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English
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For å registrere i Cristin må du være vitenskapelig eller administrativt ansatt.
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Etternavn: Snipen Fornavn: Lars-Gustav Alle publ. kanaler
2023
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1. |
Hiseni, Pranvera; Snipen, Lars-Gustav; Wilson, Robert Charles; Furu, Kari; Hegge, Finn Terje; Rudi, Knut. Prediction of high fecal propionate-to-butyrate ratios using 16S rRNA-based detection of bacterial groups with liquid array diagnostics. BioTechniques 2023 ;Volum 74.(1) s. 9-21 HINN NMBU
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2. |
Liland, Kristian Hovde; Tomic, Oliver; Indahl, Ulf Geir; Futsæther, Cecilia Marie; Jiao, Lei; Granmo, Ole-Christoffer; Snipen, Lars-Gustav. Tsetlin Machine in DNA sequence classification. International Symposium on the Tsetlin Machine 2023; 2023-08-29 - 2023-08-30 NMBU UiO NOFIMA UIA
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3. |
Liland, Kristian Hovde; Tomic, Oliver; Indahl, Ulf Geir; Futsæther, Cecilia Marie; Lei, Jiao; Granmo, Ole-Christoffer; Snipen, Lars-Gustav. Tsetlin Machine in DNA sequence classification : Application to prokaryote gene prediction / A match made in silico. I: 2023 International Symposium on the Tsetlin Machine (ISTM). IEEE conference proceedings 2023 ISBN 979-8-3503-4477-6. UIA NMBU
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4. |
Nilsen, Morten; Nygaard, Unni Cecilie; Brodin, Petter; Carlsen, Karin Cecilie Lødrup; Fredheim, Cecilie; Haugen, Guttorm Nils; Hedlin, Gunilla; Jonassen, Christine Genevieve Monceyron; Jonsmoen, Unni Lise Albertsdottir; Lakshmikanth, Tadepally; Nordlund, Björn; Olin, Axel; Rehbinder, Eva Maria; Skjerven, Håvard O.; Snipen, Lars; Staff, Anne Cathrine; Söderhäll, Cilla; Vettukattil, Muhammad Riyas; Rudi, Knut. Gut bacteria at 6 months of age are associated with immune cell status in 1-year-old children. Scandinavian Journal of Immunology 2023 s. - OSTFSYK FHI OUS UiO NMBU
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5. |
Nilsen, Morten; Rehbinder, Eva Maria; Carlsen, Karin Cecilie Lødrup; Haugen, Guttorm Nils; Hedlin, Gunilla; Jonassen, Christine M; Killingstad, Madeleine-Emilie; Nordlund, Bjørn Kristian; Ormaasen, Ida; Skjerven, Håvard Ove; Snipen, Lars-Gustav; Staff, Anne Cathrine; Söderhäll, Cilla; Sørensen, Regina; Vettukattil, Muhammad Riyas; Wilborn, Lene Marie; Rudi, Knut. A Globally Distributed Bacteroides caccae Strain Is the Most Prevalent Mother-Child Shared Bacteroidaceae Strain in a Large Scandinavian Cohort. Applied and Environmental Microbiology 2023 ;Volum 89.(7) s. 1-15 NMBU UiO OUS OSTFSYK
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6. |
Ormaasen, Ida; Rudi, Knut; Diep, Bao Dung; Snipen, Lars-Gustav. Metagenome-mining indicates an association between bacteriocin presence and strain diversity in the infant gut. BMC Genomics 2023 ;Volum 24.(1) s. - NMBU
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2022
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7. |
Hiseni, Pranvera; Snipen, Lars Gustav; Wilson, Robert Charles; Furu, Kari; Rudi, Knut. Questioning the Quality of 16S rRNA Gene Sequences Derived From Human Gut Metagenome-Assembled Genomes. Frontiers in Microbiology 2022 NMBU HINN
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8. |
León, Arturo Vera-Ponce; Hötzinger, Matthias; Mangseth Johnsen, Sander Johan; Agerbo Rasmussen, Jacob; Rudi, Knut; Snipen, Lars-Gustav; Karlsen, Christian René; Limborg, Morten Tønsberg; Bertilsson, Stefan; Sandve, Simen Rød; Pope, Phillip; Leanti La Rosa, Sabina. The Salmon Microbial Genome Atlas enables novel insights into bacteria-host interactions via functional mapping. Norwegian Society for Microbiology (NFM) meeting; 2022-11-09 - 2022-11-09 HINN NMBU
