Cristin

2020
1.	Barzine, Mitra Parissa; Freivalds, Karlis; Wright, James C.; Opmanis, Mārtiņš; Rituma, Darta; Zamanzad Ghavidel, Fatemeh; Jarnuczak, Andrew F.; Celms, Edgars; Čerāns, Kārlis; Jonassen, Inge; Lace, Lelde; Antonio Vizcaíno, Juan; Choudhary, Jyoti Sharma; Brazma, Alvis; Viksna, Juris. Using Deep Learning to Extrapolate Protein Expression Measurements. Proteomics 2020 ;Volum 20.(21-22) s. - UiB Untitled

2.	Bösl, Korbinian; Ghavidel, Fatemeh; Tekle, Kidane M; Kleppe, Rune; Hjerde, Erik; Drabløs, Finn; Hovig, Eivind; Våge, Dag Inge; Willassen, Nils Peder; Petersen, Kjell; Jonassen, Inge. End-to-End Data Management Toolkit for Norwegian Life Scientists. 56th Contact Meeting of the Norwegian Biochemical Society; 2020-01-23 - 2020-01-26 NTNU UiB UiO UiT NMBU Untitled

3.	Brautaset, Trygve; Jonassen, Inge; Bösl, Korbinian; Norunn K, Torheim. På tide å sette av fem prosent av prosjektmidlene til datahåndtering?. Khrono.no 2020 NTNU UiB UiO Untitled

4.	Chen, Yi-Ju; Roumeliotis, Theodoros I.; Chang, Ya-Hsuan; Chen, Ching-Tai; Han, Chia-Li; Lin, Miao-Hsia; Chen, Huei-Wen; Chang, Gee-Chen; Chang, Yih-Leong; Wu, Chen-Tu; Lin, Mong-Wei; Hsieh, Min-Shu; Wang, Yu-Tai; Chen, Yet-Ran; Jonassen, Inge; Zamanzad Ghavidel, Fatemeh; Lin, Ze-Shiang; Lin, Kuen-Tyng; Chen, Ching-Wen; Sheu, Pei-Yuan; Hung, Chen-Ting; Huang, Ke-Chieh; Yang, Hao-Chin; Lin, Pei-Yi; Yen, Ta-Chi; Lin, Yi-Wei; Wang, Jen-Hung; Raghav, Lovely; Lin, Chien-Yu; Chen, Yan-Si; Wu, Pei-Shan; Lai, Chi-Ting; Weng, Shao-Hsing; Su, Kang-Yi; Chang, Wei-Hung; Tsai, Pang-Yan; Robles, Ana I.; Rodriguez, Henry; Hsiao, Yi-Jing; Chang, Wen-Hsin; Sung, Ting-Yi; Chen, Jin-Shing; Yu, Sung-Liang; Choudhary, Jyoti S.; Chen, Hsuan-Yu; Yang, Pan-Chyr; Chen, Yu-Ju. Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression. Cell 2020 ;Volum 182.(1) s. 226-244.e17 UiB Untitled

5.	Eide, Marta; Goksøyr, Anders; Yadetie, Fekadu; Gilabert, Alejandra; Bartosova, Zdenka; Frøysa, Håvard G; Fallahi, Shirin; Zhang, Xiaokang; Blaser, Nello; Jonassen, Inge; Bruheim, Per; Alendal, Guttorm; Brun, Morten; Porte, Cinta; Karlsen, Odd Andre. A multi-omics approach to study Ppar-mediated regulation of lipid metabolism in Atlantic cod (Gadus morhua). 8th Norwegian Environemntal Toxicology Symposium (NETS) 2020; 2020-11-04 - 2020-11-05 UiB NTNU Untitled

6.	Hanna, Eileen Marie; Zhang, Xiaokang; Eide, Marta; Fallahi, Shirin; Furmanek, Tomasz; Yadetie, Fekadu; Zielinski, Daniel Craig; Goksøyr, Anders; Jonassen, Inge. ReCodLiver0.9: Overcoming Challenges in Genome-Scale Metabolic Reconstruction of a Non-model Species. Frontiers in Molecular Biosciences 2020 ;Volum 7. s. - HAVFORSK UiB Untitled

7.	Khan, Essa Ahsan; Zhang, Xiaokang; Hanna, Eileen Marie; Bartosova, Zdenka; Yadetie, Fekadu; Jonassen, Inge; Goksøyr, Anders; Arukwe, Augustine. Quantitative transcriptomics, and lipidomics in evaluating ovarian developmental effects in Atlantic cod (Gadus morhua) caged at a capped marine waste disposal site. Environmental Research 2020 ;Volum 189:109906. s. 1-11 NTNU UiB Untitled

8.	Khan, Essa Ahsan; Zhang, Xiaokang; Hanna, Eileen Marie; Yadetie, Fekadu; Jonassen, Inge; Goksøyr, Anders; Arukwe, Augustine. Application of quantitative transcriptomics in evaluating the ex vivo effects of per- and polyfluoroalkyl substances on Atlantic cod (Gadus morhua) ovarian physiology. Science of the Total Environment 2020 s. 1-11 NTNU UiB Untitled

9.	Lekang, Katrine; Lanzén, Anders; Jonassen, Inge; Thompson, Eric; Troedsson, Christofer. Evaluation of a eukaryote phylogenetic microarray for environmental monitoring of marine sediments. Marine Pollution Bulletin 2020 ;Volum 154:111102.(May) s. 1-9 UiB UiO NORCE Untitled

10.	Romanowska, Julia; Haaland, Øystein Ariansen; Jugessur, Astanand; Gjerdevik, Miriam; Xu, Zongli; Taylor, Jack; Wilcox, Allen J.; Jonassen, Inge; Lie, Rolv T.; Gjessing, Håkon K.. Gene-methylation interactions: Discovering region-wise DNA methylation levels that modify SNP-associated disease risk. Clinical Epigenetics 2020 ;Volum 12. s. - FHI UiB Untitled

11.	Sanchez Nido, Gonzalo; Dick, Fiona; Toker, Lilah; Petersen, Kjell; Alves, Guido Werner; Tysnes, Ole-Bjørn; Jonassen, Inge; Haugarvoll, Kristoffer; Tzoulis, Charalampos. Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition. Acta neuropathologica communications 2020 ;Volum 8. s. 1-14 UiB HAUKELAND SUS UIS Untitled

12.	Stansberg, Christine; Willassen, Nils P; Thomassen, Gard O Sundby; Hovig, Johannes Eivind; Jonassen, Inge. How open databases turn out to be crucial in the fight against Covid-19. NBS-nytt 2020 ;Volum 4. s. 38-43 UiO OUS UiT UiB Untitled

13.	Xue, Yaxin; Jonassen, Inge; Øvreås, Lise; Tas, Neslihan. Metagenome-assembled genome distribution and key functionality highlight importance of aerobic metabolism in Svalbard permafrost. FEMS Microbiology Ecology 2020 ;Volum 96.(5) s. - UiB UNIS Untitled

14.	Xue, Yaxin; Lanzén, Anders; Jonassen, Inge. Reconstructing ribosomal genes from large scale total RNA meta-transcriptomic data. Bioinformatics 2020 ;Volum 36.(11) s. 3365-3371 UiB Untitled

15.	Zhang, Xiaokang; Jonassen, Inge. RASflow: an RNA-Seq analysis workflow with Snakemake. BMC Bioinformatics 2020 ;Volum 21. s. - UiB Untitled