontology Mapping Generation Quality. Semantic Web Journal 2018 ;Volume 9.(1) p. 25-52 UiO |
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