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9. |
Pettersen, Ragnhild; Ormaasen, Ida; Angell, Inga Leena; Keeley, Nigel B.; Lindseth, A.; Snipen, Lars-Gustav; Rudi, Knut. Bimodal distribution of seafloor microbiota diversity and function are associated with marine aquaculture. Marine Genomics 2022 ;Volum 66. s. - AKVAPLAN NMBU HAVFORSK
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2021
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10. |
Hiseni, Pranvera; Rudi, Knut; Wilson, Robert Charles; Hegge, Finn Terje; Snipen, Lars Gustav. HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data. Microbiome 2021 ;Volum 9. s. - NMBU HINN
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11. |
Hiseni, Pranvera; Rudi, Knut; Wilson, Robert Charles; Hegge, Finn Terje; Snipen, Lars-Gustav. HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data. Microbiome 2021 NMBU HINN
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12. |
Lokmic, Asima; Angell, Inga Leena; Carlsen, Karin Cecilie Lødrup; Carlsen, Kai-Håkon; Haugen, Guttorm Nils; Hedlin, Gunilla; Jonassen, Christine Monceyron; Marsland, Benjamin J.; Nordlund, Björn; Rehbinder, Eva Maria; Saunders, Carina Madelen; Skjerven, Håvard Ove; Snipen, Lars-Gustav; Staff, Anne Cathrine; Söderhäll, Cilla; Vettukattil, Muhammad Riyas; Rudi, Knut. Fecal Microbiota Nutrient Utilization Potential Suggests Mucins as Drivers for Initial Gut Colonization of Mother-Child-Shared Bacteria. Applied and Environmental Microbiology 2021 NMBU UiO OUS HINN
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13. |
Nilsen, Morten; Lokmic, Asima; Angell, Inga Leena; Carlsen, Karin C. Lødrup; Carlsen, Kai-Håkon; Haugen, Guttorm; Hedlin, Gunilla; Jonassen, Christine M; Marsland, Benjamin J.; Nordlund, Björn; Rehbinder, Eva Maria; Schinagl, Carina Madelen; Skjerven, Håvard Ove; Snipen, Lars Gustav; Staff, Anne Cathrine; Söderhäll, Cilla; Vettukattil, Muhammad Riyas; Rudi, Knut. Fecal Microbiota Nutrient Utilization Potential Suggests Mucins as Drivers for Initial Gut Colonization of Mother-Child-Shared Bacteria. Applied and Environmental Microbiology 2021 ;Volum 87.(6) s. - NMBU OUS UiO OSTFSYK
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14. |
Nilsen, Morten; Lokmic, Asima; Angell, Inga Leena; Carlsen, Karin Cecilie Lødrup; Carlsen, Kai-Håkon; Haugen, Guttorm Nils; Hedlin, Gunilla; Jonassen, Christine Monceyron; Marsland, Benjamin J.; Nordlund, Björn; Rehbinder, Eva Maria; Saunders, Carina Madelen; Skjerven, Håvard Ove; Snipen, Lars-Gustav; Staff, Anne Cathrine; Söderhäll, Cilla; Vettukattil, Muhammad Riyas; Rudi, Knut. Fecal Microbiota Nutrient Utilization Potential Suggests Mucins as Drivers for Initial Gut Colonization of Mother-Child-Shared Bacteria. Applied and Environmental Microbiology 2021 OUS NMBU UiO HINN
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15. |
Salzmann, Andrea Patrizia; Arora, Natasha; Russo, Giancarlo; Kreutzer, Susanne; Snipen, Lars Gustav; Haas, Cordula. Assessing time dependent changes in microbial composition of biological crime scene traces using microbial RNA markers. Forensic Science International: Genetics 2021 ;Volum 53. s. - NMBU
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16. |
Snipen, Lars; Angell, Inga-Leena; Rognes, Torbjørn; Rudi, Knut. Reduced metagenome sequencing for strain-resolution taxonomic profiles. Microbiome 2021 ;Volum 9.(1) s. - NMBU UiO
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2020
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17. |
Nilsen, Morten; Schinagl, Carina Madelen; Angell, Inga Leena; Arntzen, Magnus Øverlie; Carlsen, Karin C. Lødrup; Carlsen, Kai-Håkon; Haugen, Guttorm; Hagen, Live Heldal; Carlsen, Monica Hauger; Hedlin, Gunilla; Jonassen, Christine M; Nordlund, Bjørn; Rehbinder, Eva Maria; Skjerven, Håvard Ove; Snipen, Lars Gustav; Staff, Anne Cathrine; Vettukattil, Muhammad Riyas; Rudi, Knut. Butyrate Levels in the Transition from an Infant-to an Adult-Like Gut Microbiota Correlate with Bacterial Networks Associated with Eubacterium Rectale and Ruminococcus Gnavus. Genes 2020 ;Volum 11.(11) s. - OSTFSYK OUS UiO NMBU
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2019
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18. |
Dørum, Guro; Ingold, Sabrina; Hanson, Erin; Ballantyne, Jack; Russo, Giancarlo; Aluri, Sirisha; Snipen, Lars-Gustav; Haas, Cordula. Predicting the origin of stains from whole miRNome massively parallel sequencing data. Forensic Science International: Genetics 2019 ;Volum 40. s. 131-139 NMBU
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19. |
Jin, Yang; Angell, Inga Leena; Sandve, Simen Rød; Snipen, Lars-Gustav; Olsen, Yngvar; Rudi, Knut. Atlantic salmon raised with diets low in long-chain polyunsaturated n-3 fatty acids in freshwater have a Mycoplasma-dominated gut microbiota at sea. Aquaculture Environment Interactions 2019 ;Volum 11. s. 31-39 NMBU NTNU
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20. |
Liu, Binbin; Zhang, Xiaojun; Bakken, Lars; Snipen, Lars-Gustav; Frostegård, Åsa. Rapid succession of actively transcribing denitrifier populations in agricultural soil during an anoxic spell. Frontiers in Microbiology 2019 ;Volum 9. NMBU
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2018
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21. |
Dørum, Guro; Ingold, Sabrina; Hanson, Erin; Ballantyne, Jack; Snipen, Lars-Gustav; Haas, Cordula. Predicting the origin of stains from next generation sequencing mRNA data. Forensic Science International: Genetics 2018 ;Volum 34. s. 37-48 NMBU
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22. |
Hanssen, Eirik Natås; Liland, Kristian Hovde; Gill, Peter; Snipen, Lars-Gustav. Optimizing body fluid recognition from microbial taxonomic profiles. Forensic Science International: Genetics 2018 ;Volum 37. s. 13-20 NMBU UiO OUS
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23. |
Ravi, Anuradha; Avershina, Ekaterina; Angell, Inga Leena; Ludvigsen, Jane; Manohar, Prasanth; Padmanaban, Sumathi; Nachimuthu, Ramesh; Snipen, Lars-Gustav; Rudi, Knut. Comparison of reduced metagenome and 16S rRNA gene sequencing for determination of genetic diversity and mother-child overlap of the gut associated microbiota. Journal of Microbiological Methods 2018 ;Volum 149. s. 44-52 NMBU
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24. |
Rudi, Knut; Angell, Inga Leena; Pope, Phillip; Vik, Jon Olav; Sandve, Simen Rød; Snipen, Lars-Gustav. A stable core gut microbiota across fresh- to saltwater transition for farmed Atlantic salmon. Applied and Environmental Microbiology 2018 ;Volum 84.(2) NMBU
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2017
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25. |
Bohlin, Jon; Eldholm, Vegard; Pettersson, John; Brynildsrud, Ola Brønstad; Snipen, Lars-Gustav. The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes. BMC Genomics 2017 ;Volum 18. s. - FHI NMBU
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26. |
Bråten, Line Skute; Sødring, Marianne Sundt; Paulsen, Jan Erik; Snipen, Lars-Gustav; Rudi, Knut. Cecal microbiota association with tumor load in a colorectal cancer mouse model. Microbial Ecology in Health and Disease 2017 ;Volum 28.(1) NMBU
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27. |
Hanssen, Eirik Natås; Avershina, Ekaterina; Rudi, Knut; Gill, Peter; Snipen, Lars-Gustav. Body Fluid Prediction from Microbial Patterns for Forensic Application. Forensic Science International: Genetics 2017 ;Volum 30. s. 10-17 UiO NMBU OUS
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28. |
Liland, Kristian Hovde; Vinje, Hilde; Snipen, Lars-Gustav. microclass: An R-package for 16S taxonomy classification. BMC Bioinformatics 2017 ;Volum 18.(172) s. - NMBU NOFIMA
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29. |
McLeod, Anette; Mosleth, Ellen Færgestad; Rud, Ida; Branco dos Santos, Filipe; Snipen, Lars-Gustav; Liland, Kristian Hovde; Axelsson, Lars. Effects of glucose availability in Lactobacillus sakei; metabolic change and regulation of the proteome and transcriptome. PLOS ONE 2017 ;Volum 12:e0187542.(11) s. 1-20 NOFIMA NMBU
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2016
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30. |
Liland, Kristian Hovde; Snipen, Lars-Gustav. fixedTimeEvents: An R package for the distribution of distances between discrete events in fixed time. SoftwareX 2016 ;Volum 5. s. 227-233 NOFIMA NMBU
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31. |
Malmstrøm, Martin; Matschiner, Michael; Tørresen, Ole Kristian; Star, Bastiaan; Snipen, Lars-Gustav; Hansen, Thomas F; Baalsrud, Helle Tessand; Nederbragt, Alexander Johan; Hanel, Reinhold; Salzburger, Walter; Stenseth, Nils Christian; Jakobsen, Kjetill Sigurd; Jentoft, Sissel. Evolution of the immune system influences speciation rates in teleost fishes. Nature Genetics 2016 ;Volum 48.(10) s. 1204-1210 UiO NMBU UIA HAVFORSK
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2015
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32. |
Brynildsrud, Ola Brønstad; Snipen, Lars-Gustav; Bohlin, Jon. CNOGpro: detection and quantification of CNVs in prokaryotic whole-genome sequencing data. Bioinformatics 2015 ;Volum 31.(11) s. 1708-1715 NMBU FHI
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33. |
Leanti La Rosa, Sabina; Snipen, Lars-Gustav; Murray, Barbara E.; Willems, Rob J.L.; Gilmore, Michael S.; Diep, Dzung Bao; Nes, Ingolf; Brede, Dag Anders. A genomic virulence reference map of Enterococcus faecalis reveals an important contribution of phage03-like elements in nosocomial genetic lineages to pathogenicity in a Caenorhabditis elegans infection model. Infection and Immunity 2015 ;Volum 83.(5) s. 2156-2167 NMBU
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34. |
Mehmood, Tahir; Bohlin, Jon; Snipen, Lars. A partial least squares based procedure for upstream sequence classification in prokaryotes. IEEE/ACM Transactions on Computational Biology & Bioinformatics 2015 ;Volum 12.(3) s. 560-567 NMBU
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35. |
Snipen, Lars-Gustav; Liland, Kristian Hovde. micropan: An R-package for microbial pan-genomics. BMC Bioinformatics 2015 ;Volum 16.(1) s. 1-8 NOFIMA NMBU
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36. |
Vinje, Hilde; Liland, Kristian Hovde; Almøy, Trygve; Snipen, Lars-Gustav. Comparing K-mer based methods for improved classification of 16S sequences. BMC Bioinformatics 2015 ;Volum 16:205. NOFIMA NMBU
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2014
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37. |
Askarian, Fatemeh; Sangvik, Maria; Hanssen, Anne-Merethe; Snipen, Lars; Sollid, Johanna U. Ericson; Johannessen, Mona. Staphylococcus aureus nasal isolates from healthy individuals cause highly variable host cell responses in vitro: The Tromsø Staph and Skin Study. Pathogens and Disease 2014 ;Volum 70.(2) s. 158-166 NMBU UiT
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38. |
Bohlin, Jon; Brynildsrud, Ola Brønstad; Sekse, Camilla; Snipen, Lars. An evolutionary analysis of genome expansion and pathogenicity in Escherichia coli. BMC Genomics 2014 ;Volum 15. s. - FHI NMBU VETINST
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39. |
Dørum, Guro; Bleka, Øyvind; Gill, Peter; Haned, Hinda; Snipen, Lars; Sæbø, Solve; Egeland, Thore. Exact computation of the distribution of likelihood ratios with forensic applications. Forensic Science International: Genetics 2014 ;Volum 9.(1) s. 93-101 UiO NMBU FHI
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40. |
Dørum, Guro; Snipen, Lars; Solheim, Margrete; Sæbø, Solve. Rotation gene set testing for longitudinal expression data. Biometrical Journal 2014 ;Volum 56.(6) s. 1055-1075 NMBU
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41. |
McLeod, Anette; Mosleth, Ellen Færgestad; Snipen, Lars; dos Santos, Filipe Braco; Lysenko, Artem; Rud, Ida; Axelsson, Lars. The effect of growth rate in Lactobacillus sakei; analysis of experimental data in light of external information. 11th International Symposium on Lactic Acid Bacteria; 2014-08-31 - 2014-09-04 NOFIMA NMBU
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42. |
Solheim, Margrete; Leanti La Rosa, Sabina; Mathiesen, Thomas; Snipen, Lars; Nes, Ingolf; Brede, Dag Anders. Functional Analysis of NaCl-Induced Stress in Enterococcus faecalis. PLOS ONE 2014 ;Volum 9.(4) NMBU
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43. |
Vinje, Hilde; Almøy, Trygve; Liland, Kristian Hovde; Snipen, Lars. A systematic search for discriminating sites in the 16S ribosomal RNA gene. Microbial Informatics and Experimentation 2014 ;Volum 4.(2) s. - NMBU NOFIMA
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2013
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44. |
Mehmood, Tahir; Snipen, Lars. Clustered Variable Selection by Regularized Elimination in PLS. I: New Perspectives in Partial Least Squares and Related Methods. Springer 2013 ISBN 978-1-4614-8283-3. s. 95-105 NMBU
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2012
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45. |
Mehmood, Tahir; Snipen, Lars. Clustered variable selection by regularized elimination in PLS. PLS2012 Conference proceeding, Houston, Texas, USA; 2012-05-19 - 2012-05-22 NMBU
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46. |
Bohlin, Jon; van Passel, Mark W.J.; Snipen, Lars; Kristoffersen, Anja Bråthen; Ussery, David W.; Hardy, Simon P.. Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands. BMC Genomics 2012 ;Volum 13. NMBU VETINST
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47. |
Mehmeti, Ibrahim; Færgestad, Ellen Mosleth; Bekker, Martijn; Snipen, Lars; Nes, Ingolf; Holo, Helge. Growth Rate-Dependent Control in Enterococcus faecalis: Effects on the Transcriptome and Proteome, and Strong Regulation of Lactate Dehydrogenase. Applied and Environmental Microbiology 2012 ;Volum 78.(1) s. 170-176 NOFIMA NMBU
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48. |
Mehmood, Tahir; Bohlin, Jon; Kristoffersen, Anja Bråthen; Sæbø, Solve; Warringer, Jonas; Snipen, Lars. Exploration of multivariate analysis in microbial coding sequence modeling. BMC Bioinformatics 2012 ;Volum 13. UiO NMBU VETINST
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49. |
Mehmood, Tahir; Liland, Kristian Hovde; Snipen, Lars; Sæbø, Solve. A review of variable selction methods in Partial Least Squares Regression. Chemometrics and Intelligent Laboratory Systems 2012 ;Volum 118. s. 62-69 NMBU
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50. |
Mehmood, Tahir; Snipen, Lars. Variable selection in PLS in presence of correlated variables. ims-APRM, 2012; 2012-07-02 - 2012-07-04 UiO NMBU
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